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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050963 ID=TCONS_00050963|Name=TCONS_00050963|organism=Clytia hemisphaerica|type=transcript|length=1417bp
GTCAACAGTTTGTAGCCAAGACAGTCAGGATAGTCAAGCCTCTCAAGAGT
CTGTTATTGACACTATGGGAAATCGCCTCCTAAGAGATTTTGCAAGAGAG
AACAGAGCATCTATTGAAGAGGCCCCAGTAGATGAAGAAGTACTCTACAG
TGGTGGAGATGATTTTGACTGGCATCAAAATGGTTTGAGATGGTTAGGTG
TTCAGTCGTTTTCAGAAGAACAGATGAATGATACAAAAAACTGGCTGTCA
GATGTATCTAAACAAGCAACTGAAGCATATGAGAGAGAAGGAAGGCTTTG
TAATTTACCAGAAGTAGACCCAAAATTGGTGAATCACATTCAAATGTTAA
TAGTATACTACAACATCAAAACTTTATTGGAATATGCCAGAGGGAATTTT
AATGTAGGATATGACAATTGTAAAAGACTCATCATACAGGGTTGTGCTGG
TACAGGTAAGTCTCAGGTTGTAAAAATTATTACACGTCTTGTTCGTCGAA
TTTTTCAATGTAATCGTGCTGTATTGAATGTTGCTCCCACTAGTGCAGCC
GGTCTGTTATTACCTGGAGGAGGTACTATACATTCATGTGTCAACATTCC
ACGGAAGACTAAAGAAAAATTTACTCTAGCAGATCGCCCAATGTCAGCAG
AACAAAGTGGCCTTTTGAAGAAATTGACCCTTGATAACGATAATAGCAAA
CTATCCCTCATGTGCCTAAATGCAGATGAAAGAGGAATGGTTGGTCAATA
TGTCTTAGCATGGTTCCATCACCGGTTTTCTGAAATGTCATCGAATCTTT
TAAATACAGAGAGTGATGTCCCTTTTGGTTGtataccaacattcaatttt
ttggTGATATATTTCAATTGAGAGACATTGGAGAGCGCAATCTGTATGAT
ATAGTGCTTGAATCAACAGATCCAATTGATATAGCAGGTGGACTTTTATA
CAAGAATTTTGTTGATGTATTTATATTAGAAGAAATTATGCGACAACAGT
CTGGTCAAGCAGCTTTGCTGAGACGCTTGGATAATCTGCGAACTGGTAAT
GTTACTAAAAAGGATTGGGAGGAAATTAATAATCGTTGTTATGCTAATCT
ACCAGCTGAAGATAAAATTCAATTTGATAATGAAACTTCGGATGTTATTT
GCTTGACAGAGACATGGAAAGAAGCCAAAAAGTATAACCGTTCNTCGTTG
TTATGCTAATTTACCAGCTgaatataaaattaaatttgataatGAAACTT
CGGATGTTATTTGCTTGACAGAGACATGGAAAGAAGCCAAAAAGTATAAC
CGTTCTGTTTTAAATACGAAAATTTACAATAGTGAAAAAGTGGTATGCGC
CGAGTTTAAAAGTATTGGCCATGGGGCACATCATAATACTGCAAAAGAGT
CCTTGTCACAAATACCG Run BLAST on NCBI protein sequence of TCONS_00050963-protein >TCONS_00050963-protein ID=TCONS_00050963-protein|Name=TCONS_00050963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
STVCSQDSQDSQASQESVIDTMGNRLLRDFARENRASIEEAPVDEEVLYS
GGDDFDWHQNGLRWLGVQSFSEEQMNDTKNWLSDVSKQATEAYEREGRLC
NLPEVDPKLVNHIQMLIVYYNIKTLLEYARGNFNVGYDNCKRLIIQGCAG
TGKSQVVKIITRLVRRIFQCNRAVLNVAPTSAAGLLLPGGGTIHSCVNIP
RKTKEKFTLADRPMSAEQSGLLKKLTLDNDNSKLSLMCLNADERGMVGQY
VLAWFHHRFSEMSSNLLNTESDVPFGCIPTFNFLVIYFN Run BLAST on NCBI transcript from alignment at scaffold_19:481249..482665 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050963 ID=TCONS_00050963|Name=TCONS_00050963|organism=Clytia hemisphaerica|type=transcript|length=1417bp|location=Sequence derived from alignment at scaffold_19:481249..482665 (Clytia hemisphaerica)
CGGTATTTGTGACAAGGACTCTTTTGCAGTATTATGATGTGCCCCATGGC
CAATACTTTTAAACTCGGCGCATACCACTTTTTCACTATTGTAAATTTTC
GTATTTAAAACAGAACGGTTATACTTTTTGGCTTCTTTCCATGTCTCTGT
CAAGCAAATAACATCCGAAGTTTCattatcaaatttaattttatattcAG
CTGGTAAATTAGCATAACAACGANGAACGGTTATACTTTTTGGCTTCTTT
CCATGTCTCTGTCAAGCAAATAACATCCGAAGTTTCATTATCAAATTGAA
TTTTATCTTCAGCTGGTAGATTAGCATAACAACGATTATTAATTTCCTCC
CAATCCTTTTTAGTAACATTACCAGTTCGCAGATTATCCAAGCGTCTCAG
CAAAGCTGCTTGACCAGACTGTTGTCGCATAATTTCTTCTAATATAAATA
CATCAACAAAATTCTTGTATAAAAGTCCACCTGCTATATCAATTGGATCT
GTTGATTCAAGCACTATATCATACAGATTGCGCTCTCCAATGTCTCTCAA
TTGAAATATATCAccaaaaaattgaatgttggtataCAACCAAAAGGGAC
ATCACTCTCTGTATTTAAAAGATTCGATGACATTTCAGAAAACCGGTGAT
GGAACCATGCTAAGACATATTGACCAACCATTCCTCTTTCATCTGCATTT
AGGCACATGAGGGATAGTTTGCTATTATCGTTATCAAGGGTCAATTTCTT
CAAAAGGCCACTTTGTTCTGCTGACATTGGGCGATCTGCTAGAGTAAATT
TTTCTTTAGTCTTCCGTGGAATGTTGACACATGAATGTATAGTACCTCCT
CCAGGTAATAACAGACCGGCTGCACTAGTGGGAGCAACATTCAATACAGC
ACGATTACATTGAAAAATTCGACGAACAAGACGTGTAATAATTTTTACAA
CCTGAGACTTACCTGTACCAGCACAACCCTGTATGATGAGTCTTTTACAA
TTGTCATATCCTACATTAAAATTCCCTCTGGCATATTCCAATAAAGTTTT
GATGTTGTAGTATACTATTAACATTTGAATGTGATTCACCAATTTTGGGT
CTACTTCTGGTAAATTACAAAGCCTTCCTTCTCTCTCATATGCTTCAGTT
GCTTGTTTAGATACATCTGACAGCCAGTTTTTTGTATCATTCATCTGTTC
TTCTGAAAACGACTGAACACCTAACCATCTCAAACCATTTTGATGCCAGT
CAAAATCATCTCCACCACTGTAGAGTACTTCTTCATCTACTGGGGCCTCT
TCAATAGATGCTCTGTTCTCTCTTGCAAAATCTCTTAGGAGGCGATTTCC
CATAGTGTCAATAACAGACTCTTGAGAGGCTTGACTATCCTGACTGTCTT
GGCTACAAACTGTTGAC Coding sequence (CDS) from alignment at scaffold_19:481249..482665 >TCONS_00050963 ID=TCONS_00050963|Name=TCONS_00050963|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_19:481249..482665 (Clytia hemisphaerica)
TCAATTGAAATATATCAccaaaaaattgaatgttggtataCAACCAAAAG
GGACATCACTCTCTGTATTTAAAAGATTCGATGACATTTCAGAAAACCGG
TGATGGAACCATGCTAAGACATATTGACCAACCATTCCTCTTTCATCTGC
ATTTAGGCACATGAGGGATAGTTTGCTATTATCGTTATCAAGGGTCAATT
TCTTCAAAAGGCCACTTTGTTCTGCTGACATTGGGCGATCTGCTAGAGTA
AATTTTTCTTTAGTCTTCCGTGGAATGTTGACACATGAATGTATAGTACC
TCCTCCAGGTAATAACAGACCGGCTGCACTAGTGGGAGCAACATTCAATA
CAGCACGATTACATTGAAAAATTCGACGAACAAGACGTGTAATAATTTTT
ACAACCTGAGACTTACCTGTACCAGCACAACCCTGTATGATGAGTCTTTT
ACAATTGTCATATCCTACATTAAAATTCCCTCTGGCATATTCCAATAAAG
TTTTGATGTTGTAGTATACTATTAACATTTGAATGTGATTCACCAATTTT
GGGTCTACTTCTGGTAAATTACAAAGCCTTCCTTCTCTCTCATATGCTTC
AGTTGCTTGTTTAGATACATCTGACAGCCAGTTTTTTGTATCATTCATCT
GTTCTTCTGAAAACGACTGAACACCTAACCATCTCAAACCATTTTGATGC
CAGTCAAAATCATCTCCACCACTGTAGAGTACTTCTTCATCTACTGGGGC
CTCTTCAATAGATGCTCTGTTCTCTCTTGCAAAATCTCTTAGGAGGCGAT
TTCCCATAGTGTCAATAACAGACTCTTGAGAGGCTTGACTATCCTGACTG
TCTTGGCTACAAACTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050963-exon-scaffold_19-1491911889:481249..482665 | TCONS_00050963-exon-scaffold_19-1491911889:481249..482665 | Clytia hemisphaerica | exon |
| TCONS_00050963-exon-scaffold_19-1510915933:481249..482665 | TCONS_00050963-exon-scaffold_19-1510915933:481249..482665 | Clytia hemisphaerica | exon |
| TCONS_00050963-exon-scaffold_19-1575043694:481249..482665 | TCONS_00050963-exon-scaffold_19-1575043694:481249..482665 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:481249..482665 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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