TCONS_00050918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050918
Unique NameTCONS_00050918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050918 ID=TCONS_00050918|Name=TCONS_00050918|organism=Clytia hemisphaerica|type=transcript|length=676bp
GAAGCTTTGAATAAATTATTGAAACAAGGGCCATTAGGACACCTAATAGG
CGACGGTTCACAAACTTGTTTGATATGCGAGTTCATTGTAGGAGAGTTGA
TGTACCAACTAGAATCAAATACTGTCAAAaCAGAAGTTCTACCAGCTCTT
GAGGAGAAGATTTGCCAACTGTTATTTCCTTCAAATGGTCTAAAGAAACG
AGTTGTGACCTCTGGGtgcGAAGATGTTGCTGACTTACTATTAAAAGCTT
TGCTAAAAGTGTTAGATGACGACATCAAACCGACACAAGTTTGCCAGAAA
CTCACCATATGTAAAAAAGATGAACTTGTCTTTGCAAAGAAACGTCATTG
AAAGGGTAAAACACCGACTTTGGATTGAAAATCTTCTGACAAACGAGATC
TCATGACAGCTTGTGATATGATATCGAtctatttttggtcattttttgga
aaaattttcccttcCAAAAATTTATGACTGGATGATTATTCTTTGTAaga
attataaatttatttagattaagattttaatttttatttgaaaatttagg
TTACAATGTTCACgaaataatttttcaacaattttataACTATATTTAGA
TAACGGATTTcatagattttaatttttaaatctcCTTAATATTTTTGTAG
ACAAACGGAATTTCCTACCAAATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_19:596396..604396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050918 ID=TCONS_00050918|Name=TCONS_00050918|organism=Clytia hemisphaerica|type=transcript|length=8001bp|location=Sequence derived from alignment at scaffold_19:596396..604396- (Clytia hemisphaerica)
GAAGCTTTGAATAAATTATTGAAACAAGGTATTTGCTTGGATATTGATGT
TATAAAGAAAGATAGGCTTTTCTATGGGAATCATTTCACATGTATATTGC
CAAATATTACTTTGGTTGATTTGATTTCGAGCTTTGTGAAATAATTATTA
AGCTTCTGACCTGAAACGTTAAGTGAAATTTTCTTAAATGAAAACGTTGA
CTTATATATTTTAGATTTTGAAATTGAATTTATATCGGATTTTGAATTTC
AAAGTCTTTGAAATTAATTCATCGAGAACGTCACTTTGATTTAGGGGTAT
CTACTGTAGAGGTGGTACCAATGTATTAAAGGGTTAAGATATATATTAAT
ACCTAGGAACATGGAGTCTAGCCTATTTCATGTGGTTATATCCCCTGTAC
CCTGTTTCATTGAATGAGAATGATTAATTATGAATTAAGTATGAATTGTT
TGCATATTTAATTCTTTCAGGGCCATTAGGACACCTAATAGGCGACGGGT
CGCAAACTTGTTTGATATGCGAGTTCATTGTAGGAGAATTGATGTACCAA
CTAGAATCAAATACTGTCAAAGTGAGTACAATTTTACAAAAATGTACGGT
AGAAACCTTTTTTTCTGTCTTGAAGGGCTTGAAAAATGTTACTTAAATTT
AGCTAACTAGTGCTCAGCAATCGACCAGAATATTTATTTTCGCACTATTT
TACTCACTTTTCCGCCGAGCCACTTGGCCTGTTAATCTTAAACATTTTTT
GATCGATCAGTGAAATGTCCATTTGGAGCTAAGCCCAATCGGGAAAACGC
CTGGTCGGGGAAAACGTTCGGCAGCATATTTGAAACTTTATCAATATTAA
TTTTCTCCATTCATGCGAAAAGTATTACAAATAACGTAATCAGGAATCAT
CTTTCGAGTGATTATTTCGGTCACAGGCCTTTTTCAAAATTTATTCATAT
AGAAGTTTGTAAATGTTTCGATATATAGGGAGCCTCATTATATAACAATT
AAGAAGAAAACAGTAGAATAATTTCATGTCTTCAGACGATCATCAACTGC
AATATGTGAAAACTTGATTTATACGAATCTAATTTTTATCAAATTATAGA
CAGAAGTTCTACCAGCTATCGAAGAGAAGATTTGCCAACTGTTATTTCCT
TCAAATGGTCTAAAGAAACGGGTCGTGACTTCTGGGGTAAGTTTAATAAA
TCCGTCTGCTACTTAATTTAAGGCTAACCAAAACTTCTTCTTTGCTACAA
TGTGGAAACCATCCTCAAGGCCATTGGTCTAATAACCTAACATGGTTTAC
AGATTGCAGCAAAAGAAAGTAAATTCGCTTTAAAGCGAATGGACTTGAGC
TTGTGAGAATTCCCTTTTGGAAAAAAGTGCAAGAACTAATGTTGCGGAAA
GGTATGCTATTCGGTAGCTTTGATTATTTTTTGCATAAAATAGATAAGTA
AATTAGGTTTAAATTTTAAATATAATTATTTTAGAATGTAATGAAAAATA
ATAAAAAAATGAAATTTATAGCTAACAGTAACCTGCAGTCGAATAACTGT
AGTAGATTATCAAGGATAGGAGAACTTTATGTTATTTTTTAATGTATGTC
ATAAGATTAAAATTAATTTTTTTTCAATTAATTCTTCTTGGGCCAATCAA
GAAGAGAATGCTCAACATTTAAAAAGACTCAAGATTTTAATGAAAACCAT
CATTTAGGAAATATATACCCTTACTGCTTAGAAATTTCTTTTATGGAAGC
TGTTAACAAAAGAAGAGAAAAGGGTCAATTAACCTCGTGACATACCTTAA
TGTGAACTGCATTACAGCTTCTCACAAAAATAGAAAATCTTTACCATTGG
AAACCCACCAGTATTTTGAAAACGTGGTTTTAGTGACTCTAACCAACTTT
ATAAACATTATGTTTTTTTTTAACTTTTTTGTGGCAATGTTAGCGGATTT
CGAGAAATAAATTTTGAAATTAGATTAATATTCTCACAAGTCAGGACTAT
GAGAAAAATATTTTCTCTTTTAAAATAAACTTATAACCTGAGAACCTAGA
GACTTCGATCTAAATTTGACAATGCATTAGACAAAAACACGGAAAATCGA
CTACGCAAAAATCACAACCTCTTTACTCAGCAGTAACTTTCCCCACTTTT
TCACCAATGAGTTTATTTATGTTGGCTTGTACCATCCCGTTTTGATTCTG
TTGAATATATCTATTAGAATATTTAATAGGATTCGTAGAAAGGGGGGGGG
ACAAAATTTGTGTAGGAGAGCATATTTTATGACACTGTTATCATCTATTC
ATAATATAATTACAGTGTCATAGAATAAGTCTGCCCTCCTACACAGATTT
TTCACCCCTCCTGTCTACGGTACTGGATTCGGGCATCTTTTTGCATCTTT
TTCGTAAAATGCACAGATCTGTGCAGATTTCCCGCGACAAGAATTTTTGT
CATTTGTTCAATTGACTTGGAAATTCATGAGCTCTTTTCTATTCCCATTT
CCTTTGTAAATTTTAACCCAAATGCGCAAGAGAGTGTTCAACCATAAATA
AGATGAACACATAGGAATCACACCCTTCAGAAATTCTGCACTTAGTGAAC
ATTATTTCTACACCTGTGTCGGGTTGAATCTGTAATTTGAGTGGTCAATA
GAGCATCCCAAGTCAATAGAGCAATCCTACTGTACATAATTAATAAGAAA
TCAATATTTTAGGGAATTTCCATCAGCCCCGCAAAAACCCCGCCCGATTC
TTTTTTGATATTTTTAATCCTTTTAATGACCTCTGTCACCCGCTTTTTAT
TTGAAATTGATATCTCATGCAATAATTTTTCATTGAAAAATTAAACAAAA
AGAGTTATTTTTTTCTATTAGTGCGAAGATGTTGCTGACTTACTATTAAA
AAACCATTACCAGCTGATAACTTCAAATAAAAGAGTACGAAAGAGATTCC
GAATAGTGAATTCATTATCATAATCTTGATCAGAAAATTGACAACGAATT
GNCCCCTATATTCCTCAATAACATTTTAAGGATAAAACTTCACAACGACA
CAAGAGTAGCTTTAACAGAATTCCAAGAAAGCTCTAGGCTTAAATCAATT
TTAAAGGAAATTCCTTTCATGTTTCAATTTTATGATAATTTAGTTATTTT
TATTGCTTTGATCTCTTTAGCATCGGTTAGTTGTAACTCCGTGGACAATG
AGATTTTTACAAGGCATCATCGCTCTCACTCTATTGACAGGTTGAGTTTA
TCATTTCTTAAATTTTTTTTTTGAACTGAAGCCTCTTTTTCCTCTCAATA
ACACGTTGTTTCTTTATAAGAACATAAGATTGACAAAACATTAAGAACAA
GTTTCATCAAGATTTGTAGACTTCTTAGCATAAAAAATATGAACATTTTT
AGGCTTAAACCTCAAAAGTTTAACAGCACCCGAAGGCTTCAAAAAGGTTG
GACTTCCTTAGAGAGAGATTAGGGAAAACTCATTAAGTGGTGGATATTTG
TTTGGGATGTAAGAAAAGTTAATACGCAGTGAAAATTCCAGGAAACCTCT
TCGCCTGAATCCCTTTTAAATCATTACAAAATTAAATTCTGTCTCAAAAT
AATTTGCAGCTGAGACAATCAAAAGATATCACACTTTCATGTTTCAACAA
CTAGTTTTTGATACTTAAACACCCCCTTTTCACAGACCCACTGGGAACCT
TTCCCATTGGAAAAATTGGCCTAAATATCGTCCCCGGTGGAAATTATCCT
CCTCTAGCCCCCACCGAAAATAATCAGATAAACCATCCTCCCTGCAAATT
ATTATGCAATTCTTCCCAGCCCAACTGAATTTTCTGACTTAAAAACAAAA
GAATTTTAATCCCAGCCGTAGAAATTATGGAATCCCCATCGAGTTTCTGT
CTGTTTTTTTTTATCTCCACTGGCTGAAAAAATCTTACCGGGTCCGTGAG
AAGGGGGTGTACTTAAGTACAACCCTGTTTAACAGACCCGCTGTGGGGAA
AAAGTTCGACCGATGCTGTAAGACGGGTGTTTAAGTGATTTTTATCGTTT
TGATCTTTTTTAGCCTTAGTCAGTTGTAACACAGAGGAAAAAGATCAAGA
AAAAGCAAAAGAAGCTTTGAATAAATTATTGAAACAAGGTATTTGCTTGG
ATATTGGATGTTATAAAGAACGATAGGCTTTTCTAGGGGAATAATTTCAT
TCTTCACTGTTCAACTCTCTAGGACCTGGTGACCATATATTACTTTGGTT
GATTTCGAACTTTGTGAAAAAATAAATAAGCTTCTGACCTGAAACTTTAA
GCAAAAGCTTCTTAAACAAAAACGCTGACTTTAACCTTTCAAAAGCGGGC
GTCAGTATTTAAGATTTTGGGATTGAATATATCGAATTTTGAATTTTAAA
GTCTTTGAAATTAGGGATATCCGAAATTAGTTTATCGATGCCTAAGGGCA
TTGATTAAAAAGGAATTTTGTTTGACATCAAAGAGCATCGATCAAGGTGA
ATCAGTCCAGGAGTCCTCAGCGAACTGTTTTTTCAAACATAAAAGACGAT
TAAAATGGGAGTGACCTTAATACTCTAAGATCTTGAATATCTCATGGCGT
GTACCTAGGGCTCGGCTAACTCGAAAAATCCATCTTCCTAATAATGGGGT
CACAATTAGCCCTAAACATAGCCTATTTCATGTAAATATATCCGCTTACC
CTGTTTCATTGAATGAGAATGATTGATTATGAATTAAGGTATGAATTGGT
TGCATATTTAATTCTTTCAGGGCCATTAGGACACCTAATAGGCGACGGTT
CACAAACTTGTTTGATATGCGAGTTCATTGTAGGAGAGTTGATGTACCAA
CTAGAATCAAATACTGTCAAAGTGAGTACAGTTTTACAAAAATGTACGAT
AGAAACCTTATTTTCTGTTTTGAATGGTCTTGAAAAATGTTACTTAAATT
TAGCTGCTTAGTGCTCGGCAATAGACAATTTATTTTCACCCCATTTTACT
CCTTTTTCCAGAGGGCCACTTGGTCTGTTGATCTTAAATATCTTTTGATC
GATCAGGGAAATATCCCTTTGAAGCAAAGCCCGATCGGGAAAACGCCTGG
TCGGGGAAAACGTCCGGTAGCATATTTATAACTCTATCCATATCAATTTT
CTCCGTTCATGCGAAAAGTATTCCAAATAACGTAATCAGGAATCATCTTT
CGAGTGATTATTTAGGTCACAGGCCTTTTTCAAACTTTATTCATATCGAA
GTTTGTAAATGTTTCGATATATAGGGAGCCTCATTGGACATAACAGTTAT
GAAGAAAACAGTAGAACGGTTTCATGCCTTTAGACAATCATCAGCTACAA
TATGTGAAAACTTGTTTTAAACAATTCTAATTTTTATCAAATTTTAGACA
GAAGTTCTACCAGCTCTTGAGGAGAAGATTTGCCAACTGTTATTTCCTTC
AAATGGTCTAAAGAAACGAGTTGTGACCTCTGGGGTAAGTATAGTAATTC
CGTCTTCTACTTAATTTAAGGTTAATCAAAACTTCTTTGCTACCACGAGG
AAACCATCCTCAAGACGTTGGCCGATAAGGTATGAGAAAAATTCTCTTAA
CACAACTTATAACCTAAGAACCTAGAGACTTCGATCTAAATTTGACAATG
CATAAGGCAAAAACGCTTTAAAATCGACTACGTAAAAATCACACCCTCTT
TACTCAGCAACTTTACCCACTTATAATACACCCTGTGTCACAGACCCATT
GGGACCCCAGCCCTACTAGAAATTTCGTCCCTGGTGAAAAAGTGCCCAGG
AATTTCAGCCCCACTAGGAAATTGACTTTCATTTCATCCCACCCGAAAAT
TCGATTTCTAAAAAGTGCACTCAAAAACTATTCCCACTGGATTTTTTAAC
CTTGGAACAATAGAATTTCTATCCTATTGGGATTTTAGTAGGAATATTTA
TCGGCTTGCATACGTAATTTGAGTCGATTCTCAAGTCTACAAAGCAATCA
AAATCAATATTTTACACCAGCCCCGCAAAAAAACACGCCTTTTTCGAATT
TTTCTCGATATTTTTAATCGTACTAATGACCTCTGTCACCCAGTTTTTAT
TTGAAATTGAAATCTTCTGCAATGATTTTTCATTGATTACGTTAAAAAAA
AGAAAAATTAAACAAAAAAGAGTTATTTTTTTCTTTTAGTGCGAAGATGT
TGCTGACTTACTATTAAAAGCTTTGCTAAAAGTGTTAGATGACGACATCA
AACCGACACAAGTTTGCCAGAAACTCACCATATGTAAAAAGTAAGTCTTT
ATCATCCATGACACTCGATTTAGACATTTTCCTCCGACATGCCCTATAAC
TCTGAAGGTCGGAAAAATTACTTGTGTTTCTAAAGGGTCCCGAAACATAG
AAAATATCGAACCTAATTCATTATATAAATTACGTAACGTTTTCTACAGA
AACCTCTGTTTTTTTTGTTAGTAGTTGCAGATTTCACACAACATTTATAT
TTCGCTTAAATTTGCCACTTCTGGTTAAAACCACGGTGCCTCTGTAGAAT
ACTTAACGTCATGAATAAAGACATCATCGTGCCCGATTCTATTATCGTCA
TGGTAGAATAAAGAGTCCCCCTAACTCAAACCAAGGTTATATCTACCTTT
ACATTCCAATTCAAAGCTCTCTCTATAGAGCCCAGGGAAGGGGTACTTAG
GTGAAATAGGTGTCAGGTATGTATAAGCCATAAGGGTCCCATTTTCACAA
CCTCGAAAGTCTCACAGAGGGGTACAAAAACCATTTAAAAGAAAATTGAG
TCTCTGTAAAGGTCCAAAATTCATGAAAATTTCCTCTTTCTTTGCTCGGA
TATACCCGTCAACTCGCAAACCTAGTAGCCCCCCCCCCCCCGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGTACTAGGGTT
GGCGAATGAGGGGTATGTACGGACGGGACCTCCGAAAGCCGACCCTAAGA
GAGACTAATTTTTGCTGAAAAGGTGACCCTTAGAGAGACTGATTTTTGCT
GAAGAGGTGACCCTTAGAGAGACTGATTTTTGTTGAAAAGGTGACCCTTA
GAGAGACTTTTTGAATTCTATTTTCGATTTTTGAAAAAAGTCATACCCTT
AGAGAGACTTTATTACAATTTTTCTATGGAAATCAAAAAATTTCCTAAAA
ATCCTGAATTTTCCGACCCTTAGAGAGACTAATTTAAAACTTTCTGATTT
TTCCGACCCTTAAAGAGACTTTGAAAGGTGAAAAAAACCGACCCTTATCG
TCCGCACATACCCATCATCCATTTTTGCCTAAGTACCCCGGGCTTTTGGT
GATCCGTGAATAAACTACGTTCTTTTTTTTGTTCTCTTTCAGAGATGAAC
TTGTCTTTGCAAAGAAACGTCATTGAAAGGGTAAAACACCGACTTTGGAT
TGAAAATCTTCTGACAAACGAGATCTCATGACAGCTTGTGATATGATATC
GATCTATTTTTGGTCATTTTTTGGAAAAATTTTCCCTTCCAAAAATTTAT
GACTGGATGATTATTCTTTGTAAGAATTATAAATTTATTTAGATTAAGAT
TTTAATTTTTATTTGAAAATTTAGGTTACAATGTTCACGAAATAATTTTT
CAACAATTTTATAACTATATTTAGATAACGGATTTCATAGATTTTAATTT
TTAAATCTCCTTAATATTTTTGTAGACAAACGGAATTTCCTACCAAATTT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032268XLOC_032268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050918-exon-scaffold_19-1575043694:604369..604396TCONS_00050918-exon-scaffold_19-1575043694:604369..604396Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1575043694:599526..599626TCONS_00050918-exon-scaffold_19-1575043694:599526..599626Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1575043694:598913..598999TCONS_00050918-exon-scaffold_19-1575043694:598913..598999Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1575043694:598107..598207TCONS_00050918-exon-scaffold_19-1575043694:598107..598207Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1575043694:596396..596754TCONS_00050918-exon-scaffold_19-1575043694:596396..596754Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1510915933:604369..604396TCONS_00050918-exon-scaffold_19-1510915933:604369..604396Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1510915933:599526..599626TCONS_00050918-exon-scaffold_19-1510915933:599526..599626Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1510915933:598913..598999TCONS_00050918-exon-scaffold_19-1510915933:598913..598999Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1510915933:598107..598207TCONS_00050918-exon-scaffold_19-1510915933:598107..598207Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1510915933:596396..596754TCONS_00050918-exon-scaffold_19-1510915933:596396..596754Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1491911889:604369..604396TCONS_00050918-exon-scaffold_19-1491911889:604369..604396Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1491911889:599526..599626TCONS_00050918-exon-scaffold_19-1491911889:599526..599626Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1491911889:598913..598999TCONS_00050918-exon-scaffold_19-1491911889:598913..598999Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1491911889:598107..598207TCONS_00050918-exon-scaffold_19-1491911889:598107..598207Clytia hemisphaericaexon
TCONS_00050918-exon-scaffold_19-1491911889:596396..596754TCONS_00050918-exon-scaffold_19-1491911889:596396..596754Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:596396..604396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.168307	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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