TCONS_00050800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050800
Unique NameTCONS_00050800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050800 ID=TCONS_00050800|Name=TCONS_00050800|organism=Clytia hemisphaerica|type=transcript|length=617bp
TGTTTGTTTTAGTCACAATACAATGTTTACTCGAGTTTTAGTTTCAGGTA
ACATTATGATCCAGTATGAGTTCCTAACGCTTGGTGTTTGTTTGACCTTA
TTTGGCATTGGTGCTGGTGATTTTATTGAACGTCAAGAAATTGGTGACTA
CTTCGAAGGTGATGAATCATTCCAACGAGGTGTGAGTTGCAAATTGAACA
ACCCTACACAAGTAACTGGAGAAATATTTGGAGACAGTCAATGTATCAAT
GATTACAGGATAGAGTTTGAATGTGGCGCCATAGATTTGGATGGATCTAC
GACAATCAAATTCATTAGTTCACAGGATGTGAATAATACTATTTTCAAGT
TGACTGGATTAAGATTGTGTGACACATCAGATGACGTGGAATTCGTTTAC
CAACCATGGGGATATGGCGAATGGATAGACGTTGGAGATATTAGTAGTTC
ATTGGCTTTGATTGATCACAAACGAAAGGAGATCCAGTTTCAATTTCGAC
GTCTATGGTCAGGGCAACTCTTGAAAATTGGCATCAAATGTTATAAGAAA
GATGGTAGTAAGCGAGTTCTTTTGCCAGCGTCTTGTGCTGTGGTCAAACA
TGAAGGCTCGACTACAT
Run BLAST on NCBI

protein sequence of TCONS_00050800-protein

>TCONS_00050800-protein ID=TCONS_00050800-protein|Name=TCONS_00050800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
VCFSHNTMFTRVLVSGNIMIQYEFLTLGVCLTLFGIGAGDFIERQEIGDY
FEGDESFQRGVSCKLNNPTQVTGEIFGDSQCINDYRIEFECGAIDLDGST
TIKFISSQDVNNTIFKLTGLRLCDTSDDVEFVYQPWGYGEWIDVGDISSS
LALIDHKRKEIQFQFRRLWSGQLLKIGIKCYKKDGSKRVLLPASCAVVKH
EGSTT
Run BLAST on NCBI

transcript from alignment at scaffold_189:95695..98244+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050800 ID=TCONS_00050800|Name=TCONS_00050800|organism=Clytia hemisphaerica|type=transcript|length=2550bp|location=Sequence derived from alignment at scaffold_189:95695..98244+ (Clytia hemisphaerica)
TGTTTGTTTTAGTCACAATACAATGTTTACTCGAGTTTTAGGTAAAATGT
TATTATGAACTGTTATAAGACCCATTATGAGCTTGTAACGCTTGGTGTTT
GTATGACCTTGAAGGCATCACCCCCTTGGTTATAACTCGAGTCATTGTCC
TTGTCCCTGTCtcaaaacaatgttttttccaGTTTCAGGTAACATTATGA
TCCAGTATGAGTTCCTAACGCTTGGTGTTTGTTTGACCTTATTTGGCATT
GGTGCTGGTGATTTTATTGAACGTCAAGAAATTGGTGACTACTTCGAAGG
TGATGAATCATTCCAACGAGGTGTGAGTTGCAAATTGAACAACCCTACAC
AAGTAACTGGAGAAATATTTGGAGACAGTCAATGTATCAATGATTACAGG
ATAGAGTTTGGTAagaacatgttttttataagcataacgcttataagcat
acgaaggctcagatttgcagatttcctaagcatatACCAGCCTGAATTTT
TTATCATGTCAATTTTTTCTGTTCAAAAATGTTTGGAACTGTGCAAGTAA
AAGAAGACATTCCACGACTAGCcaccaataattttttcaaaaatggttat
tttgcaaaatgccaagtttctcttttttaatttgtcataattgtctagGT
TGCGCaggttttgagtgtatttttaagcaatttagagctcaaattttcaa
aatcccccccccctggttggccctcgcggtgtcactaaacttcagccccc
tcccccccaatatgaaaatgcttcctacggcactgagcatatgctatgcc
tggatgctttaaAAGCTTAAGTAAGCATAATCGAtggttataaaaaaaaa
catgttcatGGTGAGGCACAAAAAGGTTTCGCTCTTACAGGTATATTTTC
TCGAggtctaaaaattttaaaagaaaatacttttccattagaaaaaagaa
agtgaaacttaaattttgatgagcCATTTATTAGATTTGGTTctatagat
caaaagttatgtttaaGAATGAAGACTTTCTTTCAGAAAGATCtcgaaaa
tgttaaaaatcaacCGATTAAATTTGTATTTAAAATTGACAATCGCAATA
AGCCTTCTGCATAATTATCAGCATTTGATAGTAGTTAAACACACAAATTT
GGAAACTTTACTGTCGAAAAGGTTTAAAATCATCATCAGAtcattttaat
ttgtttttatcgAACTTTTCTTCAGATTTTCAGTTGCAGCATGGTtatag
actggataaagtcaaTGTAAAGATGGATATCGAAACCatgaatgggctct
tccagaaaaaatccgttcatggggggtggaggatatattatttttttcat
gaattacccctggacattttgatttttaaccccctggacaCGGGTTATAC
CCCTGGACAAACATCAAATCAACCCCGTGGACACAAAaaattaccccctg
gacattgcaattttttggcattttttcaatacccctggacaattcatcct
ccaccccccatgaacggattttttctggaagagcccaatatgaTGAATTT
GACCAGCTATTTTggcattttccaaaaaattcttCCTAGCATTgggaaat
ttcttttcataaaaaaaatcaccaCCAAAGTGACCAGCACAGcaaattat
ctttttttaacggtcaaatcaaaaacatgataTATCCTTTAATCAGATTG
gttgattttcaacgttttttttttttctgaaattgaaaataagtttttta
gTCATTTAAACACAACTTTTGATCTATAATGAACCAATTTAATAAATAAc
gcatcaaaatttaagtttatcttatctttcttctttcgtaTGAACATTCT
TAGAAGCTTAATTATAAAAGCTTTAATTCTTCTCAGAATGTGGCGCCATA
GATTTGGATGGATCTACGACAATCAAATTCATTAGTTCACAGGATGTGAA
TAATACTATTTTCAAGTTGACTGGATTAAGATTGTGTGACACATCAGATG
ACGTGGAATTCGTTTACCAACCATGGGGATATGGCGAATGGATAGACGTT
GGAGATATTAGTAGTTCATTGGCTTTGATTGATCACAAACGAAAGGTTTG
TTGATTTTAATTAGATaatgactttcaaaaaaaattcaattgttGATCAC
TTAGCAGATACCTCTTTTTTGACGATATTCAAATGTGGATCAATTTACGC
AAATTACGCgagtttttccgaaaattcgagaaatttaatgaaaatcaaag
aaattaattgaaaaagggacctcaaattttaataaacggtaGAGCCTAAT
GACCGGGGGTTTATTAGACACCTGAGAGTATTAAGCTTTATACAATCTGT
CTTTTAAATACCTTTGAGATACCACGGATAACTTATTCTACGGTTCTTGA
TTTTACAACAGGAGATCCAGTTTCAATTTCGACGTCTATGGTCAGGGCAA
CTCTTGAAAATTGGCATCAAATGTTATAAGAAAGATGGTAGTAAGCGAGT
TCTTTTGCCAGCGTCTTGTGCTGTGGTCAAACATGAAGGCTCGACTACAT

Coding sequence (CDS) from alignment at scaffold_189:95695..98244+

>TCONS_00050800 ID=TCONS_00050800|Name=TCONS_00050800|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_189:95695..98244+ (Clytia hemisphaerica)
GTTTGTTTTAGTCACAATACAATGTTTACTCGAGTTTTAGTTTCAGGTAA
CATTATGATCCAGTATGAGTTCCTAACGCTTGGTGTTTGTTTGACCTTAT
TTGGCATTGGTGCTGGTGATTTTATTGAACGTCAAGAAATTGGTGACTAC
TTCGAAGGTGATGAATCATTCCAACGAGGTGTGAGTTGCAAATTGAACAA
CCCTACACAAGTAACTGGAGAAATATTTGGAGACAGTCAATGTATCAATG
ATTACAGGATAGAGTTTGAATGTGGCGCCATAGATTTGGATGGATCTACG
ACAATCAAATTCATTAGTTCACAGGATGTGAATAATACTATTTTCAAGTT
GACTGGATTAAGATTGTGTGACACATCAGATGACGTGGAATTCGTTTACC
AACCATGGGGATATGGCGAATGGATAGACGTTGGAGATATTAGTAGTTCA
TTGGCTTTGATTGATCACAAACGAAAGGAGATCCAGTTTCAATTTCGACG
TCTATGGTCAGGGCAACTCTTGAAAATTGGCATCAAATGTTATAAGAAAG
ATGGTAGTAAGCGAGTTCTTTTGCCAGCGTCTTGTGCTGTGGTCAAACAT
GAAGGCTCGACTACAGTTTGTTTTAGTCACAATACAATGTTTACTCGAGT
TTTAGTTTCAGGTAACATTATGATCCAGTATGAGTTCCTAACGCTTGGTG
TTTGTTTGACCTTATTTGGCATTGGTGCTGGTGATTTTATTGAACGTCAA
GAAATTGGTGACTACTTCGAAGGTGATGAATCATTCCAACGAGGTGTGAG
TTGCAAATTGAACAACCCTACACAAGTAACTGGAGAAATATTTGGAGACA
GTCAATGTATCAATGATTACAGGATAGAGTTTGAATGTGGCGCCATAGAT
TTGGATGGATCTACGACAATCAAATTCATTAGTTCACAGGATGTGAATAA
TACTATTTTCAAGTTGACTGGATTAAGATTGTGTGACACATCAGATGACG
TGGAATTCGTTTACCAACCATGGGGATATGGCGAATGGATAGACGTTGGA
GATATTAGTAGTTCATTGGCTTTGATTGATCACAAACGAAAGGAGATCCA
GTTTCAATTTCGACGTCTATGGTCAGGGCAACTCTTGAAAATTGGCATCA
AATGTTATAAGAAAGATGGTAGTAAGCGAGTTCTTTTGCCAGCGTCTTGT
GCTGTGGTCAAACATGAAGGCTCGACTACAGTTTGTTTTAGTCACAATAC
AATGTTTACTCGAGTTTTAGTTTCAGGTAACATTATGATCCAGTATGAGT
TCCTAACGCTTGGTGTTTGTTTGACCTTATTTGGCATTGGTGCTGGTGAT
TTTATTGAACGTCAAGAAATTGGTGACTACTTCGAAGGTGATGAATCATT
CCAACGAGGTGTGAGTTGCAAATTGAACAACCCTACACAAGTAACTGGAG
AAATATTTGGAGACAGTCAATGTATCAATGATTACAGGATAGAGTTTGAA
TGTGGCGCCATAGATTTGGATGGATCTACGACAATCAAATTCATTAGTTC
ACAGGATGTGAATAATACTATTTTCAAGTTGACTGGATTAAGATTGTGTG
ACACATCAGATGACGTGGAATTCGTTTACCAACCATGGGGATATGGCGAA
TGGATAGACGTTGGAGATATTAGTAGTTCATTGGCTTTGATTGATCACAA
ACGAAAGGAGATCCAGTTTCAATTTCGACGTCTATGGTCAGGGCAACTCT
TGAAAATTGGCATCAAATGTTATAAGAAAGATGGTAGTAAGCGAGTTCTT
TTGCCAGCGTCTTGTGCTGTGGTCAAACATGAAGGCTCGACTACAGTTTG
TTTTAGTCACAATACAATGTTTACTCGAGTTTTAGTTTCAGGTAACATTA
TGATCCAGTATGAGTTCCTAACGCTTGGTGTTTGTTTGACCTTATTTGGC
ATTGGTGCTGGTGATTTTATTGAACGTCAAGAAATTGGTGACTACTTCGA
AGGTGATGAATCATTCCAACGAGGTGTGAGTTGCAAATTGAACAACCCTA
CACAAGTAACTGGAGAAATATTTGGAGACAGTCAATGTATCAATGATTAC
AGGATAGAGTTTGAATGTGGCGCCATAGATTTGGATGGATCTACGACAAT
CAAATTCATTAGTTCACAGGATGTGAATAATACTATTTTCAAGTTGACTG
GATTAAGATTGTGTGACACATCAGATGACGTGGAATTCGTTTACCAACCA
TGGGGATATGGCGAATGGATAGACGTTGGAGATATTAGTAGTTCATTGGC
TTTGATTGATCACAAACGAAAGGAGATCCAGTTTCAATTTCGACGTCTAT
GGTCAGGGCAACTCTTGAAAATTGGCATCAAATGTTATAAGAAAGATGGT
AGTAAGCGAGTTCTTTTGCCAGCGTCTTGTGCTGTGGTCAAACATGAAGG
CTCGACTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032181XLOC_032181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050800-exon-scaffold_189-1491911889:95695..95735TCONS_00050800-exon-scaffold_189-1491911889:95695..95735Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1510915933:95695..95735TCONS_00050800-exon-scaffold_189-1510915933:95695..95735Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1575043694:95695..95735TCONS_00050800-exon-scaffold_189-1575043694:95695..95735Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1491911889:95877..96104TCONS_00050800-exon-scaffold_189-1491911889:95877..96104Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1510915933:95877..96104TCONS_00050800-exon-scaffold_189-1510915933:95877..96104Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1575043694:95877..96104TCONS_00050800-exon-scaffold_189-1575043694:95877..96104Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1491911889:97581..97789TCONS_00050800-exon-scaffold_189-1491911889:97581..97789Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1510915933:97581..97789TCONS_00050800-exon-scaffold_189-1510915933:97581..97789Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1575043694:97581..97789TCONS_00050800-exon-scaffold_189-1575043694:97581..97789Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1491911889:98106..98244TCONS_00050800-exon-scaffold_189-1491911889:98106..98244Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1510915933:98106..98244TCONS_00050800-exon-scaffold_189-1510915933:98106..98244Clytia hemisphaericaexon
TCONS_00050800-exon-scaffold_189-1575043694:98106..98244TCONS_00050800-exon-scaffold_189-1575043694:98106..98244Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050800-proteinTCONS_00050800-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:95695..98244 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173911	0	0.0984552	0	0.234528	0	0	0.104661	0	0.181527	0	0.0579117	2.79121	3.11374	0.0987521	0	1.37557	2.59927	9.02596	12.1607	4.05424	4.54687	2.66399	1.80229	6.36192	6.22232	1.77515	1.98128	0.579081	0.63639
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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