TCONS_00050797 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050797
Unique Name	TCONS_00050797
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1325

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_189:59643..64038+
coding sequence from alignment at scaffold_189:59643..64038+

transcript sequence

>TCONS_00050797 ID=TCONS_00050797|Name=TCONS_00050797|organism=Clytia hemisphaerica|type=transcript|length=1325bp
CGTAAAGTCTTCCTTGATATCAACAACCACTGGAGGCGGGTTGACAAAGC
TGCTGTCAAAGAAACAACAGGCCTATATTGTCAATTCAGAGATTTCCGAT
TATTTCATGCGATTTGCGAAAAACGACGAGAACAGTAACGGCGAAATCGA
AAATTTGTGCAAGCTCTATAGTGGCGAGTCAATAACAATAAATTACGCCA
CCGAAGATCAATGAAGTATCAAAAGTGACATACCATTTTGCATTTTGGGG
TCTACGCAGTTAAAGAATGCATCCATGATGTTGGCTACAATTGACCGTAG
CGATGGGTTCTGGGATAGGTTTTTATTCAGCGTTCCACCTCCGTTCAGAC
CATGTCCTGATGATCAATTAAAAGCGACCCAAACATTCAATCAAGAATTT
CCATTCACGATGAAAGATATATATGAAAAACTGGACAGTTTACTTGACNC
CCAAACATTCAATCAAGAATTTCCATACACAATGAAAGATATATATGAAA
AACTGGACAGTTTACTTGACGAAGAAAATCCCCCGATGTTTTATTTGGCA
CATAATGCTGCAGAGTATGTCAAAAAGATGAATACAGATGTAATATTAGG
AGCCAACAGAAAAATGAGAACAGCAATTCcagtgaaaaattcaaaattta
ctgaCCAGATTCCGAAAATTGCCGTTGCGCTGCAAGTTTTGGATACATTA
TTCTCTATCATGGATAACAACAATCAAACATTGACAGAGGAAATAACTCT
TGACAAAATCATCCATGCAAGGAATATAATCCACCATATAGCTGATCAAA
CATCAGTTCTCAAAGAGTTCGTGAAATCTTCAATTCCAATCCGACAAATC
GGCAATAGTTTTGTTCCAACCAAGGAAAATCTTTGCAGAGTGATTCTGGC
TTCTCCGGGTCCAATCGTTACCCAAAGGTCAGTACGAATCTGCACCACCA
AAACTATCCGCCAACATATAATGACGGCTGAATTCATTAATTGCTGCAAG
TATTTGATGTCGGAGGGTTATGGAACGTATTCCAGTATAAAAAATGGCCA
CCGATATTCGtacattttcctcaaaaagtCGCCTGAAATGATCAACAACT
TTTCATTGATTGAACAAGAGTTATATGTGAGAAAATTCGAGCAAAAGATA
AATGACAGTATCAACAATGTAATTATTGAACATTGTTCTACTTTAATCta
ataataatttgattgaaatattgcagCAATGGCCGTATACTGAGTAATGT
GGGAGTTCTTTCTTTTAAATACTTTTGGACCAATTCTTTTGACATTTTGT
AATTTGTGTTTCCAACCAAATGCAC

Run BLAST on NCBI

protein sequence of TCONS_00050797-protein

>TCONS_00050797-protein ID=TCONS_00050797-protein|Name=TCONS_00050797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MMLATIDRSDGFWDRFLFSVPPPFRPCPDDQLKATQTFNQEFPFTMKDIY
EKLDSLLDXQTFNQEFPYTMKDIYEKLDSLLDEENPPMFYLAHNAAEYVK
KMNTDVILGANRKMRTAIPVKNSKFTDQIPKIAVALQVLDTLFSIMDNNN
QTLTEEITLDKIIHARNIIHHIADQTSVLKEFVKSSIPIRQIGNSFVPTK
ENLCRVILASPGPIVTQRSVRICTTKTIRQHIMTAEFINCCKYLMSEGYG
TYSSIKNGHRYSYIFLKKSPEMINNFSLIEQELYVRKFEQKINDSINNVI
IEHCSTLI

Run BLAST on NCBI

transcript from alignment at scaffold_189:59643..64038+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050797 ID=TCONS_00050797|Name=TCONS_00050797|organism=Clytia hemisphaerica|type=transcript|length=4396bp|location=Sequence derived from alignment at scaffold_189:59643..64038+ (Clytia hemisphaerica)
CGTAAAGTCTTCCTTGATATCAACAACCACTGGAGGCGGGTTGACAAAGC
TGCTGTCAAAGAAACAACAGGCCTATATTGTCAATTCAGAGATTTCCGAT
TATTTCATGCGATTTGCGAAAAACGACGAGAACAGTAACGGTAATTTTTT
CACATTACTTACATTACTCTTTCTAAAATTCTCTTCACATAGTTACATAT
CACTTTTTTAGCTCCCTTTAGATTTGATGATATCTGAATTTTACAAACCT
GATtctaaaagatttaaaaagGAGGCTAAAGGTGTTTATCTTTATGTATC
TAATTCACAGGCGAAATCGAAAATTTGTGCAAGCTCTATAGTGGCGAGTC
AATAACAATAAATTACGCCACCGAAGATCAATGAAGTATCAAAAGTGACA
TACCATTTTGCATTTTGGGTAATTACTTgttacattttaaattttatacg
AACGTCCGAACTAttagtttttgtatttttcctaTAATGTAATCTCAACA
TCGTTTTTATCCCTTATATTTGGTTTCTCCTTCTCCATTTTTTGTGCAAT
TTATAGGTGCCTAATTCAAAATTTCACTCTGACCTTTTCCACCCATAATC
AAAATGCTTTCACTGTTTATAATCACAACAGGGAAAAACTGTGAGCNTCA
CTTTGACTATTTCCACCCAAAATGCTTTCACTGTTTAGAATCACAACAGG
GCAAAACTGTGAGTAATTAACAATGAAACATTAATTTTATACCATAGTGG
GGAATGCCGATTACTTCATATATAAATAAAGTCTTCTCTATTTCAGGGTC
TACGCAGTTAAAGAATGCATCCATGATGTTGGCTACAATTGACCGTAGCG
ATGGGTTCTGGGATAGGTTTTTATTCAGCGTTCCACCTCCGTTCAGACCA
TGTCCTGATGATCAATTAAAAGCGACCCAAACATTCAATCAAGAATTTCC
ATTCACGATGAAAGATATATATGAAAAACTGGACAGTTTACTTGACNCCC
AAACATTCAATCAAGAATTTCCATACACAATGAAAGATATATATGAAAAA
CTGGACAGTTTACTTGACGAAGAAAATCCCCCGATGTTTTATTTGGCACA
TAATGCTGCAGAGTAAGTTCGGTTTCATATATTTTAACTATCAACCATAT
CTGTTTTTCTATAGCGTTTTGAAGCTTTAAGTACGGACTTTATTTTTAAA
AGGGGAAATTTTCTTTCTGAATTAAGCTTGTGGACCATCTCAAGTCAAAA
CCCCCAAAAATCgcctaactttttcaaaagaacttttttgactttaacaa
aggataaataaatgaggttaacttatttttatttgNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATACATTATAGAGGTTAAGTGTTGAATTTAAAGAGATATTC
TTGGTCAAAGTAGGGTTAAAAATTTGAGGTTAACTTGCACTGAGGTTAAC
CTAATGATCCTTAAAGATGGACCAAAATTAGTATGAAATGTGAGGTTAAA
GTAAAAATAAGTGATTGGGTTTTACTATTTAATGATTGGGCAACAAGGTA
GGCTAGAAAAATGAGGTTAATATTTCAagtagggtgtaaaatttgaggtt
ATTTCACAAAAACACCCTAATTGTAAGGTTAACAATGATATTTCAGTCTA
ATTTTGGATATCAGACAAACAGTAGCCTATTATCAAAAACAACTaaacat
gaaaaattatattttggtatAAAAAGTGAGGTTAACTGGTATATTAACTT
GAGAGACACAAGTACCTGAGAAAGGGGTTGATTTTAGGCTTTCAGATAAC
CTACATAGAAAGGGAAAATTGTGTGATAAAAATAGTGGGATTCATTATTC
AATGGTTGAGGAACAAGGTAAGGTAGAAAAAATGAGGTTAATATCTTAGT
TTGGGTACCAAAAGTGATGTTATTTGTGAATTGAGCTTATAgggtttttt
aattctttgttgTATACTTTAATGACTTATAAATCCGTTTTTGATATCAA
TACTGAGCTTAAAAGTAAAGCTTAAGTCTTAATTAAGTCTGAATTAAAAA
TCTTTGAGGTTAACTTTTTATCGTAGTATACCTTAAACGTTTTTCGTTCA
GTTGTTTAAGTTTGAAGGTATATAAGCTAAAACATCCTACTTTTTCAGGT
TGTTTAACCTCATTTTAAGAACCTTTTTGgtctatttcatatttttttag
cTTACAAGttactttatgaaaacttttaaaaagtaattttgttcATGTAG
CTTTAATAGAATAGAACTATTTAGATCAATTAGAGAAGCAAATTTCTCAC
ATTCCTTAACATAGAGTTCTAATTTTAACCTCAATTTTTAACCCTACGTT
AGAGCAAAGATTGTCAATTTCTTAAAAACCCTTTTGATCTCAGCTTCTAG
TATCATTTTACTTTTGTCCCATAACTTAATACACTGGCTAGCAGAAGATA
TGGTTAAGAATGTGAGGTTACTTGTTACCATTTTTTTAACCTCATGAATT
GAACCTTTCTTGTGGGAAATCTCTAACCTTTTTCAAACAAGCTTGATATT
TGAAGCCTTTTTGATGACTCCCTAATAATTTTTTCCCCAATAGTTCAATA
AGCATCTCTATATTTTGAGGTTAACAAAAGTCTATAAATTGTCATTATTA
ACCTCAAATAACAaacctttttcaagtttttttttcatttttgggtaTAA
GCCATCAATTATGACCAAccctcaaaatttcaacctttttagataaaaaa
tgaagattatatGGCCAATAATgtaaattttccactttttcctcaaaaaa
attaactttttcttaggCGACATTGATTTGAGATTGTCcttgttttaaaa
ttatagTGCGTCTTCCAGTacaaattgagaattttttaaatgtaaattca
aattttttggaaccTACTTTACCTTAACCTAAACCTTCTTTACCTACATT
TAAATATCTAATTTTAATTTGAATATTACTGCCATGTCCTTTATATGCGA
GTGATTGAAATACTCGGAATAATACACAAAGGTATCTAACCTCTTTGACC
TACGTTTACAATTTGAGAATAATTGCaatatcattttgaaaatataataa
cAACACAAACTCTTTTCCGTGCGTATGCAAATCACGAACCTTCGAAACCT
TCATTACCtacatttaaaataaaattacgTCACAATTACTTTTTCTTCCA
ACAGGTATGTCAAAAAGATGAATACAGATGTAATATTAGGAGCCAACAGA
AAAATGAGAACAGCAATTCcagtgaaaaattcaaaatttactgaCCAGAT
TCCGAAAATTGCCGTTGCGCTGCAAGTTTTGGATACATTATTCTCTATCA
TGGATAACAACAATCAAACATTGACAGAGGAAATAACTCTTGACAAAATC
ATCCATGCAAGGAATATAATCCACCATATAGCTGATCAAACATCAGTTCT
CAAAGAGGTACAATTTTGATATTGACTTATTATGGCATTAATTCTAACCT
TGAAATCAAAGGTTCGAAGTACCTAGTCACTTTCCAAGTGCTAATGTCAT
ACATGATTTGTTTTGACCCTGGTTTGGCGCGAATTAAACACTGATAACTA
ATATAAttaataaaatcaatcaatcaattgcTTTATAAAACCACGGATGA
GGGTTGCTTAGAAATTAGTTTTATTGGAAGAGACTGTACCTTCTTTTTCA
TATTATTATCAATGATTGTTTTCTTTTATTAATTTCAGTTCGTGAAATCT
TCAATTCCAATCCGACAAATCGGCAATAGTTTTGTTCCAACCAAGGAAAA
TCTTTGCAGAGTGATTCTGGCTTCTCCGGGTCCAATCGTTACCCAAAGGT
CAGTACGAATCTGCACCACCAAAACTATCCGCCAACATATAATGACGGCT
GAATTCATTAATTGCTGCAAGTATTTGATGTCGGAGGGTTATGGAACGTA
TTCCAGTATAAAAAATGGCCACCGATATTCGtacattttcctcaaaaagt
CGCCTGAAATGATCAACAACTTTTCATTGATTGAACAAGAGTTATATGTG
AGAAAATTCGAGCAAAAGATAAATGACAGTATCAACAATGTAATTATTGA
ACATTGTTCTACTTTAATCtaataataatttgattgaaatattgcagCAA
TGGCCGTATACTGAGTAATGTGGGAGTTCTTTCTTTTAAATACTTTTGGA
CCAATTCTTTTGACATTTTGTAATTTGTGTTTCCAACCAAATGCAC

Coding sequence (CDS) from alignment at scaffold_189:59643..64038+

>TCONS_00050797 ID=TCONS_00050797|Name=TCONS_00050797|organism=Clytia hemisphaerica|type=CDS|length=2781bp|location=Sequence derived from alignment at scaffold_189:59643..64038+ (Clytia hemisphaerica)
ATGATGTTGGCTACAATTGACCGTAGCGATGGGTTCTGGGATAGGTTTTT
ATTCAGCGTTCCACCTCCGTTCAGACCATGTCCTGATGATCAATTAAAAG
CGACCCAAACATTCAATCAAGAATTTCCATTCACGATGAAAGATATATAT
GAAAAACTGGACAGTTTACTTGACNCCCAAACATTCAATCAAGAATTTCC
ATACACAATGAAAGATATATATGAAAAACTGGACAGTTTACTTGACGAAG
AAAATCCCCCGATGTTTTATTTGGCACATAATGCTGCAGAGTATGTCAAA
AAGATGAATACAGATGTAATATTAGGAGCCAACAGAAAAATGAGAACAGC
AATTCcagtgaaaaattcaaaatttactgaCCAGATTCCGAAAATTGCCG
TTGCGCTGCAAGTTTTGGATACATTATTCTCTATCATGGATAACAACAAT
CAAACATTGACAGAGGAAATAACTCTTGACAAAATCATCCATGCAAGGAA
TATAATCCACCATATAGCTGATCAAACATCAGTTCTCAAAGAGTTCGTGA
AATCTTCAATTCCAATCCGACAAATCGGCAATAGTTTTGTTCCAACCAAG
GAAAATCTTTGCAGAGTGATTCTGGCTTCTCCGGGTCCAATCGTTACCCA
AAGGTCAGTACGAATCTGCACCACCAAAACTATCCGCCAACATATAATGA
CGGCTGAATTCATTAATTGCTGCAAGTATTTGATGTCGGAGGGTTATGGA
ACGTATTCCAGTATAAAAAATGGCCACCGATATTCGtacattttcctcaa
aaagtCGCCTGAAATGATCAACAACTTTTCATTGATTGAACAAGAGTTAT
ATGTGAGAAAATTCGAGCAAAAGATAAATGACAGTATCAACAATGTAATT
ATTGAACATTGTTCTACTTTAATCtaaATGATGTTGGCTACAATTGACCG
TAGCGATGGGTTCTGGGATAGGTTTTTATTCAGCGTTCCACCTCCGTTCA
GACCATGTCCTGATGATCAATTAAAAGCGACCCAAACATTCAATCAAGAA
TTTCCATTCACGATGAAAGATATATATGAAAAACTGGACAGTTTACTTGA
CNCCCAAACATTCAATCAAGAATTTCCATACACAATGAAAGATATATATG
AAAAACTGGACAGTTTACTTGACGAAGAAAATCCCCCGATGTTTTATTTG
GCACATAATGCTGCAGAGTATGTCAAAAAGATGAATACAGATGTAATATT
AGGAGCCAACAGAAAAATGAGAACAGCAATTCcagtgaaaaattcaaaat
ttactgaCCAGATTCCGAAAATTGCCGTTGCGCTGCAAGTTTTGGATACA
TTATTCTCTATCATGGATAACAACAATCAAACATTGACAGAGGAAATAAC
TCTTGACAAAATCATCCATGCAAGGAATATAATCCACCATATAGCTGATC
AAACATCAGTTCTCAAAGAGTTCGTGAAATCTTCAATTCCAATCCGACAA
ATCGGCAATAGTTTTGTTCCAACCAAGGAAAATCTTTGCAGAGTGATTCT
GGCTTCTCCGGGTCCAATCGTTACCCAAAGGTCAGTACGAATCTGCACCA
CCAAAACTATCCGCCAACATATAATGACGGCTGAATTCATTAATTGCTGC
AAGTATTTGATGTCGGAGGGTTATGGAACGTATTCCAGTATAAAAAATGG
CCACCGATATTCGtacattttcctcaaaaagtCGCCTGAAATGATCAACA
ACTTTTCATTGATTGAACAAGAGTTATATGTGAGAAAATTCGAGCAAAAG
ATAAATGACAGTATCAACAATGTAATTATTGAACATTGTTCTACTTTAAT
CtaaATGATGTTGGCTACAATTGACCGTAGCGATGGGTTCTGGGATAGGT
TTTTATTCAGCGTTCCACCTCCGTTCAGACCATGTCCTGATGATCAATTA
AAAGCGACCCAAACATTCAATCAAGAATTTCCATTCACGATGAAAGATAT
ATATGAAAAACTGGACAGTTTACTTGACNCCCAAACATTCAATCAAGAAT
TTCCATACACAATGAAAGATATATATGAAAAACTGGACAGTTTACTTGAC
GAAGAAAATCCCCCGATGTTTTATTTGGCACATAATGCTGCAGAGTATGT
CAAAAAGATGAATACAGATGTAATATTAGGAGCCAACAGAAAAATGAGAA
CAGCAATTCcagtgaaaaattcaaaatttactgaCCAGATTCCGAAAATT
GCCGTTGCGCTGCAAGTTTTGGATACATTATTCTCTATCATGGATAACAA
CAATCAAACATTGACAGAGGAAATAACTCTTGACAAAATCATCCATGCAA
GGAATATAATCCACCATATAGCTGATCAAACATCAGTTCTCAAAGAGTTC
GTGAAATCTTCAATTCCAATCCGACAAATCGGCAATAGTTTTGTTCCAAC
CAAGGAAAATCTTTGCAGAGTGATTCTGGCTTCTCCGGGTCCAATCGTTA
CCCAAAGGTCAGTACGAATCTGCACCACCAAAACTATCCGCCAACATATA
ATGACGGCTGAATTCATTAATTGCTGCAAGTATTTGATGTCGGAGGGTTA
TGGAACGTATTCCAGTATAAAAAATGGCCACCGATATTCGtacattttcc
tcaaaaagtCGCCTGAAATGATCAACAACTTTTCATTGATTGAACAAGAG
TTATATGTGAGAAAATTCGAGCAAAAGATAAATGACAGTATCAACAATGT
AATTATTGAACATTGTTCTACTTTAATCtaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032178	XLOC_032178	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00050797-protein	TCONS_00050797-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_189	supercontig	scaffold_189:59643..64038 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0459925	0.182379	0.0359944	0.0352149	1.7342	0.942694	2.94434	2.58111	3.05852	1.95587	2.51874	2.82872	1.61567	1.9835	0.516849	1.24497	0.971111	0.580842	1.12753	0.519889	0.385822	0.481957	0.343816	0.436628	2.73258	3.01794	0.350424	0.382642	0.454897	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00050797 vs. Swiss-Prot (Human)

BLAST of TCONS_00050797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00050797 (transcript) - C. hemisphaerica