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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050880 ID=TCONS_00050880|Name=TCONS_00050880|organism=Clytia hemisphaerica|type=transcript|length=735bp
ATTACCATGGTTTGTGTAAGACGTGTAAGACGAAGTTTTACAGACACTGG
ACAGAAAATAAAGATGGATATCGAACGTATTTCACAGATGGAGATGACTA
CTTTATGATCACGTCATCCATAGCTTTTACGACACGATATCTAGAGAGGA
TTTCTCTACAGATTTGTATTGGTGCTACAAGTTTTGATAAGATTTCCGAA
ATGTACAATGTTGAATTTGGAATTGATGACTCTACAAAGAAACTGATTGC
CGAAGTCATCGAAAATCATTGGCTCATAAAACGACTAATAAGCATTTGCC
CCACAATGTTATGGCACAGAAAGGACCACAATAAACATTTCGATATTGAA
AAGATATGTGAAGATGTGTATCCAACCTTGAAAAAAGTAATCGATCAAAA
ATGGTTTTCACACGAATGTAACGAGACAGGTTGCAAGAATATGATGGTTG
TAATCGACGGAAACGAAAAATTGTATCGATATTGTTGCGCTAAACCGATA
ACTAAGTTGCCTCACGAGATAGTAGAAGTTAACAAAGTTGTTCGTTGTAT
AAATAATCCGGTTAGAGGAAATCAATCTTTAAAAGGATCCAAATTATGCC
ACATCCACTCTAACGAGTCAGGagagatgaaaaatgaaatcaaaaatgaa
agattAGACCTTTATCCTATGACTAGACAAAGAGTAAAGCTATTGGAGAA
TGTTATTACAAGTGGAGAAGGTTGCAAGAAAGAAG Run BLAST on NCBI protein sequence of TCONS_00050880-protein >TCONS_00050880-protein ID=TCONS_00050880-protein|Name=TCONS_00050880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
YHGLCKTCKTKFYRHWTENKDGYRTYFTDGDDYFMITSSIAFTTRYLERI
SLQICIGATSFDKISEMYNVEFGIDDSTKKLIAEVIENHWLIKRLISICP
TMLWHRKDHNKHFDIEKICEDVYPTLKKVIDQKWFSHECNETGCKNMMVV
IDGNEKLYRYCCAKPITKLPHEIVEVNKVVRCINNPVRGNQSLKGSKLCH
IHSNESGEMKNEIKNERLDLYPMTRQRVKLLENVITSGEGCKKE Run BLAST on NCBI transcript from alignment at scaffold_19:433959..434853+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050880 ID=TCONS_00050880|Name=TCONS_00050880|organism=Clytia hemisphaerica|type=transcript|length=895bp|location=Sequence derived from alignment at scaffold_19:433959..434853+ (Clytia hemisphaerica)
ATTACCATGGTTTGTGTAAGACGTGTAAGACGAAGTTTTACAGACACTGG
ACAGAAAATAAAGATGGATATCGAACGTATTTCACAGATGGAGATGACTA
CTTTATGATCACGTCATCCATAGCTTTTACGACACGATATCTAGAGAGGA
TTTCTCTACAGATTTGTATTGGTGCTACAAGTTTTGATAAGATTTCCGAA
ATGTACAATGTTGAATTTGGAATTGATGACTCTACAAAGAAACTGATTGC
CGAAGTCATCGAAAATCATTGGCTCATAAAACGACTAATAAGCATTTGCC
CCACAATGTTATGGCACAGAAAGGACCACAATAAACATTTCGATATTGAA
AAGATATGTGAAGATGTGTATCCAACCTTGAAAAAAGTAATCGATCAAAA
ATGGTTTTCACACGAATGTAACGAGACAGGTAATTCGGATACATTTTGAA
CTTGATTCATTTTATCATTATATGTGTAGgcttaaattgaaaaaatgact
attacacccctgtctcagcaTCCCGGTTAAATTGTTTCCCAGTGgggttt
ttcaaaattaatcaaaataatGACTTTTCTAAATTATAGGTTGCAAGAAT
ATGATGGTTGTAATCGACGGAAACGAAAAATTGTATCGATATTGTTGCGC
TAAACCGATAACTAAGTTGCCTCACGAGATAGTAGAAGTTAACAAAGTTG
TTCGTTGTATAAATAATCCGGTTAGAGGAAATCAATCTTTAAAAGGATCC
AAATTATGCCACATCCACTCTAACGAGTCAGGagagatgaaaaatgaaat
caaaaatgaaagattAGACCTTTATCCTATGACTAGACAAAGAGTAAAGC
TATTGGAGAATGTTATTACAAGTGGAGAAGGTTGCAAGAAAGAAG Coding sequence (CDS) from alignment at scaffold_19:433959..434853+ >TCONS_00050880 ID=TCONS_00050880|Name=TCONS_00050880|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_19:433959..434853+ (Clytia hemisphaerica)
TACCATGGTTTGTGTAAGACGTGTAAGACGAAGTTTTACAGACACTGGAC
AGAAAATAAAGATGGATATCGAACGTATTTCACAGATGGAGATGACTACT
TTATGATCACGTCATCCATAGCTTTTACGACACGATATCTAGAGAGGATT
TCTCTACAGATTTGTATTGGTGCTACAAGTTTTGATAAGATTTCCGAAAT
GTACAATGTTGAATTTGGAATTGATGACTCTACAAAGAAACTGATTGCCG
AAGTCATCGAAAATCATTGGCTCATAAAACGACTAATAAGCATTTGCCCC
ACAATGTTATGGCACAGAAAGGACCACAATAAACATTTCGATATTGAAAA
GATATGTGAAGATGTGTATCCAACCTTGAAAAAAGTAATCGATCAAAAAT
GGTTTTCACACGAATGTAACGAGACAGGTTGCAAGAATATGATGGTTGTA
ATCGACGGAAACGAAAAATTGTATCGATATTGTTGCGCTAAACCGATAAC
TAAGTTGCCTCACGAGATAGTAGAAGTTAACAAAGTTGTTCGTTGTATAA
ATAATCCGGTTAGAGGAAATCAATCTTTAAAAGGATCCAAATTATGCCAC
ATCCACTCTAACGAGTCAGGagagatgaaaaatgaaatcaaaaatgaaag
attAGACCTTTATCCTATGACTAGACAAAGAGTAAAGCTATTGGAGAATG
TTATTACAAGTGGAGAAGGTTGCAAGAAAGAATACCATGGTTTGTGTAAG
ACGTGTAAGACGAAGTTTTACAGACACTGGACAGAAAATAAAGATGGATA
TCGAACGTATTTCACAGATGGAGATGACTACTTTATGATCACGTCATCCA
TAGCTTTTACGACACGATATCTAGAGAGGATTTCTCTACAGATTTGTATT
GGTGCTACAAGTTTTGATAAGATTTCCGAAATGTACAATGTTGAATTTGG
AATTGATGACTCTACAAAGAAACTGATTGCCGAAGTCATCGAAAATCATT
GGCTCATAAAACGACTAATAAGCATTTGCCCCACAATGTTATGGCACAGA
AAGGACCACAATAAACATTTCGATATTGAAAAGATATGTGAAGATGTGTA
TCCAACCTTGAAAAAAGTAATCGATCAAAAATGGTTTTCACACGAATGTA
ACGAGACAGGTTGCAAGAATATGATGGTTGTAATCGACGGAAACGAAAAA
TTGTATCGATATTGTTGCGCTAAACCGATAACTAAGTTGCCTCACGAGAT
AGTAGAAGTTAACAAAGTTGTTCGTTGTATAAATAATCCGGTTAGAGGAA
ATCAATCTTTAAAAGGATCCAAATTATGCCACATCCACTCTAACGAGTCA
GGagagatgaaaaatgaaatcaaaaatgaaagattAGACCTTTATCCTAT
GACTAGACAAAGAGTAAAGCTATTGGAGAATGTTATTACAAGTGGAGAAG
GTTGCAAGAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050880-exon-scaffold_19-1491911889:433959..434387 | TCONS_00050880-exon-scaffold_19-1491911889:433959..434387 | Clytia hemisphaerica | exon |
| TCONS_00050880-exon-scaffold_19-1510915933:433959..434387 | TCONS_00050880-exon-scaffold_19-1510915933:433959..434387 | Clytia hemisphaerica | exon |
| TCONS_00050880-exon-scaffold_19-1575043694:433959..434387 | TCONS_00050880-exon-scaffold_19-1575043694:433959..434387 | Clytia hemisphaerica | exon |
| TCONS_00050880-exon-scaffold_19-1491911889:434548..434853 | TCONS_00050880-exon-scaffold_19-1491911889:434548..434853 | Clytia hemisphaerica | exon |
| TCONS_00050880-exon-scaffold_19-1510915933:434548..434853 | TCONS_00050880-exon-scaffold_19-1510915933:434548..434853 | Clytia hemisphaerica | exon |
| TCONS_00050880-exon-scaffold_19-1575043694:434548..434853 | TCONS_00050880-exon-scaffold_19-1575043694:434548..434853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:433959..434853 + |
Blast
The following BLAST results are available for this feature:
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