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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050964 ID=TCONS_00050964|Name=TCONS_00050964|organism=Clytia hemisphaerica|type=transcript|length=1639bp
CGAGACGAACATATTTCAACTTATTTGAAACAACACAGAGCTTCAAACTG
ACAAACCACAAATCAACGAAAGGGAAGAACACGAAGACAAACTTAACGAT
CTTTAACTTTAAACAGTTGTTAAAAATTGTTCACTCGTCATCATCACTAT
CACTCTCTATTACAAGTCGTCTTCTCTTTGCTGCTTTTCCAGAGTTTACA
TTAAAATTGAATGtgcaatttgaaattttggcacCCTGGAACATGTTTTC
GAATTGCTGATGTTTTGAATCAACGCGAACTGATGATGATTGAAGAGAAG
ATGCATTTGCTGAAACAACTGTACTTGAACTTGTACATGCACGATTGATG
TTATTCATTGGTCGTTTTCCACCACCACTTAAAATGTTAGACATTGTTTG
CTGCTGAGCCTTTGAGGCACTGTGATAGGACTTTAACGACTCAATATTTT
TATGTCCACTGAGTTGTGCCACATGTATTGGGTGAACATTTTCATCAAGA
AGTGTAGTAATCGATGTTTTTCTGGCGGAGTGGTTTGAAATCTTTGATCG
ACTTGTTGTTGAATCTTGACCAAGAATGTCCTTTGCATTAGACATGAAGT
TCCCTAATGAGTTCTTTCCCAATGTAGCTCAAaggttgattttgaaaaca
gtTGGGAATGTTGATACCGCATCGTCAGCTGCTGACTTCATAAATGTTAA
AGGTAAATTATATAGTTGTAGTCGGAGATTTAAGAGAATTGGACTGAGTG
GATTTAGACTATTTGAACCAAACAAAGGCCAAAAATGGTGAGGTCACTAA
ACAAAACACCTTAGACAAATTTCTTAGTGATACCAGAAGAGAACAAAATC
CTAACATTAGTTTGTTTGACTGGGCAAAAAAGTGTTATTGTCCCAAAAGA
ACATCTTGTGGAAAAGACCATGTTCCTGTGTTTACAGGCTGTCAACGCTT
TTGGATTTGGCCAACAGGTGAAGACTTTTCAAGAGAGCTTTTGATGAGAT
TTCATCCTGGTACTTGGAGAAATGTTGAAGATCTGAAAAATGGCTTTGAA
ACATACACCGAATCCTTTGATAATTTCTTAGATACAGATTATTGTCCAGA
GTCTGTCAGAATGATGTTGCAGTTTGCTAAAATTGCATATGATAAAAAAT
TGgatagaaaaaaaagattacatcaGCAGTGCGTAGTACCACAAGAAATT
GATATTTCTCACTCAACAGTTTGTAGCCAAGACAGTCAGGATAGTCAAGC
TTCTCAAGAGTCTGTTATTGACACTATGGGAAATCGCCTCCTAAGAGATT
TTGCAAGAGAGAACAGAGCATCTATTGAAGAGGCCCCAGTAGATGAAGAA
GTACTCTACAGTGGTGGAGATGATTTTGACTGGCATCAAAATGGTTTGAG
ATGGTTAGGTGTTCAGTCGTTTTCAGAAGAACAGATGAATGATACAAAAA
AACTGGCTGTCAGATGTATCTAAACAAGCAACTGAAGCATATGAGAGAGA
ACGAAGGCTTTGTAATTTACCAGAAGTAGACCCAAAATTGGTGAATCACA
TTCAAATGTTAATAGTATACTACAACATCAAAACTTTATTGGAATATGTC
AGAGGGAATTTTAATGTAGGATATGATAATTGTAAAAGA Run BLAST on NCBI protein sequence of TCONS_00050964-protein >TCONS_00050964-protein ID=TCONS_00050964-protein|Name=TCONS_00050964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MRFHPGTWRNVEDLKNGFETYTESFDNFLDTDYCPESVRMMLQFAKIAYD
KKLDRKKRLHQQCVVPQEIDISHSTVCSQDSQDSQASQESVIDTMGNRLL
RDFARENRASIEEAPVDEEVLYSGGDDFDWHQNGLRWLGVQSFSEEQMND
TKKLAVRCI Run BLAST on NCBI transcript from alignment at scaffold_19:483084..484722 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050964 ID=TCONS_00050964|Name=TCONS_00050964|organism=Clytia hemisphaerica|type=transcript|length=1639bp|location=Sequence derived from alignment at scaffold_19:483084..484722 (Clytia hemisphaerica)
TCTTTTACAATTATCATATCCTACATTAAAATTCCCTCTGACATATTCCA
ATAAAGTTTTGATGTTGTAGTATACTATTAACATTTGAATGTGATTCACC
AATTTTGGGTCTACTTCTGGTAAATTACAAAGCCTTCGTTCTCTCTCATA
TGCTTCAGTTGCTTGTTTAGATACATCTGACAGCCAGTTTTTTTGTATCA
TTCATCTGTTCTTCTGAAAACGACTGAACACCTAACCATCTCAAACCATT
TTGATGCCAGTCAAAATCATCTCCACCACTGTAGAGTACTTCTTCATCTA
CTGGGGCCTCTTCAATAGATGCTCTGTTCTCTCTTGCAAAATCTCTTAGG
AGGCGATTTCCCATAGTGTCAATAACAGACTCTTGAGAAGCTTGACTATC
CTGACTGTCTTGGCTACAAACTGTTGAGTGAGAAATATCAATTTCTTGTG
GTACTACGCACTGCtgatgtaatcttttttttctatcCAATTTTTTATCA
TATGCAATTTTAGCAAACTGCAACATCATTCTGACAGACTCTGGACAATA
ATCTGTATCTAAGAAATTATCAAAGGATTCGGTGTATGTTTCAAAGCCAT
TTTTCAGATCTTCAACATTTCTCCAAGTACCAGGATGAAATCTCATCAAA
AGCTCTCTTGAAAAGTCTTCACCTGTTGGCCAAATCCAAAAGCGTTGACA
GCCTGTAAACACAGGAACATGGTCTTTTCCACAAGATGTTCTTTTGGGAC
AATAACACTTTTTTGCCCAGTCAAACAAACTAATGTTAGGATTTTGTTCT
CTTCTGGTATCACTAAGAAATTTGTCTAAGGTGTTTTGTTTAGTGACCTC
ACCATTTTTGGCCTTTGTTTGGTTCAAATAGTCTAAATCCACTCAGTCCA
ATTCTCTTAAATCTCCGACTACAACTATATAATTTACCTTTAACATTTAT
GAAGTCAGCAGCTGACGATGCGGTATCAACATTCCCAactgttttcaaaa
tcaacctTTGAGCTACATTGGGAAAGAACTCATTAGGGAACTTCATGTCT
AATGCAAAGGACATTCTTGGTCAAGATTCAACAACAAGTCGATCAAAGAT
TTCAAACCACTCCGCCAGAAAAACATCGATTACTACACTTCTTGATGAAA
ATGTTCACCCAATACATGTGGCACAACTCAGTGGACATAAAAATATTGAG
TCGTTAAAGTCCTATCACAGTGCCTCAAAGGCTCAGCAGCAAACAATGTC
TAACATTTTAAGTGGTGGTGGAAAACGACCAATGAATAACATCAATCGTG
CATGTACAAGTTCAAGTACAGTTGTTTCAGCAAATGCATCTTCTCTTCAA
TCATCATCAGTTCGCGTTGATTCAAAACATCAGCAATTCGAAAACATGTT
CCAGGgtgccaaaatttcaaattgcaCATTCAATTTTAATGTAAACTCTG
GAAAAGCAGCAAAGAGAAGACGACTTGTAATAGAGAGTGATAGTGATGAT
GACGAGTGAACAATTTTTAACAACTGTTTAAAGTTAAAGATCGTTAAGTT
TGTCTTCGTGTTCTTCCCTTTCGTTGATTTGTGGTTTGTCAGTTTGAAGC
TCTGTGTTGTTTCAAATAAGTTGAAATATGTTCGTCTCG Coding sequence (CDS) from alignment at scaffold_19:483084..484722 >TCONS_00050964 ID=TCONS_00050964|Name=TCONS_00050964|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_19:483084..484722 (Clytia hemisphaerica)
TTAGATACATCTGACAGCCAGTTTTTTTGTATCATTCATCTGTTCTTCTG
AAAACGACTGAACACCTAACCATCTCAAACCATTTTGATGCCAGTCAAAA
TCATCTCCACCACTGTAGAGTACTTCTTCATCTACTGGGGCCTCTTCAAT
AGATGCTCTGTTCTCTCTTGCAAAATCTCTTAGGAGGCGATTTCCCATAG
TGTCAATAACAGACTCTTGAGAAGCTTGACTATCCTGACTGTCTTGGCTA
CAAACTGTTGAGTGAGAAATATCAATTTCTTGTGGTACTACGCACTGCtg
atgtaatcttttttttctatcCAATTTTTTATCATATGCAATTTTAGCAA
ACTGCAACATCATTCTGACAGACTCTGGACAATAATCTGTATCTAAGAAA
TTATCAAAGGATTCGGTGTATGTTTCAAAGCCATTTTTCAGATCTTCAAC
ATTTCTCCAAGTACCAGGATGAAATCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050964-exon-scaffold_19-1491911889:483084..484722 | TCONS_00050964-exon-scaffold_19-1491911889:483084..484722 | Clytia hemisphaerica | exon |
| TCONS_00050964-exon-scaffold_19-1510915933:483084..484722 | TCONS_00050964-exon-scaffold_19-1510915933:483084..484722 | Clytia hemisphaerica | exon |
| TCONS_00050964-exon-scaffold_19-1575043694:483084..484722 | TCONS_00050964-exon-scaffold_19-1575043694:483084..484722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:483084..484722 . |
Blast
The following BLAST results are available for this feature:
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