TCONS_00050862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050862
Unique NameTCONS_00050862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050862 ID=TCONS_00050862|Name=TCONS_00050862|organism=Clytia hemisphaerica|type=transcript|length=151bp
tcaaagataaaaacaaaataaaaatattttctcagaaAATGCCTGAAAAC
CAAACCAAAGAAGAAACACATTTTGAAACCATACGAATCTCAGTACTACC
TTCTGGAAATGCTCAAATATTACCCGATGATAGCTCTCTAGAAGAAAAGC
N
Run BLAST on NCBI

transcript from alignment at scaffold_189:305190..305340

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050862 ID=TCONS_00050862|Name=TCONS_00050862|organism=Clytia hemisphaerica|type=transcript|length=151bp|location=Sequence derived from alignment at scaffold_189:305190..305340 (Clytia hemisphaerica)
NGCTTTTCTTCTAGAGAGCTATCATCGGGTAATATTTGAGCATTTCCAGA
AGGTAGTACTGAGATTCGTATGGTTTCAAAATGTGTTTCTTCTTTGGTTT
GGTTTTCAGGCATTttctgagaaaatatttttattttgtttttatctttg
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032232XLOC_032232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050862-exon-scaffold_189-1491911889:305190..305340TCONS_00050862-exon-scaffold_189-1491911889:305190..305340Clytia hemisphaericaexon
TCONS_00050862-exon-scaffold_189-1510915933:305190..305340TCONS_00050862-exon-scaffold_189-1510915933:305190..305340Clytia hemisphaericaexon
TCONS_00050862-exon-scaffold_189-1575043694:305190..305340TCONS_00050862-exon-scaffold_189-1575043694:305190..305340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:305190..305340 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top