TCONS_00050921 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050921
Unique Name	TCONS_00050921
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	795

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_19:596396..605336-

transcript sequence

>TCONS_00050921 ID=TCONS_00050921|Name=TCONS_00050921|organism=Clytia hemisphaerica|type=transcript|length=795bp
GCATCGGTTTGTTGTAACTCCGTGGACAATGAGATTTTTGCAAGGCATCA
TCGCTCTCACTCTATTGACAGGCCTTGGTCAGCTGTAACACAGTGGAAAA
AGATCAACAAGAAGCAAAGGAAGCTTTGAATAAATTATTGAAACAAGGGC
CATTAGGACACCTAATAGGCGACGGGTCGCAAACTTGTTTGATATGCGAG
TTCATTGTAGGAGAATTGATGTACCAACTAGAATCAAATACTGTCAAAaC
AGAAGTTCTACCAGCTCTTGAGGAGAAGATTTGCCAACTGTTATTTCCTT
CAAATGGTCTAAAGAAACGAGTTGTGACCTCTGGGtgcGAAGATGTTGCT
GACTTACTATTAAAAGCTTTGCTAAAAGTGTTAGATGACGACATCAAACC
GACACAAGTTTGCCAGAAACTCACCATATGTAAAAAAGATGAACTTGTCT
TTGCAAAGAAACGTCATTGAAAGGGTAAAACACCGACTTTGGATTGAAAA
TCTTCTGACAAACGAGATCTCATGACAGCTTGTGATATGATATCGAtcta
tttttggtcattttttggaaaaattttcccttcCAAAAATTTATGACTGG
ATGATTATTCTTTGTAagaattataaatttatttagattaagattttaat
ttttatttgaaaatttaggTTACAATGTTCACgaaataatttttcaacaa
ttttataACTATATTTAGATAACGGATTTcatagattttaatttttaaat
ctcCTTAATATTTTTGTAGACAAACGGAATTTCCTACCAAATTTG

Run BLAST on NCBI

transcript from alignment at scaffold_19:596396..605336-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050921 ID=TCONS_00050921|Name=TCONS_00050921|organism=Clytia hemisphaerica|type=transcript|length=8941bp|location=Sequence derived from alignment at scaffold_19:596396..605336- (Clytia hemisphaerica)
GCATCGGTTTGTTGTAACTCCGTGGACAATGAGATTTTTGCAAGGCATCA
TCGCTCTCACTCTATTGACAGGTTGAGTTTATCATTTCTTAATTTTTCTT
TTGAACTGAAGTCTCTTTTTCCTCTCAATGACACGTTGTTTCTTTATAAG
AACATAAGATTGCCAAAACATTAAGAACAAGTTTCATCAAGATGTGCAGA
CTTCTTAGCATAAAAAATATGAACATTTTTAGGCTTAAACCTCAAAAGTT
TAACAGCATCCGAAGGCTTAAAAAAGGTTGGACTTCCTTAGAGAGAGATT
AGGGAAAATTCATTAAGTGGTGGAAATTTGTTTGGGATGTAAGAAAAGTG
TTTACGCAGTGAAAATTCCAGGAAACCTCTTAGCCTAAATCCCTTTTAAA
TCATTACAAAATTAAAGTCTGTCAAAATAATTTGCAGCTGAGACAATCAA
AAGGTATCACACTTTCATGTTTCAACTCTATTTTTGATACTTAAACACCC
CCTTCTCACAGACCCACTGGGAACCCTTCCCATTGGAAAAATCGGCCTAA
ATATCGTCCCCGGTCGAAAATTATCCTCCTTTAGCCCCCACTAAAAATAA
TCAAATAAACCAATCCTCCCTGCAAAATATTATGCAATTCTTCCCAACCC
TACTGAATTTACTGACTTGAAAACAAAAGAATTGGAATCCCCAGCCATAG
AAATTACGGGATCCCCATCGAGTTTCTGTCTGTTTTTTTTTATCTCCACT
TGCTGAAAAAATCCTACCGGGTCCGTGAGAAGGGGATGTACTTAAGTACA
ACCTTGTTTCACAGACCCGCTGTTGGGAAAAAGTTCGACCGATGCTGTAA
GACACCCCTGTTTAAGTGACTTTTATCGTTTTGGTCATTTCAGCCTTGGT
CAGCTGTAACACAGTGGAAAAAGATCAACAAGAAGCAAAGGAAGCTTTGA
ATAAATTATTGAAACAAGGTATTTGCTTGGATATTGATGTTATAAAGAAA
GATAGGCTTTTCTATGGGAATCATTTCACATGTATATTGCCAAATATTAC
TTTGGTTGATTTGATTTCGAGCTTTGTGAAATAATTATTAAGCTTCTGAC
CTGAAACGTTAAGTGAAATTTTCTTAAATGAAAACGTTGACTTATATATT
TTAGATTTTGAAATTGAATTTATATCGGATTTTGAATTTCAAAGTCTTTG
AAATTAATTCATCGAGAACGTCACTTTGATTTAGGGGTATCTACTGTAGA
GGTGGTACCAATGTATTAAAGGGTTAAGATATATATTAATACCTAGGAAC
ATGGAGTCTAGCCTATTTCATGTGGTTATATCCCCTGTACCCTGTTTCAT
TGAATGAGAATGATTAATTATGAATTAAGTATGAATTGTTTGCATATTTA
ATTCTTTCAGGGCCATTAGGACACCTAATAGGCGACGGGTCGCAAACTTG
TTTGATATGCGAGTTCATTGTAGGAGAATTGATGTACCAACTAGAATCAA
ATACTGTCAAAGTGAGTACAATTTTACAAAAATGTACGGTAGAAACCTTT
TTTTCTGTCTTGAAGGGCTTGAAAAATGTTACTTAAATTTAGCTAACTAG
TGCTCAGCAATCGACCAGAATATTTATTTTCGCACTATTTTACTCACTTT
TCCGCCGAGCCACTTGGCCTGTTAATCTTAAACATTTTTTGATCGATCAG
TGAAATGTCCATTTGGAGCTAAGCCCAATCGGGAAAACGCCTGGTCGGGG
AAAACGTTCGGCAGCATATTTGAAACTTTATCAATATTAATTTTCTCCAT
TCATGCGAAAAGTATTACAAATAACGTAATCAGGAATCATCTTTCGAGTG
ATTATTTCGGTCACAGGCCTTTTTCAAAATTTATTCATATAGAAGTTTGT
AAATGTTTCGATATATAGGGAGCCTCATTATATAACAATTAAGAAGAAAA
CAGTAGAATAATTTCATGTCTTCAGACGATCATCAACTGCAATATGTGAA
AACTTGATTTATACGAATCTAATTTTTATCAAATTATAGACAGAAGTTCT
ACCAGCTATCGAAGAGAAGATTTGCCAACTGTTATTTCCTTCAAATGGTC
TAAAGAAACGGGTCGTGACTTCTGGGGTAAGTTTAATAAATCCGTCTGCT
ACTTAATTTAAGGCTAACCAAAACTTCTTCTTTGCTACAATGTGGAAACC
ATCCTCAAGGCCATTGGTCTAATAACCTAACATGGTTTACAGATTGCAGC
AAAAGAAAGTAAATTCGCTTTAAAGCGAATGGACTTGAGCTTGTGAGAAT
TCCCTTTTGGAAAAAAGTGCAAGAACTAATGTTGCGGAAAGGTATGCTAT
TCGGTAGCTTTGATTATTTTTTGCATAAAATAGATAAGTAAATTAGGTTT
AAATTTTAAATATAATTATTTTAGAATGTAATGAAAAATAATAAAAAAAT
GAAATTTATAGCTAACAGTAACCTGCAGTCGAATAACTGTAGTAGATTAT
CAAGGATAGGAGAACTTTATGTTATTTTTTAATGTATGTCATAAGATTAA
AATTAATTTTTTTTCAATTAATTCTTCTTGGGCCAATCAAGAAGAGAATG
CTCAACATTTAAAAAGACTCAAGATTTTAATGAAAACCATCATTTAGGAA
ATATATACCCTTACTGCTTAGAAATTTCTTTTATGGAAGCTGTTAACAAA
AGAAGAGAAAAGGGTCAATTAACCTCGTGACATACCTTAATGTGAACTGC
ATTACAGCTTCTCACAAAAATAGAAAATCTTTACCATTGGAAACCCACCA
GTATTTTGAAAACGTGGTTTTAGTGACTCTAACCAACTTTATAAACATTA
TGTTTTTTTTTAACTTTTTTGTGGCAATGTTAGCGGATTTCGAGAAATAA
ATTTTGAAATTAGATTAATATTCTCACAAGTCAGGACTATGAGAAAAATA
TTTTCTCTTTTAAAATAAACTTATAACCTGAGAACCTAGAGACTTCGATC
TAAATTTGACAATGCATTAGACAAAAACACGGAAAATCGACTACGCAAAA
ATCACAACCTCTTTACTCAGCAGTAACTTTCCCCACTTTTTCACCAATGA
GTTTATTTATGTTGGCTTGTACCATCCCGTTTTGATTCTGTTGAATATAT
CTATTAGAATATTTAATAGGATTCGTAGAAAGGGGGGGGGACAAAATTTG
TGTAGGAGAGCATATTTTATGACACTGTTATCATCTATTCATAATATAAT
TACAGTGTCATAGAATAAGTCTGCCCTCCTACACAGATTTTTCACCCCTC
CTGTCTACGGTACTGGATTCGGGCATCTTTTTGCATCTTTTTCGTAAAAT
GCACAGATCTGTGCAGATTTCCCGCGACAAGAATTTTTGTCATTTGTTCA
ATTGACTTGGAAATTCATGAGCTCTTTTCTATTCCCATTTCCTTTGTAAA
TTTTAACCCAAATGCGCAAGAGAGTGTTCAACCATAAATAAGATGAACAC
ATAGGAATCACACCCTTCAGAAATTCTGCACTTAGTGAACATTATTTCTA
CACCTGTGTCGGGTTGAATCTGTAATTTGAGTGGTCAATAGAGCATCCCA
AGTCAATAGAGCAATCCTACTGTACATAATTAATAAGAAATCAATATTTT
AGGGAATTTCCATCAGCCCCGCAAAAACCCCGCCCGATTCTTTTTTGATA
TTTTTAATCCTTTTAATGACCTCTGTCACCCGCTTTTTATTTGAAATTGA
TATCTCATGCAATAATTTTTCATTGAAAAATTAAACAAAAAGAGTTATTT
TTTTCTATTAGTGCGAAGATGTTGCTGACTTACTATTAAAAAACCATTAC
CAGCTGATAACTTCAAATAAAAGAGTACGAAAGAGATTCCGAATAGTGAA
TTCATTATCATAATCTTGATCAGAAAATTGACAACGAATTGNCCCCTATA
TTCCTCAATAACATTTTAAGGATAAAACTTCACAACGACACAAGAGTAGC
TTTAACAGAATTCCAAGAAAGCTCTAGGCTTAAATCAATTTTAAAGGAAA
TTCCTTTCATGTTTCAATTTTATGATAATTTAGTTATTTTTATTGCTTTG
ATCTCTTTAGCATCGGTTAGTTGTAACTCCGTGGACAATGAGATTTTTAC
AAGGCATCATCGCTCTCACTCTATTGACAGGTTGAGTTTATCATTTCTTA
AATTTTTTTTTTGAACTGAAGCCTCTTTTTCCTCTCAATAACACGTTGTT
TCTTTATAAGAACATAAGATTGACAAAACATTAAGAACAAGTTTCATCAA
GATTTGTAGACTTCTTAGCATAAAAAATATGAACATTTTTAGGCTTAAAC
CTCAAAAGTTTAACAGCACCCGAAGGCTTCAAAAAGGTTGGACTTCCTTA
GAGAGAGATTAGGGAAAACTCATTAAGTGGTGGATATTTGTTTGGGATGT
AAGAAAAGTTAATACGCAGTGAAAATTCCAGGAAACCTCTTCGCCTGAAT
CCCTTTTAAATCATTACAAAATTAAATTCTGTCTCAAAATAATTTGCAGC
TGAGACAATCAAAAGATATCACACTTTCATGTTTCAACAACTAGTTTTTG
ATACTTAAACACCCCCTTTTCACAGACCCACTGGGAACCTTTCCCATTGG
AAAAATTGGCCTAAATATCGTCCCCGGTGGAAATTATCCTCCTCTAGCCC
CCACCGAAAATAATCAGATAAACCATCCTCCCTGCAAATTATTATGCAAT
TCTTCCCAGCCCAACTGAATTTTCTGACTTAAAAACAAAAGAATTTTAAT
CCCAGCCGTAGAAATTATGGAATCCCCATCGAGTTTCTGTCTGTTTTTTT
TTATCTCCACTGGCTGAAAAAATCTTACCGGGTCCGTGAGAAGGGGGTGT
ACTTAAGTACAACCCTGTTTAACAGACCCGCTGTGGGGAAAAAGTTCGAC
CGATGCTGTAAGACGGGTGTTTAAGTGATTTTTATCGTTTTGATCTTTTT
TAGCCTTAGTCAGTTGTAACACAGAGGAAAAAGATCAAGAAAAAGCAAAA
GAAGCTTTGAATAAATTATTGAAACAAGGTATTTGCTTGGATATTGGATG
TTATAAAGAACGATAGGCTTTTCTAGGGGAATAATTTCATTCTTCACTGT
TCAACTCTCTAGGACCTGGTGACCATATATTACTTTGGTTGATTTCGAAC
TTTGTGAAAAAATAAATAAGCTTCTGACCTGAAACTTTAAGCAAAAGCTT
CTTAAACAAAAACGCTGACTTTAACCTTTCAAAAGCGGGCGTCAGTATTT
AAGATTTTGGGATTGAATATATCGAATTTTGAATTTTAAAGTCTTTGAAA
TTAGGGATATCCGAAATTAGTTTATCGATGCCTAAGGGCATTGATTAAAA
AGGAATTTTGTTTGACATCAAAGAGCATCGATCAAGGTGAATCAGTCCAG
GAGTCCTCAGCGAACTGTTTTTTCAAACATAAAAGACGATTAAAATGGGA
GTGACCTTAATACTCTAAGATCTTGAATATCTCATGGCGTGTACCTAGGG
CTCGGCTAACTCGAAAAATCCATCTTCCTAATAATGGGGTCACAATTAGC
CCTAAACATAGCCTATTTCATGTAAATATATCCGCTTACCCTGTTTCATT
GAATGAGAATGATTGATTATGAATTAAGGTATGAATTGGTTGCATATTTA
ATTCTTTCAGGGCCATTAGGACACCTAATAGGCGACGGTTCACAAACTTG
TTTGATATGCGAGTTCATTGTAGGAGAGTTGATGTACCAACTAGAATCAA
ATACTGTCAAAGTGAGTACAGTTTTACAAAAATGTACGATAGAAACCTTA
TTTTCTGTTTTGAATGGTCTTGAAAAATGTTACTTAAATTTAGCTGCTTA
GTGCTCGGCAATAGACAATTTATTTTCACCCCATTTTACTCCTTTTTCCA
GAGGGCCACTTGGTCTGTTGATCTTAAATATCTTTTGATCGATCAGGGAA
ATATCCCTTTGAAGCAAAGCCCGATCGGGAAAACGCCTGGTCGGGGAAAA
CGTCCGGTAGCATATTTATAACTCTATCCATATCAATTTTCTCCGTTCAT
GCGAAAAGTATTCCAAATAACGTAATCAGGAATCATCTTTCGAGTGATTA
TTTAGGTCACAGGCCTTTTTCAAACTTTATTCATATCGAAGTTTGTAAAT
GTTTCGATATATAGGGAGCCTCATTGGACATAACAGTTATGAAGAAAACA
GTAGAACGGTTTCATGCCTTTAGACAATCATCAGCTACAATATGTGAAAA
CTTGTTTTAAACAATTCTAATTTTTATCAAATTTTAGACAGAAGTTCTAC
CAGCTCTTGAGGAGAAGATTTGCCAACTGTTATTTCCTTCAAATGGTCTA
AAGAAACGAGTTGTGACCTCTGGGGTAAGTATAGTAATTCCGTCTTCTAC
TTAATTTAAGGTTAATCAAAACTTCTTTGCTACCACGAGGAAACCATCCT
CAAGACGTTGGCCGATAAGGTATGAGAAAAATTCTCTTAACACAACTTAT
AACCTAAGAACCTAGAGACTTCGATCTAAATTTGACAATGCATAAGGCAA
AAACGCTTTAAAATCGACTACGTAAAAATCACACCCTCTTTACTCAGCAA
CTTTACCCACTTATAATACACCCTGTGTCACAGACCCATTGGGACCCCAG
CCCTACTAGAAATTTCGTCCCTGGTGAAAAAGTGCCCAGGAATTTCAGCC
CCACTAGGAAATTGACTTTCATTTCATCCCACCCGAAAATTCGATTTCTA
AAAAGTGCACTCAAAAACTATTCCCACTGGATTTTTTAACCTTGGAACAA
TAGAATTTCTATCCTATTGGGATTTTAGTAGGAATATTTATCGGCTTGCA
TACGTAATTTGAGTCGATTCTCAAGTCTACAAAGCAATCAAAATCAATAT
TTTACACCAGCCCCGCAAAAAAACACGCCTTTTTCGAATTTTTCTCGATA
TTTTTAATCGTACTAATGACCTCTGTCACCCAGTTTTTATTTGAAATTGA
AATCTTCTGCAATGATTTTTCATTGATTACGTTAAAAAAAAGAAAAATTA
AACAAAAAAGAGTTATTTTTTTCTTTTAGTGCGAAGATGTTGCTGACTTA
CTATTAAAAGCTTTGCTAAAAGTGTTAGATGACGACATCAAACCGACACA
AGTTTGCCAGAAACTCACCATATGTAAAAAGTAAGTCTTTATCATCCATG
ACACTCGATTTAGACATTTTCCTCCGACATGCCCTATAACTCTGAAGGTC
GGAAAAATTACTTGTGTTTCTAAAGGGTCCCGAAACATAGAAAATATCGA
ACCTAATTCATTATATAAATTACGTAACGTTTTCTACAGAAACCTCTGTT
TTTTTTGTTAGTAGTTGCAGATTTCACACAACATTTATATTTCGCTTAAA
TTTGCCACTTCTGGTTAAAACCACGGTGCCTCTGTAGAATACTTAACGTC
ATGAATAAAGACATCATCGTGCCCGATTCTATTATCGTCATGGTAGAATA
AAGAGTCCCCCTAACTCAAACCAAGGTTATATCTACCTTTACATTCCAAT
TCAAAGCTCTCTCTATAGAGCCCAGGGAAGGGGTACTTAGGTGAAATAGG
TGTCAGGTATGTATAAGCCATAAGGGTCCCATTTTCACAACCTCGAAAGT
CTCACAGAGGGGTACAAAAACCATTTAAAAGAAAATTGAGTCTCTGTAAA
GGTCCAAAATTCATGAAAATTTCCTCTTTCTTTGCTCGGATATACCCGTC
AACTCGCAAACCTAGTAGCCCCCCCCCCCCCGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGGGGGGGGGGGTACTAGGGTTGGCGAATGAG
GGGTATGTACGGACGGGACCTCCGAAAGCCGACCCTAAGAGAGACTAATT
TTTGCTGAAAAGGTGACCCTTAGAGAGACTGATTTTTGCTGAAGAGGTGA
CCCTTAGAGAGACTGATTTTTGTTGAAAAGGTGACCCTTAGAGAGACTTT
TTGAATTCTATTTTCGATTTTTGAAAAAAGTCATACCCTTAGAGAGACTT
TATTACAATTTTTCTATGGAAATCAAAAAATTTCCTAAAAATCCTGAATT
TTCCGACCCTTAGAGAGACTAATTTAAAACTTTCTGATTTTTCCGACCCT
TAAAGAGACTTTGAAAGGTGAAAAAAACCGACCCTTATCGTCCGCACATA
CCCATCATCCATTTTTGCCTAAGTACCCCGGGCTTTTGGTGATCCGTGAA
TAAACTACGTTCTTTTTTTTGTTCTCTTTCAGAGATGAACTTGTCTTTGC
AAAGAAACGTCATTGAAAGGGTAAAACACCGACTTTGGATTGAAAATCTT
CTGACAAACGAGATCTCATGACAGCTTGTGATATGATATCGATCTATTTT
TGGTCATTTTTTGGAAAAATTTTCCCTTCCAAAAATTTATGACTGGATGA
TTATTCTTTGTAAGAATTATAAATTTATTTAGATTAAGATTTTAATTTTT
ATTTGAAAATTTAGGTTACAATGTTCACGAAATAATTTTTCAACAATTTT
ATAACTATATTTAGATAACGGATTTCATAGATTTTAATTTTTAAATCTCC
TTAATATTTTTGTAGACAAACGGAATTTCCTACCAAATTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032268	XLOC_032268	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:596396..605336 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.440937	0.389191	2.43322	3.37522	3.50916	3.06814	4.53781	2.55205	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00050921 vs. Swiss-Prot (Human)

BLAST of TCONS_00050921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00050921 (transcript) - C. hemisphaerica