|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050888 ID=TCONS_00050888|Name=TCONS_00050888|organism=Clytia hemisphaerica|type=transcript|length=1034bp
AATGAAGAGAAAAATagcttatttttgaaaatttcctccttCAGCCGCGT
ATAAACACGGCCAAATAACCAGTCACATCATATCTCAATATAAATACGGC
TGAGATTATGCATGCATGTAATTTTTCTCTATCGTATCaataagttgaaa
atttttcttttccgtCTCATGATATTAACTAGCTGTGCTCACTGGTCGTG
TTATTGATAAGAAGTTTTATGCTATCAGTTTCTAATTGACTAATTTGTTA
CAAACTGACTGACACGGGAGAACTTTTACTTACTATTGACAAGAAGTTTG
GAAGTGTCGATTTCAAAGTTAATATATCATCATGCCAAAGTGTCCAAAAT
GCAATAAAGAAGTTTATTTCGctgaaaaagtgacgtcacttGGTAAAGAT
TGGCACAGACCATGCTTAAGATgtgaaaaatgcaataaaacaTTATCATC
AGGGGGCCACGCTGAGCATGAAGGAAAACCTTACTGCAACAAACCATGTT
ATTCGGCTCTTTTTGGGCCGGGAGGCTTCGGACATGGTGGTGCCGAGTCA
CACAAATATTAGTATAACCAAGGGTGTAGCCCACGAAaccttgtaaaaat
attttatcttttatatCTTTTACCTAGTTTAAGCGCATTTTTGGGCTTTC
TTAACCTTGTGTGTATTTAGCAAGGCTTTCTTAACCTTGTGTGTATTNCA
TTTTTTGGGCTTTCTTAACCTTGTGTGTATTTAGCAAGGCtcaaaaaaca
attctaaatTAGCTTTTAAGCTaataataatattaataataaaatttaag
ccaaatttggcaaaatttaaaagaatctTTGATACATATATATGGTGTAA
TATTTATATTTAAAGTCATTGATTTATAtaacttgaaaaaataaattaaa
gctATAACTAAAAAAGTTTGATCTTGTActggatatatttttcaatattt
cgtCTTTAGAGGTCAAAATATGCATATTTACTAGTTACTGAAAAAGGATC
TTTTACCTACACTATACAAGGTTTAAAAcaattt Run BLAST on NCBI transcript from alignment at scaffold_19:665449..669911+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050888 ID=TCONS_00050888|Name=TCONS_00050888|organism=Clytia hemisphaerica|type=transcript|length=4463bp|location=Sequence derived from alignment at scaffold_19:665449..669911+ (Clytia hemisphaerica)
AATGAAGAGAAAAATagcttatttttgaaaatttcctccttCAGCCGCGT
ATAAACACGGCCAAATAACCAGTCACATCATATCTCAATATAAATACGGC
TGAGATTATGCATGCATGTAATTTTTCTCTATCGTATCaataagttgaaa
atttttcttttccgtCTCATGATATTAACTAGCTGTGCTCACTGGTCGTG
TTATTGATAAGAAGTTTTATGCTATCAGTTTCTAATTGACTAATTTGTTA
CAAACTGACTGACACGGGAGAACTTTTACTTACTATTGACAAGAAGTTTG
GAAGTGTCGATTTCAAAGTTAATATATCATCATGCCAAAGTGTCCAAAAT
GCAATAAAGAAGTTTATTTCGGTAAGGCTAGTTAATTCTcgcttttctta
tttttcaagtCACCCTTGTAATATAGCTTGGTCTAGATTTTTTGGTTTTG
ACGAGTGGATATTATAATTCAAATTTAATCTCCAAGAACCCTCGTTTTCT
CTCCTACCTAGCATTACTTGGACTTTAGAACTAGAATGatccagaggaat
gtaaagagatggaaaaacagcttttctgattactcaaagttcaacgatca
cttctattgaaaattctatcgtaaaaacgttgattatNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNgctaggaaattctgagcaagaagatataggt
accttttcgtataagagaagtgtacccaaaatataagccctaaaagtttg
cgcataatcaggtttgaaacaaaagaattttgtcacaactcgctaattat
gcagattttttatagcgacgacaaaagaaacctatttactcaacataaac
tcccttaagggcaagagacctggtatatgacgagccgtttttccattgct
ttcaagaagctgtttttccatctctttacattcctctagcTTTGAAGGAA
GCTTTACAGACAAAAGTCATTATTTTTGCACACGGTCATGTACGTCCATT
CTTATTTGATGACGTCTCACTTGATATCAATGAATATCAATGATATGAGA
GGGGCTTCACTAAGGACAAACCACAAAGAGATATTTCACTCTAAAACCTC
TAGCGTGACATTACTTATAAACTGATAAGGATGCATACAGTACTGATAAA
CCATTAAGAAGCtgttcgaaaaaaagttttaaaggaCAAAAAGGACGCGG
TCAGgtcgcgcggtcaggtgcgtgccacttaactatttaattatccccct
aaactcgatccaatccttttttatcCATTGTCTAtaagtgcgaaaaaagg
actgggacggttttagttgAATAAAGCGGACacaaaaatgcccgcgcggc
aattggcggcttcGGTCGAAAAGTTTTATTAATTGTCTTGTTTTTGCAGC
AGTTTCTGTAACTCTACGATTAAAACGAATTATACCTCGTCGCATCATAA
TACAACGGGTACTTTAGAcgcaattaaaaaataaatctatCAAATAGCTG
TAGATAATCGCTTTACGGAAGCTTCTACCAATGTACTGTGTGCAAAAATA
TTTCCAATGATTGTCTTCATAATCCAAAGGAATATTGGTATAATTTTTAA
AGAGCACTAGCAGAACGAAGCATTTATATAATTTCAGATCCTAAACGTCG
AATGAAGAGAGTCTgtcacaaaaaatgttcttcaaaAACCTACACCCTGG
AAATTGGTGAAAATGACAAAATGTTGACCTCTTCAGAAATATGGCTTTCA
AAATTTATCGAATTTGTGACCTTAAGAAATTTCAGAGCCTGAGAAAATCA
CCCTGCCATAGCATACACTTTTTACCTATACCTGAACGACCTCCCTTCAC
TTTTCTACGTTTCTTTCTTTTGacttgtgatttgattggtatGGTCTCAT
CCACGATCAtcgcagtagcgtagacaggaggggcgcaaaatttgtgtagg
agagcgcACATTTTTATGGcacagtaattatctattcataatataaaaag
attaCTGTGACAttaaaatctgctctcctacacaaattttgcgccccccc
ccccttggctacgctactgcaTCGATGATTGTCATGGTCACTTTTGTATT
CATCCTCATTTGTCGTCACAGCGTAAATTCATACCCTTTGATACTTGCGG
TGTTCAAAAAGTCgtaaaaaattcttttattttcgaCTTTTCTTAAAATG
GGAGAAATTGTTCAGTTtatcaaaaaatggtaaaaatttgCAGTGTCTTC
ATGTCTCTGAGTAAGTCAGAATAAAAACTACTCAATTTAAACGAGtctaa
aacatatcaaaattctGAGGGCTGGTTAATCTGTAAATCTTATACAAACC
TACAGGTTTGTTATCTCCCCTtagtttgacatttttaaatGCCATAACAA
AAGGTATTTTTATCGTCTCAATATATTATTTAATAAAGTGGTCTTGAGAA
TGGGGCGTGTTATTTTTCCTAAAACAAAGCAGCACATAGGAATTTCAaga
gactcaaaaaaattgcctACCCAAGGGTAGGGAGGGAGAcactccctgga
ttgctccatttacctttaatctttcttttaattgctgagcattcagcaga
gaggcatcaagtaccatttttgtacTAAATATGAAGTCTTTGATATGACC
CGATCGGGGATTAGCAGATAGCCGTAGCCGATACGATACGATATTATCAG
TaaactaaaagtaaaaaaattcctGTAATGTACATGActtcaatttctta
atttttctcaCATTGTAgctgaaaaagtgacgtcacttGGTAAAGATTGG
CACAGACCATGCTTAAGATgtgaaaaatgcaataaaacaTTATCATCAGG
GGGCCACGCTGAGGTAAGACTTTGtgtttttaaatcgaaatattcagGTT
AAAACTGTACATGCCAAGGCTATTTTGTTCCTGGACCTCTGGAAGTCCTA
CCGGACTCTATAGTGTAACTTAGCAAGTTTATGTACGTGTGTTTTTCTGC
AACGGAGATGCTTCTGGTTTGACTAGGTAGATCCTCGATCATCTGAGGAT
GAAGGAAAAAAAGCACTTCTGCCGTCCTTGAATTTTTGGATCAAAACTCC
GGGTTACTCctaatcgcttcagtcactccaccgtccccaaaaaaggaaaa
atacataaacttgctactgtctaaatttgagaTGTACGTATTTTATTTGT
ATAAAATTTAGGGAAGAGACAATACTTTCAATAAAGGAATTCTGATTTTT
TATTGTACGATCTCGTAATAATTctcatatttttctttattatagCATGA
AGGAAAACCTTACTGCAACAAACCATGTTATTCGGCTCTTTTTGGGCCGG
GAGGCTTCGGACATGGTGGTGCCGAGTCACACAAATATTAGTATAACCAA
GGGTGTAGCCCACGAAaccttgtaaaaatattttatcttttatatCTTTT
ACCTAGTTTAAGCGCATTTTTGGGCTTTCTTAACCTTGTGTGTATTTAGC
AAGGCTTTCTTAACCTTGTGTGTATTNCATTTTTTGGGCTTTCTTAACCT
TGTGTGTATTTAGCAAGGCtcaaaaaacaattctaaatTAGCTTTTAAGC
Taataataatattaataataaaatttaagccaaatttggcaaaatttaaa
agaatctTTGATACATATATATGGTGTAATATTTATATTTAAAGTCATTG
ATTTATAtaacttgaaaaaataaattaaagctATAACTAAAAAAGTTTGA
TCTTGTActggatatatttttcaatatttcgtCTTTAGAGGTCAAAATAT
GCATATTTACTAGTTACTGAAAAAGGATCTTTTACCTACACTATACAAGG
TTTAAAAcaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050888-exon-scaffold_19-1491911889:665449..665819 | TCONS_00050888-exon-scaffold_19-1491911889:665449..665819 | Clytia hemisphaerica | exon |
| TCONS_00050888-exon-scaffold_19-1510915933:665449..665819 | TCONS_00050888-exon-scaffold_19-1510915933:665449..665819 | Clytia hemisphaerica | exon |
| TCONS_00050888-exon-scaffold_19-1575043694:665449..665819 | TCONS_00050888-exon-scaffold_19-1575043694:665449..665819 | Clytia hemisphaerica | exon |
| TCONS_00050888-exon-scaffold_19-1491911889:668817..668911 | TCONS_00050888-exon-scaffold_19-1491911889:668817..668911 | Clytia hemisphaerica | exon |
| TCONS_00050888-exon-scaffold_19-1510915933:668817..668911 | TCONS_00050888-exon-scaffold_19-1510915933:668817..668911 | Clytia hemisphaerica | exon |
| TCONS_00050888-exon-scaffold_19-1575043694:668817..668911 | TCONS_00050888-exon-scaffold_19-1575043694:668817..668911 | Clytia hemisphaerica | exon |
| TCONS_00050888-exon-scaffold_19-1491911889:669344..669911 | TCONS_00050888-exon-scaffold_19-1491911889:669344..669911 | Clytia hemisphaerica | exon |
| TCONS_00050888-exon-scaffold_19-1510915933:669344..669911 | TCONS_00050888-exon-scaffold_19-1510915933:669344..669911 | Clytia hemisphaerica | exon |
| TCONS_00050888-exon-scaffold_19-1575043694:669344..669911 | TCONS_00050888-exon-scaffold_19-1575043694:669344..669911 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:665449..669911 + |
Blast
BLAST of TCONS_00050888 vs. Swiss-Prot (Human)
Match: CRIP1 (Cysteine-rich protein 1 OS=Homo sapiens GN=CRIP1 PE=1 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 5.245e-34 Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 2
Query: 332 MPKCPKCNKEVYFAEKVTSLGKDWHRPCLRCEKCNKTLSSGGHAEHEGKPYCNKPCYSALXXXXXXXXXXAESHKY 559
MPKCPKCNKEVYFAE+VTSLGKDWHRPCL+CEKC KTL+SGGHAEHEGKPYCN PCY+A+FGP GFG GGAESH +
Sbjct: 1 MPKCPKCNKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYAAMFGPKGFGRGGAESHTF 76
The following BLAST results are available for this feature:
|
