|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050902 ID=TCONS_00050902|Name=TCONS_00050902|organism=Clytia hemisphaerica|type=transcript|length=2301bp tttttgtacttttttacACCTACTGGTGTTATACTTTAATGATTGAATgc caaaaactttaaaatgtgAGACATAAAATTTCACCTATATTTCACCTATT CCCAGATATACTTCCCTTGTGTAAGCCACATTTTTGCCCACTTAACAAAC TGTAAGCCACAAATCAGTGCAGCTAATGAAAAATTTAGCCCTTTGCTGGC AATGCTGAAAAGAAAGTATATTTCTGACTGTTTCCATTATTGAGAACTCA GCCTTCAAAGTTTCTTGGTAGGGTAAACCACATGACCAGTAAGCCACATT TTTTGCCCACACTTCATTTGCTTGTAAATCCTCTTTAAGTAAGCCACAAA AATTCGCCCTTTATGCAATGATAGCTAATTTCCTCAGCTTAACTATAATT GTAAGACACATAATTTTCCCAAAGTATGGTCAATTTAGTggctgacagta aaaatgtcacaaaacgggtttattttttatttggatCCGATTTTCGACTG tgttgaaaattggaaaattggatttCACAATTTCACCCTATCTGGGTGCT CAAAATTAGCCGTAAAATTTGAGGTTAGCCTCTCAGAGGGTGTATACTTA CTTAGATTAAAATCCTGCCGTGCCGTTGTGACTCAATGACTATGAAATCA CCTAGCAATGACTAAAGCATACTACTGTCAACTCTGTCTTCTTCATTAAA CTCTGGAAACAATAATCAAATCTAAACATTATTTAGActgaatgaagaaa aattaattataaaaTTAGGGGAAATATAATATGGCAGCAGATCAAGCATC GCTTCTTCTAAAGAGACAGTTACAAGaaTTAACAAAGAAACCGGTTGAAG GGTTTTCAGCTGGATTGGTTGATGatgaaaatcttttcaaatggGAGGTA ATGGTCATGGGACCAACTGATTCCTTTTACGAGGGAGGATTTTTCAAAGC ACACTTAATGTTTCCACAAGATTACCCGCAGAAGCCGCCGAAGATGAAAT TCATCAGTGAATTTTGGCATCCCAACGTATCAAAAGATGGTGAGGTCTGT ATATCTATACTTCACGAGCCAGGAGAAGATAAATTTGGATATGAGCGAGC AGAGGAAAGATGGTTGCCAATACATACAGTAGAAACAATTTTATTATCTG TCATCTCAATGATCAATGAACCAAATGATGAATCACCTGCCAATGTAGAT GCTGCTAAAGAATGGAGAGACGAATACGATACCACGTTTAAGAAGAATGT CCGAAAATGTGTCCGGAAAAGTCAAGAATTTTTATGATACtagttgtttt tctttttcgaaatcaTTATAAATAAACCAACAAAAAATCTATGTAAAAAT CTTTTCTCTCAACTGTATATTATATAAACTtccaaaaatatctttcaatt taacacaaaaatatttagctTTTTTTATTGATGCTATTTCTGAGTTGACA GTTTTTAtgtgattttgtaattttaaattGAGTTTTGTCGTTAGACTCTC TTTAATATTATGTCAggtttttgatatttcaatattttgctatTCCTAAT CAAATCTTGTCACTCTGTCAGAGTTTGGTTATATTTTTGGCAAGATAAAA TCTCATTGCTTTCACTTGCTTCTGATGACAAGCTTTGGCAAAACAGGGGA GCAAAATAGTATGTCAATTTCAGATTagtatttgaagaaaaaaatcaaga atttaagAGCTGTTAtttattttgctcaaaatgCTTATTATATAATATTA GAAAAAAGTGCAAGTGCTgcgatttttttatattttttgttaaacGATGA ATATTCTATAGGAGTTttatttttcgcttttttgtGGCACTTATGGTAGA AACAATCTCATTAGGGAGGGAGTGTGTCGGCGCTAAATATTtggtatttg aaaaaaagaatagaaaatCGATCGGATTCcagatttgattgatttttttt gctaattttataCCATCGAAAGACTATTATTTATGTCATAGAATTAGTTA TGCGGAAAAATCTTTGGTTGAATTTGTCcattaatttttagaaattttag gcGTATTTGTAAAGGGAGTGTTTTTTTCAGTAGTTTTCTTTATAGACAGG ATGTTATCGCAATGTTAAACAGAAGGTTCCTATACAGGCGTTTTATTATG AGAAAACCAACTTAAAAATACATTATAATTTGCAATAAAAATACTTAAAC CCGATATTTTACTTTGTTCCTTTGTTTTACTCCTTTTTCACCTTCTGAGA ATTTCGAACAATATTTGTCTAGTTTTGAGgataattttcttgtttttgaa a Run BLAST on NCBI transcript from alignment at scaffold_19:61474..67833- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050902 ID=TCONS_00050902|Name=TCONS_00050902|organism=Clytia hemisphaerica|type=transcript|length=6360bp|location=Sequence derived from alignment at scaffold_19:61474..67833- (Clytia hemisphaerica) TTTTTGTACTTTTTTACACCTACTGGTGTTATACTTTAATGATTGAATGC
CAAAAACTTTAAAATGTGAGACATAAAATTTCACCTATATTTCACCTATT
CCCAGATATACTTCCCTTGTGTAAGCCACATTTTTGCCCACTTAACAAAC
TGTAAGCCACAAATCAGTGCAGCTAATGAAAAATTTAGCCCTTTGCTGGC
AATGCTGAAAAGAAAGTATATTTCTGACTGTTTCCATTATTGAGAACTCA
GCCTTCAAAGTTTCTTGGTAGGGTAAACCACATGACCAGTAAGCCACATT
TTTTGCCCACACTTCATTTGCTTGTAAATCCTCTTTAAGTAAGCCACAAA
AATTCGCCCTTTATGCAATGATAGCTAATTTCCTCAGCTTAACTATAATT
GTAAGACACATAATTTTCCCAAAGTATGGTCAATTTAGTGGCTGACAGTA
AAAATGTCACAAAACGGGTTTATTTTTTATTTGGATCCGATTTTCGACTG
TGTTGAAAATTGGAAAATTGGATTTCACAATTTCACCCTATCTGGGTGCT
CAAAATTAGCCGTAAAATTTGAGGTTAGCCTCTCAGAGGGTGTATACTTA
CTTAGATTAAAATCCTGCCGTGCCGTTGTGACTCAATGACTATGAAATCA
CCTAGCAATGACTAAAGCATACTACTGTCAACTCTGTCTTCTTCATTAAA
CTCTGGAAACAATAATCAAATCTAAACATTATTTAGACTGAATGAAGAAA
AATTAATTATAAAATTAGGGGAAATATAATATGGCAGCAGATCAAGCATC
GCTTCTTCTAAAGAGACAGTTACAAGGTAATGTTATTGTTTGGCTTCTTC
TATCAAAAGGGCTCTAGCCTCTTGGATCCTTCTTATACTAGAAATATCTT
ACAAGTTTATCTTGGTAAACTGTTTTTCCTAGATTTTAGAACATATCAAA
CCATAAAGTAGTGATAAGTTTAGGGAGACAAATACTGCAATAAAGTTTTT
CTAGAAATCAGAACACATAATTTGTATAAAAAATGGAGAGGTCATAACAT
TGGGTCTCCTAGAAGATAAGAACACATATTTCTAAAATATCTCTCCGCCG
ACTGCTTCTGTACATGCGAACTTGCAGGCACAATGCACTTTTCTTGAAAT
TAAAATTTTATTTAGACTATAAACAAAATACCGAAAATATGAAATCATTT
TAGTTTGAGTCCCTTATTAAGGGAACTTATTTTGGCGGGAACTAATTTTG
CCGGGCAGCAAAAATCCTAAAAGAAACTTTTTTTGGCGGGAACTGATTTT
GACAAATGACAGTGTAAATTTGTTCTATTTTGCCTTATTTTGAGCAACTT
TGATGAATTGCAGGGTTCATTTAGGCAAAAAAAAACAAAAAAAATTTTGG
GAACTTATTTTTTGCGAGTGAGCGAAATATATTTAATTTTGGTGGGAACT
AATTTTGGCGAATTTCGTCTAAATTGGCCAAATCCGCCAAAATAAGTTTT
CAGTCAATTCTATTTGCTTTGTTTCACCATTGATTTTTTTTTTCAATTTA
GAATTAACAAAGAAACCGGTTGAAGGGTTTTCAGCTGGATTGGTTGATGA
TGAAAATCTTTTCAAATGGGAGGTAATGGTCATGGGACCAACTGATTCCT
TTTAGTAAGTGTGCATGAAGAAAAAGGACGATTCTAATGCTCTAAGACCA
GTAAATCTATAAATCGACCAGCCTTAAGCTTAGCTGTTCCTAATTTTTTT
TTCGTGTTTAGAACCGGCATTTCTTATATAGCCATATCTGTAATTTGTTG
ATAAGTTTGTTCTCAATATGCTCTTAGGTTTTTAGCAANAAGACACATAA
TTTTCCCAAAGTATGGTCAATTTAGTGGCTGACAGTAAAAATGTCACAAA
ACGGGTTTATTTTTTATTTGGATCCGATTTTCGACTGTGTTGAAAATTGG
AAAATTGGATTTCACAATTTCACCCTATCTGGGTGCTCAAAATTAGCCGT
AAAATTTGAGGTTAGCCTCTCAGAGGGTGTATACTTACTTAGATTAAAAT
CCTGCCGTGCCGTTGTGACTCAATGACTATGAAATCACCTAGCAATGACT
AAAGCATACTACTGTCAACTCTGTCTTCTTCATTAAACTCTGGAAACAAT
AATCAAATCTAAACATTATTTAGACTGAATGAAGAAAAATTAATTATAAA
ATTAGGGGAAATATAATATGGCAGCAGATCAAGCATCGCTTCTTCTAAAG
AGACAGTTACAAGGTAATGTTATTGTTTGGCTTCTTCTATCAAAAGGGCT
CTAGCCTCTTGGATCCTTCTTATACTAGAAATATCTTACAAGTTTATCTT
GGTAAACTGTTTTTCCTAGATTTTAGAACATATCAAACCATAAAGTAGTG
ATAAGTTTAGGGAGACAAATACTGCAATAAAGTTTTTCTAGAAATCAGAA
CACATAATTTGTATAAAAAATGGAGAGGTCATAACATTGGGTCTCCTAGA
AGATAAGAACACATATTTCTAAAATATCTCTCCGCCGACTGCTTCTGTAC
ATGCGAACTTGCAGGCACAATGCACTTTTCTTGAAATTAAAATTTCATTT
AGACTAAAAACAAAATACCGAAAATATGAAATCATTTTAGTTTGAGNCGC
CGACTGCTTCTGTACATGCGAACTTGCAGGCACAATGCACTTTTCTTGAA
ATTAAAATTTTATTTAGACTATAAACAAAATACCGAAAATATGAAATCAT
TTTAGTTTGAGTCCCTTATTAAGGGAACTTATTTTGGCGGGAACTAATTT
TGCCGGGCAGCAAAAATCCTAAAAGAAACTTTTTTTGGCGGGAACTGATT
TTGACAAATGACAGTGTAAATTTGTTCTATTTTGCCTTATTTTGAGCAAC
TTTGATGAATTGCAGGGTTCATTTAGGCAAAAAAAAACAAAAAAAATTTT
GGGAACTTATTTTTTGCGAGTGAGCGAAATATATTTAATTTTGGTGGGAA
CTAATTTTGGCGAATTTCGTCTAAATTGGCCAAATCCGCCAAAATAAGTT
TTCAGTCAATTCTATTTGCTTTGTTTCACCATTGATTTTTTTTTTCAATT
TAGAATTAACAAAGAAACCGGTTGAAGGGTTTTCAGCTGGATTGGTTGAT
GATGAAAATCTTTTCAAATGGGAGGTAATGGTCATGGGACCAACTGATTC
CTTTTAGTAAGTGTGCATGAAGAAAAAGGACGATTCTAATGCTCTAAGAC
CAGTAAATCTATAAATCGACCAGCCTTAAGCTTAGCTGTTCCTAATTTTT
TTTTCGTGTTTAGAACCGGCATTTCTTATATAGCCATATCTGTAATTTGT
TGATAAGTTTGTTCTCAATATGCTCTTAGGTTTTTAGCAATAATGGAGCA
AGTGTTCTTTATAATTATCCTATTCATAAAAAGTGTGTATTGATTAGTAC
TCACTATAAGTATAANATAATGGAGCAAGTGTTTTTTATAATTATCCTAT
TCATAAAAAGTGTGTATTGATTAGTACTCACTATAAGTATAATCTTTCTG
AAATTCAGATGGGAAATTCTTGGAGAGTGGAAATAGAAAATCGCTTGGAA
TTAAATTGCTTTCTCTTTATTTATGAATTCTGACTTACTTACTTTCAGCG
AGGGAGGATTTTTCAAAGCACACTTAATGTTTCCACAAGATTACCCGCAG
AAGCCGCCGAAGATGAAATTCATCAGTGAATTTTGGCATCCCAACGGTTT
GTTATAATACATGAATTTTAAAGGACCTAAATGTTTTGTTTGGCGAGTAT
AAACATTTTAGAGAACCTCCACTAAAATGAAAATTTGTATTCATTTGAGA
AGTTTTTTTGAAATACCAAGTAAACAAATTTGCATCTACCAGTACTCTAA
ACTTTTGTATGTACCTTAAAGGAAGAAATTTTGGCGGGAATTTAATTTGG
CGGATGGCCAAAAAAGTTTTTTCAGAGGGAATTTAATTTGGCGGATGGAC
GAAAACACTGAATTTGGCGGGAATTTAATTTGGCGGTCGCTTAAAAATTT
AACCTTAAGATGGCGTCAAAACAGCGAAAANACGGGAATTTAATTTAGCG
GTCGCTTAAAAATTTAACCTTAAGATGGCGTCAAAACAGCAAAAAAATAG
CAAAAACACCTTATAATTTCAAAATGTTTAATTTGGCGGAAATTTAATTT
GGTGGATGGCGGAAAAAAGAAATTTTGGCGGGAACTTAATTTGGCGGATT
TCAGTCAAATCCGCCAAATAAATTTCCGCCAAAATTACTTCCTTTAAGGT
AGTTCTTTTATACCTTGATATAAAGTTATATATACCGACTAAAGCTCTAC
AACCCTATTCGATTGTTAGAAGGGATCTAGTTAGTATTGACTCCACTCTT
TATTTCTTCTAGTATCAAAAGATGGTGAGGTCTGTATATCTATACTTCAC
GAGCCAGGAGAAGATAAATTTGGATATGAGCGAGCAGAGGAAAGATGGTT
GCCAATACATACAGTAGAAACAATTTTATTATCTGTCATCTCAATGATCA
ATGAACCAAATGATGAATCACCTGCCAATGTAGATGCTGCTGTAAGAAAC
TAATGTAGAATTGTTTCCCCTGAATGATTGAGACATGTTTGAGTGGTCGC
AAAAGAGAACCCTTCTCCTTCCTTAATCTTGTTCTGTTCATTTCTTAGGT
TGTGAAGCCAACTGCTTACACTGGAGTCTATTTCTACTGAATTTTCCTTT
CTGATAATTCTAATGGCCCTGAGCCTAGGGAAGTAGACTAGAGGATTTCG
CAATCTTGGATTTTCTTCACTTTCGTTTTGAAAAATTATATAAAAATACC
CAAACATGAAATATATTCTGAAATCCCATCAAAGTTTATGAAACTAATGT
AATAAAAACATGAAATTACCTTCAAAGTTTGAAAAAATGGTCTATTTGGT
CATGGTTTTTTATTTGTTTTTCTCCAAAAAGGGACTAGATCTATGGATTT
GCTACATTCTCAAGCAAAGCCAAAAAAATGGAGTCTGTCAAATTACACTA
GGCCACTTATCAGCTGCATCAAGTCTATCAAAAAGCTATTAGTAGCCTCT
GGGCTAGCTGCTCCTGAACTTCGTGATAACTACCAATACCCGGCTAAAGG
TCCTTCGTAAACATTCCACCATTAAGATTTAGCGTTGTTAATTACCCCTC
TCCACACGTTTGCTTTTATATGCAAGTTGTTTTATTTCCTGTTTTTTTGT
ATTTCGATATTACAGAAAGAATGGAGAGACGAATACGATACCACGTTTAA
GAAGAATGTCCGAAAATGTGTCCGGAAAAGTCAAGAATTTTTATGATACT
AGTTGTTTTTCTTTTTCGAAATCATTATAAATAAACCAACAAAAAATCTA
TGTAAAAATCTTTTCTCTCAACTGTATATTATATAAACTTCCAAAAATAT
CTTTCAATTTAACACAAAAATATTTAGCTTTTTTTATTGATGCTATTTCT
GAGTTGACAGTTTTTATGTGATTTTGTAATTTTAAATTGAGTTTTGTCGT
TAGACTCTCTTTAATATTATGTCAGGTTTTTGATATTTCAATATTTTGCT
ATTCCTAATCAAATCTTGTCACTCTGTCAGAGTTTGGTTATATTTTTGGC
AAGATAAAATCTCATTGCTTTCACTTGCTTCTGATGACAAGCTTTGGCAA
AACAGGGGAGCAAAATAGTATGTCAATTTCAGATTAGTATTTGAAGAAAA
AAATCAAGAATTTAAGAGCTGTTATTTATTTTGCTCAAAATGCTTATTAT
ATAATATTAGAAAAAAGTGCAAGTGCTGCGATTTTTTTATATTTTTTGTT
AAACGATGAATATTCTATAGGAGTTTTATTTTTCGCTTTTTTGTGGCACT
TATGGTAGAAACAATCTCATTAGGGAGGGAGTGTGTCGGCGCTAAATATT
TGGTATTTGAAAAAAAGAATAGAAAATCGATCGGATTCCAGATTTGATTG
ATTTTTTTTGCTAATTTTATACCATCGAAAGACTATTATTTATGTCATAG
AATTAGTTATGCGGAAAAATCTTTGGTTGAATTTGTCCATTAATTTTTAG
AAATTTTAGGCGTATTTGTAAAGGGAGTGTTTTTTTCAGTAGTTTTCTTT
ATAGACAGGATGTTATCGCAATGTTAAACAGAAGGTTCCTATACAGGCGT
TTTATTATGAGAAAACCAACTTAAAAATACATTATAATTTGCAATAAAAA
TACTTAAACCCGATATTTTACTTTGTTCCTTTGTTTTACTCCTTTTTCAC
CTTCTGAGAATTTCGAACAATATTTGTCTAGTTTTGAGGATAATTTTCTT
GTTTTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050902-exon-scaffold_19-1575043694:67008..67833 | TCONS_00050902-exon-scaffold_19-1575043694:67008..67833 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1575043694:66180..66282 | TCONS_00050902-exon-scaffold_19-1575043694:66180..66282 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1575043694:64088..64185 | TCONS_00050902-exon-scaffold_19-1575043694:64088..64185 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1575043694:63243..63421 | TCONS_00050902-exon-scaffold_19-1575043694:63243..63421 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1575043694:61474..62568 | TCONS_00050902-exon-scaffold_19-1575043694:61474..62568 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1510915933:67008..67833 | TCONS_00050902-exon-scaffold_19-1510915933:67008..67833 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1510915933:66180..66282 | TCONS_00050902-exon-scaffold_19-1510915933:66180..66282 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1510915933:64088..64185 | TCONS_00050902-exon-scaffold_19-1510915933:64088..64185 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1510915933:63243..63421 | TCONS_00050902-exon-scaffold_19-1510915933:63243..63421 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1510915933:61474..62568 | TCONS_00050902-exon-scaffold_19-1510915933:61474..62568 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1491911889:67008..67833 | TCONS_00050902-exon-scaffold_19-1491911889:67008..67833 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1491911889:66180..66282 | TCONS_00050902-exon-scaffold_19-1491911889:66180..66282 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1491911889:64088..64185 | TCONS_00050902-exon-scaffold_19-1491911889:64088..64185 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1491911889:63243..63421 | TCONS_00050902-exon-scaffold_19-1491911889:63243..63421 | Clytia hemisphaerica | exon |
TCONS_00050902-exon-scaffold_19-1491911889:61474..62568 | TCONS_00050902-exon-scaffold_19-1491911889:61474..62568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_19 | supercontig | scaffold_19:61474..67833 - |
Blast
BLAST of TCONS_00050902 vs. Swiss-Prot (Human)
Match: UB2G1 (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3) HSP 1 Score: 263.848 bits (673), Expect = 1.388e-82 Identity = 116/166 (69.88%), Postives = 144/166 (86.75%), Query Frame = 1
Query: 781 MAADQASLLLKRQLQELTKKPVEGFSAGLVDDENLFKWEVMVMGPTDSFYEGGFFKAHLMFPQDYPQKPPKMKFISEFWHPNVSKDGEVCISILHEPGEDKFGYERAEERWLPIHTVETILLSVISMINEPNDESPANVDAAKEWRDEYDTTFKKNVRKCVRKSQE 1278
M Q++LLL+RQL EL K PVEGFSAGL+DD +L++WEV+++GP D+ YEGG FKAHL FP+DYP +PPKMKFI+E WHPNV K+G+VCISILHEPGEDK+GYE+ EERWLPIHTVETI++SVISM+ +PN +SPANVDAAKEWR++ + FK+ V +CVRKSQE
Sbjct: 1 MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166
The following BLAST results are available for this feature:
|