TCONS_00050981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050981
Unique NameTCONS_00050981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050981 ID=TCONS_00050981|Name=TCONS_00050981|organism=Clytia hemisphaerica|type=transcript|length=574bp
ATTCTTTGTGAATTTCATCAAAACATAACCAATAACTTGAGTTATTAAAC
CAGCTTCTCCAAAAGTGAAACTGTTTGGCGAATGTCTCACAATGGTgaaa
aataaggcaaaatagactGCAATCGTTGCTAAACTGACAATGAACCATCC
AGTTGTTATTGTTGGGGATATAATAATGAACACAGTAGCAAATAATAATA
TAGTCATCAAAGGTCCAAAGCAAACAAAAAAACCAAATACTGCAAATAAT
GTTGATGTCATGACAGCGTAAAAGTAACCATTGGAGTCTCCTTGCAGATT
TTGCAAAGAATCTTTGATGCAGAAAAATGTTGGGAAGACAACAATAGGGT
AGACAAAACCATCATCGCTGAAACAACGAAACAATAATTCCATCTTCGAT
TGGTAGTTCCATCTTAAGTTTGATTGACTTCGTCCAAATAGTGTTAAAAT
AAAAGAGGTTGTGAGTAAGGTAAGATGATGAAGGGTGAAAGAATGAAATG
CCAGCGGTAAACAGATTAGCAACCATTCAATAAAGCCAAGCATAATCCCT
AATTTTACTTTAACTAGCTAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00050981-protein

>TCONS_00050981-protein ID=TCONS_00050981-protein|Name=TCONS_00050981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MLGFIEWLLICLPLAFHSFTLHHLTLLTTSFILTLFGRSQSNLRWNYQSK
MELLFRCFSDDGFVYPIVVFPTFFCIKDSLQNLQGDSNGYFYAVMTSTLF
AVFGFFVCFGPLMTILLFATVFIIISPTITTGWFIVSLATIAVYFALFFT
IVRHSPNSFTFGEAGLITQVIGYVLMKFTKN
Run BLAST on NCBI

transcript from alignment at scaffold_19:797179..797752

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050981 ID=TCONS_00050981|Name=TCONS_00050981|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at scaffold_19:797179..797752 (Clytia hemisphaerica)
CTTTTAGCTAGTTAAAGTAAAATTAGGGATTATGCTTGGCTTTATTGAAT
GGTTGCTAATCTGTTTACCGCTGGCATTTCATTCTTTCACCCTTCATCAT
CTTACCTTACTCACAACCTCTTTTATTTTAACACTATTTGGACGAAGTCA
ATCAAACTTAAGATGGAACTACCAATCGAAGATGGAATTATTGTTTCGTT
GTTTCAGCGATGATGGTTTTGTCTACCCTATTGTTGTCTTCCCAACATTT
TTCTGCATCAAAGATTCTTTGCAAAATCTGCAAGGAGACTCCAATGGTTA
CTTTTACGCTGTCATGACATCAACATTATTTGCAGTATTTGGTTTTTTTG
TTTGCTTTGGACCTTTGATGACTATATTATTATTTGCTACTGTGTTCATT
ATTATATCCCCAACAATAACAACTGGATGGTTCATTGTCAGTTTAGCAAC
GATTGCagtctattttgccttatttttcACCATTGTGAGACATTCGCCAA
ACAGTTTCACTTTTGGAGAAGCTGGTTTAATAACTCAAGTTATTGGTTAT
GTTTTGATGAAATTCACAAAGAAT

Coding sequence (CDS) from alignment at scaffold_19:797179..797752

>TCONS_00050981 ID=TCONS_00050981|Name=TCONS_00050981|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_19:797179..797752 (Clytia hemisphaerica)
ATGCTTGGCTTTATTGAATGGTTGCTAATCTGTTTACCGCTGGCATTTCA
TTCTTTCACCCTTCATCATCTTACCTTACTCACAACCTCTTTTATTTTAA
CACTATTTGGACGAAGTCAATCAAACTTAAGATGGAACTACCAATCGAAG
ATGGAATTATTGTTTCGTTGTTTCAGCGATGATGGTTTTGTCTACCCTAT
TGTTGTCTTCCCAACATTTTTCTGCATCAAAGATTCTTTGCAAAATCTGC
AAGGAGACTCCAATGGTTACTTTTACGCTGTCATGACATCAACATTATTT
GCAGTATTTGGTTTTTTTGTTTGCTTTGGACCTTTGATGACTATATTATT
ATTTGCTACTGTGTTCATTATTATATCCCCAACAATAACAACTGGATGGT
TCATTGTCAGTTTAGCAACGATTGCagtctattttgccttatttttcACC
ATTGTGAGACATTCGCCAAACAGTTTCACTTTTGGAGAAGCTGGTTTAAT
AACTCAAGTTATTGGTTATGTTTTGATGAAATTCACAAAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032322XLOC_032322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050981-exon-scaffold_19-1491911889:797179..797752TCONS_00050981-exon-scaffold_19-1491911889:797179..797752Clytia hemisphaericaexon
TCONS_00050981-exon-scaffold_19-1510915933:797179..797752TCONS_00050981-exon-scaffold_19-1510915933:797179..797752Clytia hemisphaericaexon
TCONS_00050981-exon-scaffold_19-1575043694:797179..797752TCONS_00050981-exon-scaffold_19-1575043694:797179..797752Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050981-proteinTCONS_00050981-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:797179..797752 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.21473	9.46233	2.97043	1.71872	4.47778	1.26976	1.98502	0.749602	1.15838	0.353586	2.33053	1.175	0.71926	1.57799	0.898621	2.59361	1.45792	1.59017	1.44221	0.068225	1.09558	1.36044	6.19869	5.54639	1.35367	0.629928	2.17343	0	5.64384	6.00788
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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