TCONS_00050876-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050876-protein
Unique Name	TCONS_00050876-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	794

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050876-protein ID=TCONS_00050876-protein|Name=TCONS_00050876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=794bp
MDVSTESILSGEEKEVLDGLEFPEEVEEALKEVISGTDPLDGKDFNPVDY
INALFPTEQSLANIDEVVARIRMRIRKLDDDIRSSIRSQTDSESNGKQAL
EAAKDDIHEVFSKIKDIKEKADKSEDMVKEITRDIKQLDHGKRHLTSSIT
TLNHLHMLVGGVDSLQVLSRNRKYGEVANLLQGVLNVLDHFKKYMSIPQI
KQLADKVNIIQAAMAQQVVADFKNSLSDPDLKPITGPDSMICNACKVINV
LEPKIREDILTWLINKQLSDYLNVFNENFDVAWIDKIDRRYAWLKRILIQ
FEEDYQHTFPTEWNVEERICTQFCITTKQELSKIMNERRGEIDVKLLLFA
IQRTTAFEGFLEKRFAYTHHRGDKSQTENHFQGLVSKCFENHLHIYIEAQ
DKNLAELIDKFIADLKMQGVPKLGDDTEGAVLPSAGELFVFYKKCMVQCI
QLSTGNALLLLTETFRKYLAEYANRLLLGNLPKVTSGGGLANILKDKDNE
VKFNEDEKRLICCILTTSEYCQETTQQLQDKLKEKVNPDLVEKIDLNNEQ
DLLHSVISNSIQLLVQDLENACEPALTTMVKVHWQSIESVGDQSGYVTAI
VSHLRKSLPIIRDNLFSSRKYFTQFCIKFVNSFIPRFINNIYRCKPLSAI
GAEQLLLDAHSIKTALLDLPSIGSTVQRKPPASFTKVVIKGMSKAEMILK
VVMSPHASQTSFVESYIKLLNDTDTTNFQKLLEMKGLKRSEQHSMLEIFR
SQMATSNLSTNSSMNTSKESSGGGGIVSESSRIKRLEKLIKKQF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032242	XLOC_032242	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050876	TCONS_00050876	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007234	Vps53_N

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..134
None	No IPR available	GENE3D	1.10.287.500		coord: 56..608 e-value: 5.0E-4 score: 19.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 757..777
IPR007234	Vps53-like, N-terminal	PFAM	PF04100	Vps53_N	coord: 43..416 e-value: 2.2E-140 score: 467.9

Blast

[Close]

BLAST of TCONS_00050876-protein vs. Swiss-Prot (Human)
Match: VPS53 (Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1)

HSP 1 Score: 789.645 bits (2038), Expect = 0.000e+0
Identity = 382/680 (56.18%), Postives = 497/680 (73.09%), Query Frame = 0

Query:   20 LEFPEEVEEALKEVISGTDPLDGKDFNPVDYINALFPTEQSLANIDEVVARIRMRIRKLDDDIRSSIRSQTDSESNGKQALEAAKDDIHEVFSKIKDIKEKADKSEDMVKEITRDIKQLDHGKRHLTSSITTLNHLHMLVGGVDSLQVLSRNRKYGEVANLLQGVLNVLDHFKKYMSIPQIKQLADKVNIIQAAMAQQVVADFKNSLSDPDLKPITGPDSMICNACKVINVLEPKIREDILTWLINKQLSDYLNVFNENFDVAWIDKIDRRYAWLKRILIQFEEDYQHTFPTEWNVEERICTQFCITTKQELSKIMNERRGEIDVKLLLFAIQRTTAFEGFLEKRFA---------------------------------YTHHRGDKSQ------TENHFQGLVSKCFENHLHIYIEAQDKNLAELIDKFIADLKMQGVPKLGDDTEGAVLPSAGELFVFYKKCMVQCIQLSTGNALLLLTETFRKYLAEYANRLLLGNLPK-VTSGGGL--ANILKDKDNE--VKFNEDEKRLICCILTTSEYCQETTQQLQDKLKEKVNPDLVEKIDLNNEQDLLHSVISNSIQLLVQDLENACEPALTTMVKVHWQSIESVGDQSGYVTAIVSHLRKSLPIIRDNLFSSRKYFTQFCIKFVNSFIPRFINNIYRCKPLSAIGAEQL 655
            L+   EV+ A+++V    DPLD  DFN V+YIN LFPTEQSLANIDEVV +IR++IR+LDD+IR+ +R QT+   +G+QALE A+  I ++F KIKDIK+KA+KSE MVKEITRDIKQLDH KRHLT+SITTLNHLHML GGVDSL+ ++R R+YGEVANLLQGV+NVL+HF KYM IPQI+QL+++V   Q  + QQ++ADF+ +      K   GP +++ +AC V N+L+P+I+++I+   I + LS+YL +F EN DVAW+DKIDRRYAW+KR L+ +EE Y   FP EW + ERI  +FC  T+ EL+KIM  R  EI+VKLLLFAIQRTT FEGFL KRF+                                     +GD  Q       +N F G+VSKCFE HL++YIE+QDKNL ELID+F+AD K QG PK   D  GAVLPS  +LFV+YKKCMVQC QLSTG  ++ LT  F+KYL EYA ++L GNLPK  TS GGL  +++LK+K+     KF  +E  LIC IL+T+EYC  TTQQL++KLKEKV+  L+E+I+L  E D   +VIS+SIQLLVQDL+ AC+PALT M K+ WQ++E VGDQS YVT+++ H+++++PIIRDNL S+RKYFTQFC+KF NSFIP+FI ++++CKP+S +GAEQ+
Sbjct:   17 LQLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTKRPGGPSNVLRDACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLESPPPSTNPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTLEELCLICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISMVGAEQV 696

The following BLAST results are available for this feature:

BLAST of TCONS_00050876-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050876-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VPS53	0.000e+0	56.18	Vacuolar protein sorting-associated protein 53 hom...	[more]

You are here

TCONS_00050876-protein (polypeptide) - C. hemisphaerica