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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050898 ID=TCONS_00050898|Name=TCONS_00050898|organism=Clytia hemisphaerica|type=transcript|length=742bp
aattgacacttttccaatacaaatttattttcgattttagcctggaaTCC
TCGATTAATAATTGCGCGTataggccccgacaaagtcaaattttttcaac
caGTTGTTTTTTAAAGGCCCATTGCGCTGGGCGCTGGgccaaaataaaat
ttagcgtTCCCTATATTACCTGAATTcactaaaaagattttaattgaggt
aaacgttttgggggccatatactgtagaaAAAAGGGACGTTGTACTTATG
AGCGTTTGAGTAATATCTTTGATTTATCATTATAGCACAAACCCTTGACA
TATTTATTGACGCAGTACTTCACAGCATAAAACTCTTGTCAAATGGCAGC
ACCAATGAACGACTGACATCTTACTTTGACAAAGCAATTTCTCCTGCCAG
AAACGATGGTGCTGTTGACATTGATATTAGTGGTTCACCAAGGGAAAAGT
TACCACAATTTCTTGCTTTCCATTTTGTAAAGATCGAAGAAGACTATTGT
GCATCAAAGAAGTGTTTAGATAAAATTGACCTTTTAATTAAAGAGGGATG
CCCCGACATTGCTAATTTAACATCCGTTTATGTTCCTTGTTTCGATAACC
CGATGTATTATCAAATACCAATAATGACAGGTATTAAAGTCATTCACGAT
AAttttgcactcttttttctttacctataacttttgaaggaatgcTTCAA
TCtatataaatttggtatcattggaaagatattagtgagtgg Run BLAST on NCBI transcript from alignment at scaffold_19:790135..791948+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050898 ID=TCONS_00050898|Name=TCONS_00050898|organism=Clytia hemisphaerica|type=transcript|length=1814bp|location=Sequence derived from alignment at scaffold_19:790135..791948+ (Clytia hemisphaerica)
aattgacacttttccaatacaaatttattttcgattttagcctggaaTCC
TCGATTAATAATTGCGCGTataggccccgacaaagtcaaattttttcaac
caGTTGTTTTTTAAAGGCCCATTGCGCTGGGCGCTGGgccaaaataaaat
ttagcgtTCCCTATATTACCTGAATTcactaaaaagattttaattgaggt
aaacgttttgggggccatatactgtagaaAAAAGGGACGTTGTACTTATG
AGCGTTTGAGTAATATCTTTGATTTATCATTATAGCACAAACCCTTGACA
TATTTATTGACGCAGTACTTCACAGCATAAAACTCTTGTCAAATGGCAGC
ACCAATGAACGACTGACATCTTACTTTGACAAAGCAATTTCTCCTGCCAG
AAACGATGGTGCTGTTGACATTGATATTAGTGGTTCACCAAGGGAAAAGT
TACCACAATTTCTTGCTTTCCATTTTGTAAAGATCGAAGAAGACTATTGT
GCATCAAAGAAGTGTTTAGATAAAATTGACCTTTTAATTAAAGAGGGATG
CCCCGACATTGCTAATTTAACATCCGTTTATGTTCCTTGTTTCGGTAAGt
tttaatttatttgtatcCAAActataattttcataaaaagcGCACTACTT
CGAATATACGGACGgttatcatttttttgttgattaTTATTGCCACCGCA
GGGAGCCTAAAGCTCCCGAGGATAGCATTCATAGCTttacgcataaggaa
gttgggcaaacatctcataattttgcgcgcgtttttcagtattttagttc
cgcttaacgatagcattcttatcttacggtctattgttttatcatcatca
aaaagacttcgccggagttattttgatctgattacccattttgaaatgtc
agtttgcctttttcttatccctggagagttaaatgaatctaaggaaattc
ccttttctgggaaattcccttttatatcacaagtagttattaagcgctct
tcatagattaaaaatattactctactcaaagtattcgaacagttatgttg
ctaaacgtgtacattatttaataacatatgaagagcagtatcttcagata
tacgctttttataggaaaaaccagtaagtcatatgattctggctgggatg
ctcttaaatttataggagtttttcaggcttaaatgtcaatattaataatg
tcttaattttttcttaggttttggccaaatttcagactcgtattcttata
aaattgttcttataaaaaacgtgtaagacaaggcacggatgtcactctaa
gtagactgtaaatcactcccttgacacatttgttagcaattgaaagaaat
ttgtctcagatgagaggNataaccatcattctttcaaaataaacaaaaat
cgtttaattctgataaatctacaagtcagaatcttcatttcaatgaaaac
ctccgttttgtgggccgtctccgttttgggggccatatactgtatataag
aaagtacaaaatatgatctctcgcttaccagaccccCTTTTTGAAAGCGG
TCTTATATTTTtacggtacaatatgaaatacagcatttatgaaCGCGATT
TTAGtcaatcagattgctcatatttttcataacGTTTTGTATCTATATAC
AACCTTTTTTTTCTAGATAACCCGATGTATTATCAAATACCAATAATGAC
AGGTATTAAAGTCATTCACGATAAttttgcactcttttttctttacctat
aacttttgaaggaatgcTTCAATCtatataaatttggtatcattggaaag
atattagtgagtgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050898-exon-scaffold_19-1491911889:790135..790728 | TCONS_00050898-exon-scaffold_19-1491911889:790135..790728 | Clytia hemisphaerica | exon |
| TCONS_00050898-exon-scaffold_19-1510915933:790135..790728 | TCONS_00050898-exon-scaffold_19-1510915933:790135..790728 | Clytia hemisphaerica | exon |
| TCONS_00050898-exon-scaffold_19-1575043694:790135..790728 | TCONS_00050898-exon-scaffold_19-1575043694:790135..790728 | Clytia hemisphaerica | exon |
| TCONS_00050898-exon-scaffold_19-1491911889:791801..791948 | TCONS_00050898-exon-scaffold_19-1491911889:791801..791948 | Clytia hemisphaerica | exon |
| TCONS_00050898-exon-scaffold_19-1510915933:791801..791948 | TCONS_00050898-exon-scaffold_19-1510915933:791801..791948 | Clytia hemisphaerica | exon |
| TCONS_00050898-exon-scaffold_19-1575043694:791801..791948 | TCONS_00050898-exon-scaffold_19-1575043694:791801..791948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:790135..791948 + |
Blast
The following BLAST results are available for this feature:
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