TCONS_00050917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050917
Unique NameTCONS_00050917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050917 ID=TCONS_00050917|Name=TCONS_00050917|organism=Clytia hemisphaerica|type=transcript|length=1751bp
CAGCTTAGTTCAACGTGTTTTCTCAGTAGTCACTCTGTCGTCTTTTCCCA
CAAATCTCATCACCAAGAAGAAGAATATAGTAAGTATAAACCTTTCAAAG
TTGCTTTTCCAGTTCCACATAGAGTCATTTTTCTAGTGGATCTGTTTGAA
GCACCTTTTTTGCCCCTTCACCTAAAAAGTGTTTGAggcatcttttcttt
tttttttgccactttttttcaaattcattcaTTGCACTGAATCTGATTGT
GGCTTTTTTCCCCGCCCGTCAGGATTCACGTCGTTCAGCCTCTGAATCTG
ATTGCGGCAACCCGTGGCCAGGGCAGGTGTGGATCCTGTGCCTGCGACCG
ACCGAGCTTGTGCGTATCGACAGCTCATAAAGAATTCAACTGCCTTGTCA
GTTATTAAAGTTACAAAAAACTCTTAAAAGTATAATATTTTTGCAAACAA
TTATAGTTTGACTAGATTATTTTATACTATATACAGTTAGAGCAGTTTTT
CTATCTGTGCGCAAAGATGATATCTATTGCGTTATATCGTGCACGCATAG
GAAGCTTTGCTTTTACATCTCAGAAAAATGTGAAATGTATCGCTAAATCT
ATTATTGTTGGCTCCAACATTTCCAATAATTCCCTTTTAAAACTATTGAG
ACCTGTTCGTTTTATAGCACTTTTTACCCTGTTATGTTTTGCTATCCTAA
AGTCCTTTGAGTTAACAGAGCTTTACACACCTTTAGATTTTCTTAATCTT
TCAAGAAATggaatttttgttcaatattccAACGTAGTATACAAATCGGG
AGATCCAAaccttatttttctaaaagtgAATTACACGCTTCTATTATCAG
GCGATGTAGAACTTAACCCAGGCCCAAGTGTTCAAGGTTCTTTTCATCAG
GGTCACCGTAGATTTGGTAAGACTGCAGGTATACAATGTTCCTcgaattg
tttttttgctatttgctATGCTCAATTTAGAAAATTGTCGCTATGGAAGA
CTCATGATTTGGATTATGTTTTAGATCAAGGTGatctgaatttcaaaaaa
ttgggtATTACAGGACAGTCCCCATATATTGAAGAGTTTTCTAAGGTAAT
TGAAATAGGAAACAGCACTTGTGCacttaatttcaatatttttgaaggCT
ATTTTGAGACCGGTAACATTTCAGTAAATTTTGTTCAGGAGGAACTCTTG
TTGCAACATTCTGGTGCAGTTTTAGTGATAGCTGGAAATTGCTTAGCTGT
TATGCATTACAACAAAAAGTACTTTGTTTTTGATCCTCATAGCAGAAACT
CTGAAGGCCATCAAGTTGAAGGTAGTATTGGAACttctgttcttttaaaa
tttgacagtTTGCAAGAAATTAAACAGTATATAAGATCTGAGTATAAGAA
CACAAATCTTTTTAACATCATTTATCTCAAAACTGAATTCAATGATcagg
aaaatataaaaaatacaatttcaggGCAAGCCTTGCGAAGACGTAAAAAT
TCTTCACATAAAAGATCAGTTGAGAAGATCAAAGGTACCGAACAATATAA
AGGTTTATTGCAAAAACAAAACGCTGCTAAGAAAAGGTTACGTGAAAAAG
TTCAAGGTACTGATAAGTATGAACAGGAAAAGAAGAACAAGCGTTCGTGT
CGTTCATtaaataaaggatcagaaaaacatgagcaagaaaaagaattaaa
acGTAAACGTCGGGAATTGAATAAAGGAACAGAAAAGTATGAGcatgaaa
a
Run BLAST on NCBI

protein sequence of TCONS_00050917-protein

>TCONS_00050917-protein ID=TCONS_00050917-protein|Name=TCONS_00050917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
MISIALYRARIGSFAFTSQKNVKCIAKSIIVGSNISNNSLLKLLRPVRFI
ALFTLLCFAILKSFELTELYTPLDFLNLSRNGIFVQYSNVVYKSGDPNLI
FLKVNYTLLLSGDVELNPGPSVQGSFHQGHRRFGKTAGIQCSSNCFFAIC
YAQFRKLSLWKTHDLDYVLDQGDLNFKKLGITGQSPYIEEFSKVIEIGNS
TCALNFNIFEGYFETGNISVNFVQEELLLQHSGAVLVIAGNCLAVMHYNK
KYFVFDPHSRNSEGHQVEGSIGTSVLLKFDSLQEIKQYIRSEYKNTNLFN
IIYLKTEFNDQENIKNTISGQALRRRKNSSHKRSVEKIKGTEQYKGLLQK
QNAAKKRLREKVQGTDKYEQEKKNKRSCRSLNKGSEKHEQEKELKRKRRE
LNKGTEKYEHE
Run BLAST on NCBI

transcript from alignment at scaffold_19:454267..456144-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050917 ID=TCONS_00050917|Name=TCONS_00050917|organism=Clytia hemisphaerica|type=transcript|length=1878bp|location=Sequence derived from alignment at scaffold_19:454267..456144- (Clytia hemisphaerica)
CAGCTTAGTTCAACGTGTTTTCTCAGTAGTCACTCTGTCGTCTTTTCCCA
CAAATCTCATCACCAAGAAGAAGAATATAGTAAGTATAAACCTTTCAAAG
TTGCTTTTCCAGTTCCACATAGAGTCATTTTTCTAGTGGATCTGTTTGAA
GCACCTTTTTTGCCCCTTCACCTAAAAAGTGTTTGAGGCATCTTTTCTTT
TTTTTTTGCCACTTTTTTTCAAATTCATTCATTGCACTGAATCTGATTGT
GGCTTTTTTCCCCGCCCGTCAGGATTCACGTCGTTCAGCCTCTGAATCTG
ATTGCGGCAACCCGTGGCCAGGGCAGGTGTGGATCCTGTGCCTGCGACCG
ACCGAGCTTGTGCGTATCGACAGCTCATAAAGAATTCAACTGCCTTGTCA
GTTATTAAAGTTACAAAAAACTCTTAAAAGTATAATATTTTTGCAAACAA
TTATAGTTTGACTAGATTATTTTATACTATATACAGTTAGAGCAGTTTTT
CTATCTGTGCGCAAAGATGATATCTATTGCGTTATATCGTGCACGCATAG
GAAGCTTTGCTTTTACATCTCAGAAAAATGTGAAATGTATCGCTAAATCT
ATTATTGTTGGCTCCAACATTTCCAATAATTCCCTTTTAAAACTATTGAG
ACCTGTTCGTTTTATAGCACTTTTTACCCTGTTATGTTTTGCTATCCTAA
AGTCCTTTGAGTTAACAGAGCTTTACACACCTTTAGATTTTCTTAATCTT
TCAAGAAATGGAATTTTTGTTCAATATTCCAACGTAGTATACAAATCGGG
AGATCCAAACCTTATTTTTCTAAAAGTGAATTACACGCTTCTATTATCAG
GCGATGTAGAACTTAACCCAGGCCCAAGTGTTCAAGGTTCTTTTCATCAG
GGTCACCGTAGATTTGGTAAGACTGCAGGTATACAATGTNACTTTTTTCA
AAGTTAATTACACACTCTTATTATCAGGCGATGTAGAACTTAACCCAGGC
CCAACTGTTCAAGGTTCATTTCACCAGGGCAACAGTAAATTTGGCAAGAC
GGCAGGTATACAATGTTCCTCGAATTGTTTTTTTGCTATTTGCTATGCTC
AATTTAGAAAATTGTCGCTATGGAAGACTCATGATTTGGATTATGTTTTA
GATCAAGGTGATCTGAATTTCAAAAAATTGGGTATTACAGGACAGTCCCC
ATATATTGAAGAGTTTTCTAAGGTAATTGAAATAGGAAACAGCACTTGTG
CACTTAATTTCAATATTTTTGAAGGCTATTTTGAGACCGGTAACATTTCA
GTAAATTTTGTTCAGGAGGAACTCTTGTTGCAACATTCTGGTGCAGTTTT
AGTGATAGCTGGAAATTGCTTAGCTGTTATGCATTACAACAAAAAGTACT
TTGTTTTTGATCCTCATAGCAGAAACTCTGAAGGCCATCAAGTTGAAGGT
AGTATTGGAACTTCTGTTCTTTTAAAATTTGACAGTTTGCAAGAAATTAA
ACAGTATATAAGATCTGAGTATAAGAACACAAATCTTTTTAACATCATTT
ATCTCAAAACTGAATTCAATGATCAGGAAAATATAAAAAATACAATTTCA
GGGCAAGCCTTGCGAAGACGTAAAAATTCTTCACATAAAAGATCAGTTGA
GAAGATCAAAGGTACCGAACAATATAAAGGTTTATTGCAAAAACAAAACG
CTGCTAAGAAAAGGTTACGTGAAAAAGTTCAAGGTACTGATAAGTATGAA
CAGGAAAAGAAGAACAAGCGTTCGTGTCGTTCATTAAATAAAGGATCAGA
AAAACATGAGCAAGAAAAAGAATTAAAACGTAAACGTCGGGAATTGAATA
AAGGAACAGAAAAGTATGAGCATGAAAA

Coding sequence (CDS) from alignment at scaffold_19:454267..456144-

>TCONS_00050917 ID=TCONS_00050917|Name=TCONS_00050917|organism=Clytia hemisphaerica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_19:454267..456144- (Clytia hemisphaerica)
GTATACAATGTTCCTCGAATTGTTTTTTTGCTATTTGCTATGCTCAATTT
AGAAAATTGTCGCTATGGAAGACTCATGATTTGGATTATGTTTTAGATCA
AGGTGATCTGAATTTCAAAAAATTGGGTATTACAGGACAGTCCCCATATA
TTGAAGAGTTTTCTAAGGTAATTGAAATAGGAAACAGCACTTGTGCACTT
AATTTCAATATTTTTGAAGGCTATTTTGAGACCGGTAACATTTCAGTAAA
TTTTGTTCAGGAGGAACTCTTGTTGCAACATTCTGGTGCAGTTTTAGTGA
TAGCTGGAAATTGCTTAGCTGTTATGCATTACAACAAAAAGTACTTTGTT
TTTGATCCTCATAGCAGAAACTCTGAAGGCCATCAAGTTGAAGGTAGTAT
TGGAACTTCTGTTCTTTTAAAATTTGACAGTTTGCAAGAAATTAAACAGT
ATATAAGATCTGAGTATAAGAACACAAATCTTTTTAACATCATTTATCTC
AAAACTGAATTCAATGATCAGGAAAATATAAAAAATACAATTTCAGGGCA
AGCCTTGCGAAGACGTAAAAATTCTTCACATAAAAGATCAGTTGAGAAGA
TCAAAGGTACCGAACAATATAAAGGTTTATTGCAAAAACAAAACGCTGCT
AAGAAAAGGTTACGTGAAAAAGTTCAAGGTACTGATAAGTATGAACAGGA
AAAGAAGAACAAGCGTTCGTGTCGTTCATTAAATAAAGGATCAGAAAAAC
ATGAGCAAGAAAAAGAATTAAAACGTAAACGTCGGGAATTGAATAAAGGA
ACAGAAAAGTATGAGCATGAAATGATATCTATTGCGTTATATCGTGCACG
CATAGGAAGCTTTGCTTTTACATCTCAGAAAAATGTGAAATGTATCGCTA
AATCTATTATTGTTGGCTCCAACATTTCCAATAATTCCCTTTTAAAACTA
TTGAGACCTGTTCGTTTTATAGCACTTTTTACCCTGTTATGTTTTGCTAT
CCTAAAGTCCTTTGAGTTAACAGAGCTTTACACACCTTTAGATTTTCTTA
ATCTTTCAAGAAATGGAATTTTTGTTCAATATTCCAACGTAGTATACAAA
TCGGGAGATCCAAACCTTATTTTTCTAAAAGTGAATTACACGCTTCTATT
ATCAGGCGATGTAGAACTTAACCCAGGCCCAAGTGTTCAAGGTTCTTTTC
ATCAGGGTCACCGTAGATTTGGTAAGACTGCAGGTATACAATGTTCCTCG
AATTGTTTTTTTGCTATTTGCTATGCTCAATTTAGAAAATTGTCGCTATG
GAAGACTCATGATTTGGATTATGTTTTAGATCAAGGTGATCTGAATTTCA
AAAAATTGGGTATTACAGGACAGTCCCCATATATTGAAGAGTTTTCTAAG
GTAATTGAAATAGGAAACAGCACTTGTGCACTTAATTTCAATATTTTTGA
AGGCTATTTTGAGACCGGTAACATTTCAGTAAATTTTGTTCAGGAGGAAC
TCTTGTTGCAACATTCTGGTGCAGTTTTAGTGATAGCTGGAAATTGCTTA
GCTGTTATGCATTACAACAAAAAGTACTTTGTTTTTGATCCTCATAGCAG
AAACTCTGAAGGCCATCAAGTTGAAGGTAGTATTGGAACTTCTGTTCTTT
TAAAATTTGACAGTTTGCAAGAAATTAAACAGTATATAAGATCTGAGTAT
AAGAACACAAATCTTTTTAACATCATTTATCTCAAAACTGAATTCAATGA
TCAGGAAAATATAAAAAATACAATTTCAGGGCAAGCCTTGCGAAGACGTA
AAAATTCTTCACATAAAAGATCAGTTGAGAAGATCAAAGGTACCGAACAA
TATAAAGGTTTATTGCAAAAACAAAACGCTGCTAAGAAAAGGTTACGTGA
AAAAGTTCAAGGTACTGATAAGTATGAACAGGAAAAGAAGAACAAGCGTT
CGTGTCGTTCATTAAATAAAGGATCAGAAAAACATGAGCAAGAAAAAGAA
TTAAAACGTAAACGTCGGGAATTGAATAAAGGAACAGAAAAGTATGAGCA
TGAAATGATATCTATTGCGTTATATCGTGCACGCATAGGAAGCTTTGCTT
TTACATCTCAGAAAAATGTGAAATGTATCGCTAAATCTATTATTGTTGGC
TCCAACATTTCCAATAATTCCCTTTTAAAACTATTGAGACCTGTTCGTTT
TATAGCACTTTTTACCCTGTTATGTTTTGCTATCCTAAAGTCCTTTGAGT
TAACAGAGCTTTACACACCTTTAGATTTTCTTAATCTTTCAAGAAATGGA
ATTTTTGTTCAATATTCCAACGTAGTATACAAATCGGGAGATCCAAACCT
TATTTTTCTAAAAGTGAATTACACGCTTCTATTATCAGGCGATGTAGAAC
TTAACCCAGGCCCAAGTGTTCAAGGTTCTTTTCATCAGGGTCACCGTAGA
TTTGGTAAGACTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032267XLOC_032267Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050917-proteinTCONS_00050917-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050917-exon-scaffold_19-1575043694:455217..456144TCONS_00050917-exon-scaffold_19-1575043694:455217..456144Clytia hemisphaericaexon
TCONS_00050917-exon-scaffold_19-1575043694:454267..455089TCONS_00050917-exon-scaffold_19-1575043694:454267..455089Clytia hemisphaericaexon
TCONS_00050917-exon-scaffold_19-1510915933:455217..456144TCONS_00050917-exon-scaffold_19-1510915933:455217..456144Clytia hemisphaericaexon
TCONS_00050917-exon-scaffold_19-1510915933:454267..455089TCONS_00050917-exon-scaffold_19-1510915933:454267..455089Clytia hemisphaericaexon
TCONS_00050917-exon-scaffold_19-1491911889:455217..456144TCONS_00050917-exon-scaffold_19-1491911889:455217..456144Clytia hemisphaericaexon
TCONS_00050917-exon-scaffold_19-1491911889:454267..455089TCONS_00050917-exon-scaffold_19-1491911889:454267..455089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:454267..456144 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40891	1.23548	1.75016	2.41652	0.176222	0.211752	0.174782	0.163447	0.290821	0.192122	0.372562	0.403602	0.12849	0.0317818	0.183025	0.204637	0.0574322	0.113551	0.342406	0.177803	0.527714	1.32406	0.245039	0.296316	0.172916	0.0945015	0.194794	0.281623	0.190978	0.121025
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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