TCONS_00050881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050881
Unique NameTCONS_00050881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050881 ID=TCONS_00050881|Name=TCONS_00050881|organism=Clytia hemisphaerica|type=transcript|length=600bp
TTCTGGATATATTTCAGGATTGACATGAAATTGAAATCACTAGCTAAAGA
ACTCTTGAAGTCGCCCAGAATATATACAGATATTTATTATATCTTTATCT
CAAGCTTTTGTtaatatttcattgattttaaataatatgaGATAAACAAT
TTCAGATATTTATCTTTAAAATATCTATTTTATCTTTAAGTTTTTATTTG
CATACAAAAGATATAAATAgtgtataaaatattttaatatatgTAAAATA
GTTCCAAGGAAAAAAGCAATTATCCCCAAAAGATAAAGGTCAAATCCGTT
TTTTCATGTGCTTCCGATGAGAAACTTAACGTAATTTTGACCATGTTGAG
GGGGTGGGATTTGGCTTTGGAAAAAGGAACATGTACAGGTCTGTGAACAG
GGCATTTTCGGGGTAGGAAATGCCTTTTTTCGGGGATGGGATTTGGCTTT
GGAAAAAGGAACATGTACAGGTCTGGGAACAGTACATTTTTGGGGTGGGA
AATGCCTTTTTTCGGGGCTGGGGAAAATGGAACTTGTACAGGTCTGGGAA
CAGGGCATTTTCGGGGTGGGAAATGCCCATTTTCGGGGGTGGGATTTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_19:470095..470776+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050881 ID=TCONS_00050881|Name=TCONS_00050881|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at scaffold_19:470095..470776+ (Clytia hemisphaerica)
TTCTGGATATATTTCAGGATTGACATGAAATTGAAATCACTAGCTAAAGA
ACTCTTGAAGTCGCCCAGAATATATACAGATATTTATTATATCTTTATCT
CAAGCTTTTGTtaatatttcattgattttaaataatatgaGATAAACAAT
TTCAGATATTTATCTTTAAAATATCTATTTTATCTTTAAGTTTTTATTTG
CATACAAAAGATATAAATAgtgtataaaatattttaatatatgTAAAATA
GTTCCAAGGAAAAAAGCAATTATCCCCAAAAGATAAAGGTCAAATCCGTT
TTTTCATGTGCTTCCGATGAGAAACTTAACGTAATTTTGACCATGTTGAG
GGGGTGGGATTTGGCTTTGGAAAAAGGAACATGTACAGGTCTGGgaacag
tacattttgggggtggGAAATGCCTTTTTTCGGGGCTTGGATTTGGCTGG
GGAAAATGGAACGCGTACAGGTCTGTGAACAGGGCATTTTCGGGGTAGGA
AATGCCTTTTTTCGGGGATGGGATTTGGCTTTGGAAAAAGGAACATGTAC
AGGTCTGGGAACAGTACATTTTTGGGGTGGGAAATGCCTTTTTTCGGGGC
TGGGGAAAATGGAACTTGTACAGGTCTGGGAACAGGGCATTTTCGGGGTG
GGAAATGCCCATTTTCGGGGGTGGGATTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032246XLOC_032246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050881-exon-scaffold_19-1491911889:470095..470482TCONS_00050881-exon-scaffold_19-1491911889:470095..470482Clytia hemisphaericaexon
TCONS_00050881-exon-scaffold_19-1510915933:470095..470482TCONS_00050881-exon-scaffold_19-1510915933:470095..470482Clytia hemisphaericaexon
TCONS_00050881-exon-scaffold_19-1575043694:470095..470482TCONS_00050881-exon-scaffold_19-1575043694:470095..470482Clytia hemisphaericaexon
TCONS_00050881-exon-scaffold_19-1491911889:470565..470776TCONS_00050881-exon-scaffold_19-1491911889:470565..470776Clytia hemisphaericaexon
TCONS_00050881-exon-scaffold_19-1510915933:470565..470776TCONS_00050881-exon-scaffold_19-1510915933:470565..470776Clytia hemisphaericaexon
TCONS_00050881-exon-scaffold_19-1575043694:470565..470776TCONS_00050881-exon-scaffold_19-1575043694:470565..470776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:470095..470776 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.597384	0.939276	0.634733	0.844474	1.24906	2.38452	1.59976	1.58113	0.485164	1.17939	0.593778	0.623512	0.352397	0.929942	0.257614	0.289943	0.138097	0.295472	0	0.449258	0.280076	0.294429	6.19851	6.74889	0.681934	1.82284	6.76904	3.30846	44.2238	28.0557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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