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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050876 ID=TCONS_00050876|Name=TCONS_00050876|organism=Clytia hemisphaerica|type=transcript|length=2534bpRun BLAST on NCBI protein sequence of TCONS_00050876-protein >TCONS_00050876-protein ID=TCONS_00050876-protein|Name=TCONS_00050876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=794bp MDVSTESILSGEEKEVLDGLEFPEEVEEALKEVISGTDPLDGKDFNPVDYRun BLAST on NCBI transcript from alignment at scaffold_19:165253..212707+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050876 ID=TCONS_00050876|Name=TCONS_00050876|organism=Clytia hemisphaerica|type=transcript|length=47455bp|location=Sequence derived from alignment at scaffold_19:165253..212707+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_19:165253..212707+ >TCONS_00050876 ID=TCONS_00050876|Name=TCONS_00050876|organism=Clytia hemisphaerica|type=CDS|length=52470bp|location=Sequence derived from alignment at scaffold_19:165253..212707+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050876 vs. Swiss-Prot (Human)
Match: VPS53 (Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1) HSP 1 Score: 773.467 bits (1996), Expect = 0.000e+0 Identity = 382/680 (56.18%), Postives = 497/680 (73.09%), Query Frame = 2
Query: 158 LEFPEEVEEALKEVISGTDPLDGKDFNPVDYINALFPTEQSLANIDEVVARIRMRIRKLDDDIRSSIRSQTDSESNGKQALEAAKDDIHEVFSKIKDIKEKADKSEDMVKEITRDIKQLDHGKRHLTSSITTLNHLHMLVGGVDSLQVLSRNRKYGEVANLLQGVLNVLDHFKKYMSIPQIKQLADKVNIIXXXXXXXXXXDFKNSLSDPDLKPITGPDSMICNACKVINVLEPKIREDILTWLINKQLSDYLNVFNENFDVAWIDKIDRRYAWLKRILIQFEEDYQHTFPTEWNVEERICTQFCITTKQELSKIMNERRGEIDVKLLLFAIQRTTAFEGFLEKRFA---------------------------------YTHHRGDKSQ------TENHFQGLVSKCFENHLHIYIEAQDKNLAELIDKFIADLKMQGVPKLGDDTEGAVLPSAGELFVFYKKCMVQCIQLSTGNALLLLTETFRKYLAEYANRLLLGNLPK-VTSGGGL--ANILKDKDNE--VKFNEDEKRLICCILTTSEYCQETTQQLQDKLKEKVNPDLVEKIDLNNEQDLLHSVISNSIQLLVQDLENACEPALTTMVKVHWQSIESVGDQSGYVTAIVSHLRKSLPIIRDNLFSSRKYFTQFCIKFVNSFIPRFINNIYRCKPLSAIGAEQL 2065
L+ EV+ A+++V DPLD DFN V+YIN LFPTEQSLANIDEVV +IR++IR+LDD+IR+ +R QT+ +G+QALE A+ I ++F KIKDIK+KA+KSE MVKEITRDIKQLDH KRHLT+SITTLNHLHML GGVDSL+ ++R R+YGEVANLLQGV+NVL+HF KYM IPQI+QL+++V Q + QQ++ADF+ + K GP +++ +AC V N+L+P+I+++I+ I + LS+YL +F EN DVAW+DKIDRRYAW+KR L+ +EE Y FP EW + ERI +FC T+ EL+KIM R EI+VKLLLFAIQRTT FEGFL KRF+ +GD Q +N F G+VSKCFE HL++YIE+QDKNL ELID+F+AD K QG PK D GAVLPS +LFV+YKKCMVQC QLSTG ++ LT F+KYL EYA ++L GNLPK TS GGL +++LK+K+ KF +E LIC IL+T+EYC TTQQL++KLKEKV+ L+E+I+L E D +VIS+SIQLLVQDL+ AC+PALT M K+ WQ++E VGDQS YVT+++ H+++++PIIRDNL S+RKYFTQFC+KF NSFIP+FI ++++CKP+S +GAEQ+
Sbjct: 17 LQLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTKRPGGPSNVLRDACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLESPPPSTNPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTLEELCLICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISMVGAEQV 696 The following BLAST results are available for this feature:
BLAST of TCONS_00050876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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