TCONS_00050971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050971
Unique NameTCONS_00050971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050971 ID=TCONS_00050971|Name=TCONS_00050971|organism=Clytia hemisphaerica|type=transcript|length=650bp
ccaaaatctTCGGTTGTAAAcatattttacttttaatagGGGACGCAAAA
ATCCCAGGCTTCAAAAATTGCCTCTCCTGTTTATCCAGTTTGACTTCAAT
GAAAGGGGTGTGAAATTTACCTCAAATGCTCCACCTCGGTAAATTTACTC
AGTAAAAAAAATCTACCACGGTGAAATCCTGTCATTTTCTTAGCCACCCC
GGTGAGGCTTCAAATTCAACcgggttactgagacaggggtgtatagatCT
TCGAAAGAGctttctttttaacataaaCATGACCTTTTTGGTTTTAGCCA
AAGCCGAGAAAATTGTATTTGAAGTTAACACACTGTGGCTTTGAGAAATC
CTAAAATTTCAGTTTCCCataacatccccttctcacagacatgGTAGGTT
TTTCAGCCAGAGGGGAATGGAactaacggactgaaactcgatgaagattg
atattcccatattttttatggctgggattggaaatccattgttttcaagg
CAGGAAATTCAATGGGAGAAAACTTAgataatattttgcaatgaggattg
gtttatatgattattttcagttgggACAATTATTGGATCATAATTTACAA
CTGGGGCGatattttaaccaatttttcTCTGGGAAAAGagtggatctgtg
Run BLAST on NCBI

transcript from alignment at scaffold_19:669974..670623

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050971 ID=TCONS_00050971|Name=TCONS_00050971|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at scaffold_19:669974..670623 (Clytia hemisphaerica)
cacagatccactCTTTTCCCAGAgaaaaattggttaaaatatCGCCCCAG
TTGTAAATTATGATCCAATAATTGTcccaactgaaaataatcatataaac
caatcctcattgcaaaatattatcTAAGTTTTCTCCCATTGAATTTCCTG
ccttgaaaacaatggatttccaatcccagccataaaaaatatgggaatat
caatcttcatcgagtttcagtccgttagtTCCATTCCCCTCTGGCTGAAA
AACCTACcatgtctgtgagaaggggatgttatGGGAAACTGAAATTTTAG
GATTTCTCAAAGCCACAGTGTGTTAACTTCAAATACAATTTTCTCGGCTT
TGGCTAAAACCAAAAAGGTCATGtttatgttaaaaagaaagCTCTTTCGA
AGatctatacacccctgtctcagtaacccgGTTGAATTTGAAGCCTCACC
GGGGTGGCTAAGAAAATGACAGGATTTCACCGTGGTAGATTTTTTTTACT
GAGTAAATTTACCGAGGTGGAGCATTTGAGGTAAATTTCACACCCCTTTC
ATTGAAGTCAAACTGGATAAACAGGAGAGGCAATTTTTGAAGCCTGGGAT
TTTTGCGTCCCctattaaaagtaaaatatgTTTACAACCGAagattttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032312XLOC_032312Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050971-exon-scaffold_19-1491911889:669974..670623TCONS_00050971-exon-scaffold_19-1491911889:669974..670623Clytia hemisphaericaexon
TCONS_00050971-exon-scaffold_19-1510915933:669974..670623TCONS_00050971-exon-scaffold_19-1510915933:669974..670623Clytia hemisphaericaexon
TCONS_00050971-exon-scaffold_19-1575043694:669974..670623TCONS_00050971-exon-scaffold_19-1575043694:669974..670623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:669974..670623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0784499	0	0	1.41036	1.02876	2.68916	3.29219	1.96598	2.85504	1.87462	0.857251	0.588541	1.27797	0.411131	0.098046	0	0.371401	0.598629	0.8054	0.311128	0.113818	0.553443	0.08386	0.950113	1.07921	0.661864	0.588633	0.0892914	0.0909739
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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