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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050913 ID=TCONS_00050913|Name=TCONS_00050913|organism=Clytia hemisphaerica|type=transcript|length=2527bpRun BLAST on NCBI protein sequence of TCONS_00050913-protein >TCONS_00050913-protein ID=TCONS_00050913-protein|Name=TCONS_00050913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp MATEEDLFTLDLQNLNLKVIPEDVFKNANLKHIKLTPGNNIEVSEKYKLMRun BLAST on NCBI transcript from alignment at scaffold_19:246112..268513- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050913 ID=TCONS_00050913|Name=TCONS_00050913|organism=Clytia hemisphaerica|type=transcript|length=22402bp|location=Sequence derived from alignment at scaffold_19:246112..268513- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_19:246112..268513- >TCONS_00050913 ID=TCONS_00050913|Name=TCONS_00050913|organism=Clytia hemisphaerica|type=CDS|length=27264bp|location=Sequence derived from alignment at scaffold_19:246112..268513- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050913 vs. Swiss-Prot (Human)
Match: LRWD1 (Leucine-rich repeat and WD repeat-containing protein 1 OS=Homo sapiens GN=LRWD1 PE=1 SV=2) HSP 1 Score: 192.2 bits (487), Expect = 9.721e-52 Identity = 157/614 (25.57%), Postives = 273/614 (44.46%), Query Frame = 2
Query: 161 LDLQNLNLKVIPED-------VFKNAN--------------LKHIKLTPGNNIEVSEKYKLMDILKNLETVDDRDITVQRNAIKNLNAIFQRRLQ---EMFLTKQASEIYCEPAEEKVRIQK-MITLAQSTILAGPSALSNYRNYKLERLIEENYELFVSDAXXXXXXXXXXXXXXXXXRIGRQQQTLQSLKR-----------KRF---------SSPLVNKKPRRSATTHSVHHLLQTHSKNNDPEDFQTKVWMCAFQPDINDPTKTTNLVATCGGDSICFIDCDSGIVLKKYKQTNEEFYCLCWTILKYKDELKGEESTLAALAVAGISGDIKLIDPDNLICFERVSYHRKPVDALMFHPIIQHWLFSGSEDRTVVLWDLGYPFSSDVRKAEKKLVL-KGSLQSTLRNLTFAPHGKVILGATDDGLHVWNVDFVGVSNKDHVRSAMYTYRLPSKIS-QAIDSLNILNNNLFAMKRLGEGVIQIIYSKSEFLQNDLQ------LVTSLSWRKTSTAFLKFNFTKGCSTLLAGDDEGTIWMYNLKELMLKSHDDMDNDAKALVENL---QPIKAEKLRCENKYGRLFNHVCSSSNLDHVVGVTDANVVAIWNR 1834
LDL N +L+ +P++ V + AN L+ + L + V++ K+ +L L V+ +D + + ++NLN R+ E F+ P EE + Q + A + GP +LS + +++ + EE V+ + + S ++ + + L +LKR KR SP+ + A H LQ HSKNN P+D +T++W CAF+P + T+ VATCGG+++C IDC +GIVL KYK EEF+ + WT L + G + + LA AG+ G ++L+ C + H+K + L F P + LF+ S D+ ++LWD+G P +A + L L S+ L + P +++ G + G W+V K V + + S+ S + +D L +N ++ A K G G I + + + Q ++ L W T A+ + +L GD+EG +W+Y++ + LK + +A + L QP ++ + + N V ++++ ++ +TD+N+VAIW R
Sbjct: 52 LDLSNNHLETLPDNLGLSHLRVLRCANNQLGDVTALCQFPKLEELSLEGNPFLTVNDNLKVSFLLPTLRKVNGKDASSTYSQVENLNRELTSRVTAHWEKFMATLG------PEEEAEKAQADFVKSAVRDVRYGPESLSEFTQWRVRMISEE----LVAASRTQVQKANSPEKPPEAGAAHKPRARLAALKRPDDVPLSLSPSKRACASPSAQVEGSPVAGSDGSQPAVKLEPLHFLQCHSKNNSPQDLETQLWACAFEPAWEE-GATSQTVATCGGEAVCVIDCQTGIVLHKYKAPGEEFFSVAWTALMVVTQ-AGHKKRWSVLAAAGLRGLVRLLHVRAGFCCGVIRAHKKAIATLCFSPAHETHLFTASYDKRIILWDIGVPNQDYEFQASQLLTLDTTSIPLRLCPVASCPDARLLAGC-EGGCCCWDVRL-DQPQKRRVCEVEFVFSEGSEASGRRVDGLAFVNEDIVASKGSGLGTICLWSWRQTWGGRGSQSTVAVVVLARLQWSSTELAYFSLSACPDKGIVLCGDEEGNVWLYDVSNI-LKQPPLLPAALQAPTQILKWPQPWALGQVVTKT----MVNTVVANASFTYLTALTDSNIVAIWGR 646 The following BLAST results are available for this feature:
BLAST of TCONS_00050913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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