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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050889 ID=TCONS_00050889|Name=TCONS_00050889|organism=Clytia hemisphaerica|type=transcript|length=768bp
CTTATTTACAATTAGAATACAACAttggaaacttataaaaactaACATAT
AAAGACAATATGGATAAAGAATATATTCGACGCATTTCACACCAAAAGCA
CCGTCGGATTATAATCACAGTACTAGCTTTAACGGCATCAATCATTAGCA
TCGGAAGTTCTTACTGGCGCCAAAATAAACATTCTACATTCAATGAAGGT
CTATGGTTTGAATGCACCAACACTGAGTGCTTCTCAAAGATGGTAACCAC
AGATTGGATGAAGAGTTGCCAAGCATTGATGGTTCTTGGATGTATTCTTA
ATTTTGTATGCACCATTCTGTTTGTGTTGAGTATCTATAGTGATGATTTA
CTCGACCCGTTGCAGAGgTATACAGGGACGATGATGTTTTTTGCTGGCAC
ATTTCACTTCATTGCATTGACGTTATATTTGGTGCGAAATATGAAGGAAG
AGGGAGCATTGAGATTGCAATGGTCTTATTTCACCGGTTGGGGagctttt
ctttttaatttcgtTTTGGTAGTGGACGTGGCTGTATTCTCATTGGCGCC
TTTGGAATAATGCTAACAAAATTCTtaagtacaaatttcaaaagaGATGC
CAAGGATAGTTGAATGGAActgttgaatggaaaaaaactttttgaactgG
AATTCCGAAATCAAGGTTTGCCTCACAATGCCAAACCCTTTCTTAAACTG
TAGTAAAAGCGTATCGAAATTTTAAAAGTAGTAGAAGTTGAACTTAAATA
TTCCCGTGTCTGTATTTA Run BLAST on NCBI protein sequence of TCONS_00050889-protein >TCONS_00050889-protein ID=TCONS_00050889-protein|Name=TCONS_00050889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MDKEYIRRISHQKHRRIIITVLALTASIISIGSSYWRQNKHSTFNEGLWF
ECTNTECFSKMVTTDWMKSCQALMVLGCILNFVCTILFVLSIYSDDLLDP
LQRYTGTMMFFAGTFHFIALTLYLVRNMKEEGALRLQWSYFTGWGAFLFN
FVLVVDVAVFSLAPLE Run BLAST on NCBI transcript from alignment at scaffold_19:706103..707682+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050889 ID=TCONS_00050889|Name=TCONS_00050889|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at scaffold_19:706103..707682+ (Clytia hemisphaerica)
CTTATTTACAATTAGAATACAACAttggaaacttataaaaactaACATAT
AAAGACAATATGGATAAAGAATATATTCGACGCATTTCACACCAAAAGCA
CCGTCGGATTATAATCACAGTACTAGCTTTAACGGCATCAATCATTAGCA
TCGGAAGTTCTTACTGGCGCCAAAATAAACATTCTACATTCAATGAAGGT
CTATGGTTTGAATGCACCAACACTGAGTGCTTCTCAAAGATGGTAACCAC
AGATTGGATGAAGAGTTGCCAAGCATTGATGGTTCTTGGATGTATTCTTA
ATTTTGTATGCACCATTCTGTTTGTGTTGAGTATCTATAGTGATGATTTA
CTCGACCCGTTGCAGAGGTACAGTGCTTTTCATTAAATCAGGTTTATTCC
AGGTTTATGGAGAAAAATTTACTGTGgtcaaagtcttttttaaggCACTG
CTAAAAAGCTCACATTTTTCTTGAATTAGTCTTAGTTTTACTTTGTTTTT
CTGAACATCGGATCCCGGAAGGTACTttggcaaaaatggatgatgggtat
gtgcggacggtatgggtcggttttttcacctttcaaagtctctctaaggg
ttggaaaaatcagaaagttttaaattagtctctctaagggtcggaaaatt
caggatttctaggaaattttttgacttccagagaaaaaattgtaataaag
tctctctaagggttggaaaaatcagaaagttttaaattagtctctctaag
ggtcggaaaattcaggatttctaggaaattttttgacttccagagaaaaa
attgtaataaagtctctctaagggtatgactttcttcaaaaatcgaaaaa
aataattcaaaaagtcagtctctctaagggtcggttttcggtcctgtccg
cacatacccctcattcgccaaccctagtactccccccccccgggcatcgG
ATCCACCAAATCTCACTTAGCCAAGCTAAAGGCTACTTTGAGGAAATTAC
GAGGACACAAGGGTTTAATATTCAAAGTAGTCAACATAATGGTTGTAAAT
GTCCTGTGATGTACCTTAACGAAACAGCGGGTCCACCATCTTTTTAAAAC
CAAGATCTTAATTCTAAATTCTATAAGAAACGTTGATATATTTCaacata
ttttctttttcctgttttttttttgccaggTATACAGGGACGATGATGTT
TTTTGCTGGCACATTTCACTTCATTGCATTGACGTTATATTTGGTGCGAA
ATATGAAGGAAGAGGGAGCATTGAGATTGCAATGGTCTTATTTCACCGGT
TGGGGagcttttctttttaatttcgtTTTGGTAGTGGACGTGGCTGTATT
CTCATTGGCGCCTTTGGAATAATGCTAACAAAATTCTtaagtacaaattt
caaaagaGATGCCAAGGATAGTTGAATGGAActgttgaatggaaaaaaac
tttttgaactgGAATTCCGAAATCAAGGTTTGCCTCACAATGCCAAACCC
TTTCTTAAACTGTAGTAAAAGCGTATCGAAATTTTAAAAGTAGTAGAAGT
TGAACTTAAATATTCCCGTGTCTGTATTTA Coding sequence (CDS) from alignment at scaffold_19:706103..707682+ >TCONS_00050889 ID=TCONS_00050889|Name=TCONS_00050889|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_19:706103..707682+ (Clytia hemisphaerica)
ATGGATAAAGAATATATTCGACGCATTTCACACCAAAAGCACCGTCGGAT
TATAATCACAGTACTAGCTTTAACGGCATCAATCATTAGCATCGGAAGTT
CTTACTGGCGCCAAAATAAACATTCTACATTCAATGAAGGTCTATGGTTT
GAATGCACCAACACTGAGTGCTTCTCAAAGATGGTAACCACAGATTGGAT
GAAGAGTTGCCAAGCATTGATGGTTCTTGGATGTATTCTTAATTTTGTAT
GCACCATTCTGTTTGTGTTGAGTATCTATAGTGATGATTTACTCGACCCG
TTGCAGAGgTATACAGGGACGATGATGTTTTTTGCTGGCACATTTCACTT
CATTGCATTGACGTTATATTTGGTGCGAAATATGAAGGAAGAGGGAGCAT
TGAGATTGCAATGGTCTTATTTCACCGGTTGGGGagcttttctttttaat
ttcgtTTTGGTAGTGGACGTGGCTGTATTCTCATTGGCGCCTTTGGAATA
AATGGATAAAGAATATATTCGACGCATTTCACACCAAAAGCACCGTCGGA
TTATAATCACAGTACTAGCTTTAACGGCATCAATCATTAGCATCGGAAGT
TCTTACTGGCGCCAAAATAAACATTCTACATTCAATGAAGGTCTATGGTT
TGAATGCACCAACACTGAGTGCTTCTCAAAGATGGTAACCACAGATTGGA
TGAAGAGTTGCCAAGCATTGATGGTTCTTGGATGTATTCTTAATTTTGTA
TGCACCATTCTGTTTGTGTTGAGTATCTATAGTGATGATTTACTCGACCC
GTTGCAGAGgTATACAGGGACGATGATGTTTTTTGCTGGCACATTTCACT
TCATTGCATTGACGTTATATTTGGTGCGAAATATGAAGGAAGAGGGAGCA
TTGAGATTGCAATGGTCTTATTTCACCGGTTGGGGagcttttctttttaa
tttcgtTTTGGTAGTGGACGTGGCTGTATTCTCATTGGCGCCTTTGGAAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050889-exon-scaffold_19-1491911889:706103..706469 | TCONS_00050889-exon-scaffold_19-1491911889:706103..706469 | Clytia hemisphaerica | exon |
| TCONS_00050889-exon-scaffold_19-1510915933:706103..706469 | TCONS_00050889-exon-scaffold_19-1510915933:706103..706469 | Clytia hemisphaerica | exon |
| TCONS_00050889-exon-scaffold_19-1575043694:706103..706469 | TCONS_00050889-exon-scaffold_19-1575043694:706103..706469 | Clytia hemisphaerica | exon |
| TCONS_00050889-exon-scaffold_19-1491911889:707282..707682 | TCONS_00050889-exon-scaffold_19-1491911889:707282..707682 | Clytia hemisphaerica | exon |
| TCONS_00050889-exon-scaffold_19-1510915933:707282..707682 | TCONS_00050889-exon-scaffold_19-1510915933:707282..707682 | Clytia hemisphaerica | exon |
| TCONS_00050889-exon-scaffold_19-1575043694:707282..707682 | TCONS_00050889-exon-scaffold_19-1575043694:707282..707682 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:706103..707682 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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