TCONS_00050915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050915
Unique NameTCONS_00050915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050915 ID=TCONS_00050915|Name=TCONS_00050915|organism=Clytia hemisphaerica|type=transcript|length=731bp
ATGTCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACATT
GTTTAAAACATCTCAAATGCTTTTggatatatttatttcaaccaatcaaa
tgatTTGTATACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAGAA
AGACAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTGATGGAATTCAC
TCGAAATCGAAAAGatggacaatttttttcaaatagggAACAATTTTCCT
TGGTAGAGGATGCCTTGAGCTGGACAAACACTCAATCAGTTGGAACCATG
TGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTTATACA
TGATCAAATTAACAAGAGAACACATCGACTAAACATGATGAACGTTTAAA
CTTGCAGCTCAGtgtCTCAGTACAAGAGTCATGCTCTTCAGTATCAAAGG
CAAGCCCAAAACTAGAGGTACACAAAAGTTTGTCAGGATCTGCgacaaaa
tttttgtttgcctAAATGGACAGTATCCTAACCAAGATATGGCAACAAGA
AAACCGGCAAAATCTGCTCTCAGACAGTACACAGAAACAAAAGACAAATG
ttttgagtgGCTGACggatacatttttgaaaagtgagAAAACGGAGGCAC
CTACACCTGGCTTGCAAAGGAGGAAAGGAAAAAGGACCTGGCTATTCAAA
CTGTTGAAAGGTTGCATGCAAACTACAGGTT
Run BLAST on NCBI

protein sequence of TCONS_00050915-protein

>TCONS_00050915-protein ID=TCONS_00050915-protein|Name=TCONS_00050915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MLFSIKGKPKTRGTQKFVRICDKIFVCLNGQYPNQDMATRKPAKSALRQY
TETKDKCFEWLTDTFLKSEKTEAPTPGLQRRKGKRTWLFKLLKGCMQTTG
Run BLAST on NCBI

transcript from alignment at scaffold_19:374346..377610-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050915 ID=TCONS_00050915|Name=TCONS_00050915|organism=Clytia hemisphaerica|type=transcript|length=3265bp|location=Sequence derived from alignment at scaffold_19:374346..377610- (Clytia hemisphaerica)
ATGTCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACATT
GTTTAAAACATCTCAAATGCTTTTGGATATATTTATTTCAACCAATCAAA
TGATTTGTATACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAGAA
AGACAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTGATGGAATTCAC
TCGAAATCGAAAAGATGGACAATTTTTTTCAAATAGGGAACAATTTTCCT
TGGTAGAGGATGCCTTGAGGTATGTATATCTGAAGTTTCTAGTGTGGTCT
GGCTCTTTTCACTGTGGTCTGGCTCTTTGAGTTCAGGCCATTTTTAAATT
TCATGTATTCAACCATCGACTAGGTAGTTCTTCCAGTTCTTGTGTTCTTT
CACTTTGTTTACGTAATCAGCTAAAAGTTGGCGGTTAATTTCGAAAAGTT
TGCTTCTTGGTAATACTGAAGGAAGAGATGGAAGAATAATTTGAATTTCG
TCGCAAACAAACAGCTGCCTTTAATAGTAAAGTAGTCTAGATTATTATGC
GGCCAGTGCGTGATATGATAAGCCGATTCATCATAAAAAGTAAGACTGTA
GAAAACTTAAAGAGACAGCTTCTTTTAAAGATGCTTTCAATGCTTTGGGA
GTTGATATTACTGATGATGCTGTTGATGTTCATCCTGAGAAAATCTGTGA
AAAGTGTAGAGTTGTTTGTACGAGTTTGAATCAGCATTGAAAGGCACCCA
GAGGCACCCAAGCTGAAAGTAGGAAAATAGAAAAAGCTAGGCATAAATCA
ACACAGTATGTATAAAATAACAACAGCATCAGATATTGATACCAGTGGAT
TCGCAGATTGTGTTGATGGGGAGAAAATTTCAGAAATTAAAGATAAGAAG
AGACCGTGGCTTTGTCTAATTATTGATGCTGAAGACTTTATATTTGTTAT
TGATTGTTTTTTTTTTGAATTGGGTGAAATAAATGAGGAAATCAATTANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGAGGAAATACCTT
AAATGATATCAATGATGATTTGTTTGAAATATTTATCACTACCAGGTGTT
GAAATTCAAAAAAAATGATTGAAATTATATGGTCTAATAGACCTTTTCAT
AAATTACGTCACGAACATCACTTGCCTCGTTTTGAAGTTATTGCCATGGT
GATTAACTCCCAGCGGATTTTATTAAAACTACTTTCTATTCATAAAAAAT
CATTTAATGTCTCAAGGGATAAAATCACTGTGGAAACTGTTTGAATACGA
GGCAAGTGATGTTCGTGACGTAATTTATGAAAAGGTCAATTCCTTTCCTT
TTAGCTGGACAAACACTCAATCAGTTGGAACCATGTGGTACAACTCTGGG
AGTTCAAGAATACTAAAATCCCAGGGCTTTATACATGATCAAATTAACAA
GAGAACACATCGACTAAACATGATGAACGTTTAAACTTGCAGCTCAGGTA
ACTTAGATGATTACCATATTAACTCAAAAAAAGTGCCTATATGTTATCTA
ATCAGGCTAGGTAAATTTGAGAATTAGGTTTGTCTGAAATAAAATGGCCT
TTTTATGACAATAAAAATCCCATGATATGTACNTCTGAGAATTAGGTTTG
TCTGAAATAAAATGGCCTTTTTATGACAATAAAAATCCCACGATATGTAT
TCAGGTATTCAGTTGTTGTCAATGACATTGAAATGACTATAGCTACAAGT
CTGGTCTCGATAATTTTAGTTTGATGACTAGCTTGATATAAGTACAGAAA
TTTTGAATAATTTTTCTGGGCTCAACATCAAAACTTCTTGAGTGGCTTTT
TCAGCAGTGAAACACAAATATTGAAGGTTTGAATGGTGACAAAGACTCTA
GCTTAATTTCATTATTTGTCCTGGATTCCTTTTGAAAGTTACTTCATTTT
TATTTTAGTGTCTCAGTACAAGAGTCATGCTCTTCAGTATCAAAGGCAAG
CCCAAAACTAGAGGTACACAAAAGTTTGTCAGGATCTGCGACAAAATTTT
TGTTTGCCTAAATGGACAGTATCCTAACCAAGATATGGCAACAAGAAAAC
CGGCAAAATCTGCTCTCAGACAGTACACAGAAACAAAAGACAAATGTTTT
GAGGTAATTTTTATCCTATATTTTTCAACGGGATTAGTTTTTGTAGGTAT
TCTCACTAGCTGCTAGTTCCCTTCAAGGGTTAGGTGTTACTATATCCAGA
TAATTCTACTCCATACAATATGTGAATTGAAATAAAATACATCTCATGAT
TTTAAAGAGGCATTTCTTTTTATTAGAGATAATGTTGACATGAAGGTTCA
CTTGTGTGTTGTGACCAAATTATAACTTTTTATTATTTTAGTGGCTGACG
GATACATTTTTGAAAAGTGAGAAAACGGAGGCACCTACACCTGGCTTGCA
AAGGAGGAAAGGAAAAAGGACCTGGCTATTCAAACTGTTGAAAGGTTGCA
TGCAAACTACAGGTT

Coding sequence (CDS) from alignment at scaffold_19:374346..377610-

>TCONS_00050915 ID=TCONS_00050915|Name=TCONS_00050915|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_19:374346..377610- (Clytia hemisphaerica)
TGGCTGACGGATACATTTTTGAAAAGTGAGAAAACGGAGGCACCTACACC
TGGCTTGCAAAGGAGGAAAGGAAAAAGGACCTGGCTATTCAAACTGTTGA
AAGGTTGCATGCAAACTACAGGTATGCTCTTCAGTATCAAAGGCAAGCCC
AAAACTAGAGGTACACAAAAGTTTGTCAGGATCTGCGACAAAATTTTTGT
TTGCCTAAATGGACAGTATCCTAACCAAGATATGGCAACAAGAAAACCGG
CAAAATCTGCTCTCAGACAGTACACAGAAACAAAAGACAAATGTTTTGAG
TGGCTGACGGATACATTTTTGAAAAGTGAGAAAACGGAGGCACCTACACC
TGGCTTGCAAAGGAGGAAAGGAAAAAGGACCTGGCTATTCAAACTGTTGA
AAGGTTGCATGCAAACTACAGGTATGCTCTTCAGTATCAAAGGCAAGCCC
AAAACTAGAGGTACACAAAAGTTTGTCAGGATCTGCGACAAAATTTTTGT
TTGCCTAAATGGACAGTATCCTAACCAAGATATGGCAACAAGAAAACCGG
CAAAATCTGCTCTCAGACAGTACACAGAAACAAAAGACAAATGTTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032266XLOC_032266Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050915-proteinTCONS_00050915-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050915-exon-scaffold_19-1575043694:377342..377610TCONS_00050915-exon-scaffold_19-1575043694:377342..377610Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1575043694:375364..375506TCONS_00050915-exon-scaffold_19-1575043694:375364..375506Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1575043694:374708..374902TCONS_00050915-exon-scaffold_19-1575043694:374708..374902Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1575043694:374346..374469TCONS_00050915-exon-scaffold_19-1575043694:374346..374469Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1510915933:377342..377610TCONS_00050915-exon-scaffold_19-1510915933:377342..377610Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1510915933:375364..375506TCONS_00050915-exon-scaffold_19-1510915933:375364..375506Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1510915933:374708..374902TCONS_00050915-exon-scaffold_19-1510915933:374708..374902Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1510915933:374346..374469TCONS_00050915-exon-scaffold_19-1510915933:374346..374469Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1491911889:377342..377610TCONS_00050915-exon-scaffold_19-1491911889:377342..377610Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1491911889:375364..375506TCONS_00050915-exon-scaffold_19-1491911889:375364..375506Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1491911889:374708..374902TCONS_00050915-exon-scaffold_19-1491911889:374708..374902Clytia hemisphaericaexon
TCONS_00050915-exon-scaffold_19-1491911889:374346..374469TCONS_00050915-exon-scaffold_19-1491911889:374346..374469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:374346..377610 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.545811	0.169518	0	0	10.6958	11.5639	6.13414	11.8252	4.57235	5.99065	6.60195	5.69218	3.92191	3.38143	1.25826	1.75048	0.546318	0.929546	2.64032	2.59902	0.795261	0.672628	0.727832	0.866659	0.292245	1.3705	1.05066	1.07272	1.85385	1.21897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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