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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050932 ID=TCONS_00050932|Name=TCONS_00050932|organism=Clytia hemisphaerica|type=transcript|length=1065bp
AAAGAGAGTCTGTTACCTGTGGAAACGAATAAATCAGGGGTGTTCAATGC
AACCAGAAAGCTGTCTGAAATGAAGaaataaatatgaaaaaattgataaa
ttttttgcgataaaaagtggcaaacagaattgaaatcatttttgaagatt
tcgaaatttcattttcactcTTTTGTTGCTGTTTTTTGTTGTTGGAGAAG
ATTCTTCGTTTAAAGATCAAACCCAATCAACGAAATCATGCCACCCTTTG
CGATTTATTTATTGATATCCCACGCCCTTCTACACCTTCATTACGCCCAA
CCAACTAAGGCTGATATTGATGGGAAAGACAATGAAAAGCACGTGACTGC
AAACCCTAAAGAGACATTGGAAAACTCAGTAATCCCACTTTTGgaggaag
aagaaaaagaggAAATTGGGGCGCAAAATCCAACAAACGCCCAACAAAAC
GCCCAACGCAAACATCGTCAAGTAATCATCAAACGAGTTAAGCTGGCAGC
TTTGGCAAAAGACATTCCAACAGCAAAAGAAGGGGAGTTAGATTGTGAGA
TGATTCTTTCAGAAGAATGTTTTGGTGAATTATGTTTCCGCGGAATGTGC
ACTGAAAGGTGTATTCCTGTTGAGAGAAAAGTCtgcaaagattaaaaaaa
atagacAGTATAGGGAGGTTCCCAGTATGTTTGttactttaaaggaagaa
attgcagttgaaaaagaatttgatgGATTTCAGATAAATtcaccaaatta
agttcccgccaagaTTTATTTTTTGCGCGATCcgtgccaaatttaatttt
ttccataCATTCttcaaattcgatttttccAATACTACAGAAGCTTCGAA
AGTAAAgtaacgtcaaaaaatcgaTGGTTTGGAGCCCAAAAACCTGGGCT
ctttaaacattcaaaaaagttACTGCTTACAAAAAAGGCCGTGACGAAAT
GAAATTTCCGTCTATGTAAATGATATGTTTTTTATTCAGTAAGAAAATCT
TATTATCCTTTTTAAAATTTACTTATAACTAATGATATTTTAAACtatga
aaaaatactttcaaa Run BLAST on NCBI protein sequence of TCONS_00050932-protein >TCONS_00050932-protein ID=TCONS_00050932-protein|Name=TCONS_00050932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MPPFAIYLLISHALLHLHYAQPTKADIDGKDNEKHVTANPKETLENSVIP
LLEEEEKEEIGAQNPTNAQQNAQRKHRQVIIKRVKLAALAKDIPTAKEGE
LDCEMILSEECFGELCFRGMCTERCIPVERKVCKD Run BLAST on NCBI transcript from alignment at scaffold_19:726805..728542- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050932 ID=TCONS_00050932|Name=TCONS_00050932|organism=Clytia hemisphaerica|type=transcript|length=1738bp|location=Sequence derived from alignment at scaffold_19:726805..728542- (Clytia hemisphaerica)
AAAGAGAGTCTGTTACCTGTGGAAACGAATAAATCAGGGGTGTTCAATGC
AACCAGAAAGCTGTCTGAAATGAAGAAATAAATATGAAAAAATTGATAAA
TTTTTTGCGATAAAAAGTGGCAAACAGAATTGAAATCATTTTTGAAGATT
TCGAAATTTCATTTTCACTCTTTTGTTGCTGTTTTTTGTTGTTGGAGAAG
GTAAGAGTTGTATTTTTCAACCTATTTACTATAATTTTTCCGACGATTTA
GTAAACTCGGCTTCGTATATACCTAAGGCTTTAATTTTATTACTGATAGA
CGCCATAACCCAAATACTTTGAAAAAATCGCCTCTTCCCAGATTTAGAGA
TCATCAGCGAGGCCAAGCTCGTATCCAGTCCCCCAGCTCGCTTTTTGATT
ATTATGATAGCGCTCACGAACTGAGATGAGCTGGAGTTTCTACAAGATAC
TTCACTAATTGGTCATTTGAAATAAAAGAGATGACACGTTCTTTAGAAAA
AGTAACAAAATTTTCTTTATTACACGCTAACGACCAACCAAATCAAATAA
GAGCTTGTAAAAACTCCAGCTTGACCCCACGAACTAGGGGTATTGTACCA
CGTCCATCATTAAAATAAAAAAGTGATACGAGTGGCTCTGGGTACCAGAT
TGCAGCGATGCAAGGGGTTGGTGATCTTGCTCAATGGTCTATTCGCATTC
TATCCAAATCCATAATCACCCATAAAAGAAGCTTATGGTCAACCAGTAAG
CTCCACCCTAGGGCCTTCCTTCAATTTCTCTAAATTTTCTTTGACTTCTC
CTCTGATACTCCAGTCTCATTGATTCTTAAAATTACAAATATTGTTTTTA
CATTCTTCGCAAATTCTTCGCAGATTCTTCGTTTAAAGATCAAACCCAAT
CAACGAAATCATGCCACCCTTTGCGATTTATTTATTGATATCCCACGCCC
TTCTACACCTTCATTACGCCCAACCAACTAAGGCTGATATTGATGGGAAA
GACAATGAAAAGCACGTGACTGCAAACCCTAAAGAGACATTGGAAAACTC
AGTAATCCCACTTTTGGAGGAAGAAGAAAAAGAGGAAATTGGGGCGCAAA
ATCCAACAAACGCCCAACAAAACGCCCAACGCAAACATCGTCAAGTAATC
ATCAAACGAGTTAAGCTGGCAGCTTTGGCAAAAGACATTCCAACAGCAAA
AGAAGGGGAGTTAGATTGTGAGATGATTCTTTCAGAAGAATGTTTTGGTG
AATTATGTTTCCGCGGAATGTGCACTGAAAGGTGTATTCCTGTTGAGAGA
AAAGTCTGCAAAGATTAAAAAAAATAGACAGTATAGGGAGGTTCCCAGTA
TGTTTGTTACTTTAAAGGAAGAAATTGCAGTTGAAAAAGAATTTGATGGA
TTTCAGATAAATTCACCAAATTAAGTTCCCGCCAAGATTTATTTTTTGCG
CGATCCGTGCCAAATTTAATTTTTTCCATACATTCTTCAAATTCGATTTT
TCCAATACTACAGAAGCTTCGAAAGTAAAGTAACGTCAAAAAATCGATGG
TTTGGAGCCCAAAAACCTGGGCTCTTTAAACATTCAAAAAAGTTACTGCT
TACAAAAAAGGCCGTGACGAAATGAAATTTCCGTCTATGTAAATGATATG
TTTTTTATTCAGTAAGAAAATCTTATTATCCTTTTTAAAATTTACTTATA
ACTAATGATATTTTAAACTATGAAAAAATACTTTCAAA Coding sequence (CDS) from alignment at scaffold_19:726805..728542- >TCONS_00050932 ID=TCONS_00050932|Name=TCONS_00050932|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_19:726805..728542- (Clytia hemisphaerica)
ATGCCACCCTTTGCGATTTATTTATTGATATCCCACGCCCTTCTACACCT
TCATTACGCCCAACCAACTAAGGCTGATATTGATGGGAAAGACAATGAAA
AGCACGTGACTGCAAACCCTAAAGAGACATTGGAAAACTCAGTAATCCCA
CTTTTGGAGGAAGAAGAAAAAGAGGAAATTGGGGCGCAAAATCCAACAAA
CGCCCAACAAAACGCCCAACGCAAACATCGTCAAGTAATCATCAAACGAG
TTAAGCTGGCAGCTTTGGCAAAAGACATTCCAACAGCAAAAGAAGGGGAG
TTAGATTGTGAGATGATTCTTTCAGAAGAATGTTTTGGTGAATTATGTTT
CCGCGGAATGTGCACTGAAAGGTGTATTCCTGTTGAGAGAAAAGTCTGCA
AAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050932-exon-scaffold_19-1575043694:728343..728542 | TCONS_00050932-exon-scaffold_19-1575043694:728343..728542 | Clytia hemisphaerica | exon |
| TCONS_00050932-exon-scaffold_19-1575043694:726805..727669 | TCONS_00050932-exon-scaffold_19-1575043694:726805..727669 | Clytia hemisphaerica | exon |
| TCONS_00050932-exon-scaffold_19-1510915933:728343..728542 | TCONS_00050932-exon-scaffold_19-1510915933:728343..728542 | Clytia hemisphaerica | exon |
| TCONS_00050932-exon-scaffold_19-1510915933:726805..727669 | TCONS_00050932-exon-scaffold_19-1510915933:726805..727669 | Clytia hemisphaerica | exon |
| TCONS_00050932-exon-scaffold_19-1491911889:728343..728542 | TCONS_00050932-exon-scaffold_19-1491911889:728343..728542 | Clytia hemisphaerica | exon |
| TCONS_00050932-exon-scaffold_19-1491911889:726805..727669 | TCONS_00050932-exon-scaffold_19-1491911889:726805..727669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:726805..728542 - |
Blast
The following BLAST results are available for this feature:
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