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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050789 ID=TCONS_00050789|Name=TCONS_00050789|organism=Clytia hemisphaerica|type=transcript|length=1606bp
GCAAAAACGAAAGTGCAGgggaaagtaataaaaatggaaGACTCGCACGA
AGATAAGGTTCGCATTAACAAGAACTCTATCAGGATGGCTGGCCTGGAAT
CCATTCGAAACTTTTTGAAGATGAGTTATGAAGGTGTGGACTTTCAATTG
GCTGGCAATGGTGGTTTTGATTGCTACGATTACCTGACCATCCAATCACG
TGTCACTGACACCTGTGTCTTTGTAATGCTCGTTTTCATTTTGATCTTTC
CAAAGATTATTCGATCATTGACATTACCTAAGGAATGGGAAATCGCAAAG
TTCTGTCAGAAGCCCACCGCTCAAAGAATTTGTGGCTTTCGCAAATTTCT
TCTGATCGCGCTTTCTATTATTTTGGGCATTGAGCTTGGTTACAAGATAT
CAGAACGCTCTTGGATTTTCCTTCTCAACCCTTGTCACGTCATCACAATT
TTACagATTTACCTTCTAAGTGCTGAACCGGGGAGGATGTGCACTGCAGT
TTTCAGATTGCATATTCATTTGTTATTTGGGGCTTTTCTGGCATTTGTGT
TTCCAGTACTCAACACACGTGTGcgtcACGGAGAGCAGATGATTTATTAC
TTACAACATTTCATGATAACATTGGTGGTTCCACCTTATCTGATACATAC
TGGAGGTGCATATAGATGTGAACCATTGCGAGATTTCAACTGGGTATTAC
TAGCAGTCGTTATGTTTGGTTTCTATATGTATTTCATTTTACAAGCCACG
AGTATGTACACATTGGTGAACCTCAACAACATGTTATGTCCTGCTGTCTC
CGATCCTTTTGCAGGGAGAAATTATCGATGGTTCGCAATGTTCCACCAGA
CTGCGCTCATCCTCATCTTCGGTAAAACTTATACTGCCATATTGTCTCTC
TTCCAAAGATTCCTGGCTTACTGCAAATTCAAAAGTAGTGACCCAAGGAG
GAAATTAACTAAGCATGTCGATAAAGATGAATAATGAAATTGTGATTTTA
TTTgtatttcgaaaaattgtatttttgtagcATTTTCATATCGGtcgttt
tcattaaaatatgtTAGGAATATTTCACATGTTACTTATTTTTCGGGCCA
TATTTTGAAAACTCTGAAATAGGTAACTCTGAAGAAAGAAAACCCATTTC
CCTGACCCAGCTGAATCGATCATAAGCCCTTGGCCCTTCATTTTTCGAAC
ATCCTTTCTCAAAACATTACTACACCAAAGGCTGTCAGGCGTTTTAACCA
CCCTCTAGTGGACTTAATCAACGATCTAAACTGATGGGTGATGTATTTAC
CCTTTAGAAACTTTGAGCATTTTAGATGATTTCACTATTTGAGTCCGAAA
CCTTTTTTCTAAGCCGTTACTTTAATGGgttaaactttcgcggggattaa
atttcgcgtttgggcctatccgcgaagttcaaaaatttcgcggggactta
atttcgcgggtggcactgtTGGGTGgtaatattttcacgattttttggct
tttactGCCAAATCATGCACGTTGGTTGTTtaaatacacattattagcgc
ttctttgatgcaagtaaccattcaaatagtatttatctgacatattttga
gttttg Run BLAST on NCBI protein sequence of TCONS_00050789-protein >TCONS_00050789-protein ID=TCONS_00050789-protein|Name=TCONS_00050789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
AKTKVQGKVIKMEDSHEDKVRINKNSIRMAGLESIRNFLKMSYEGVDFQL
AGNGGFDCYDYLTIQSRVTDTCVFVMLVFILIFPKIIRSLTLPKEWEIAK
FCQKPTAQRICGFRKFLLIALSIILGIELGYKISERSWIFLLNPCHVITI
LQIYLLSAEPGRMCTAVFRLHIHLLFGAFLAFVFPVLNTRVRHGEQMIYY
LQHFMITLVVPPYLIHTGGAYRCEPLRDFNWVLLAVVMFGFYMYFILQAT
SMYTLVNLNNMLCPAVSDPFAGRNYRWFAMFHQTALILIFGKTYTAILSL
FQRFLAYCKFKSSDPRRKLTKHVDKDE Run BLAST on NCBI transcript from alignment at scaffold_187:46600..55294+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050789 ID=TCONS_00050789|Name=TCONS_00050789|organism=Clytia hemisphaerica|type=transcript|length=8695bp|location=Sequence derived from alignment at scaffold_187:46600..55294+ (Clytia hemisphaerica)
GCAAAAACGAAAGTGCAGgggaaagtaataaaaatggaaGACTCGCACGA
AGATAAGTAAGTGGTATTTTTCGAgaaattttcgagaaattttctAGAAT
TCAAGTAATTCTTcaattagtttgttcttatttacgTATCAAAGCAGAAA
GTATTTTCAAACACCGTCTTTCTTTAGGGTTCGCATTAACAAGAACTCTA
TCAGGATGGCTGGCCTGGAATCCATTCGAAACTTTTTGAAGATGAGTTAT
GAAGGTGTGGACTTTCAATTGGCTGGCAATGGTGGTTTTGATTGCTACGA
TTACCTGACCATCCAATCACGTGTCACTGACACCTGTGTCTTTGTAATGC
TCGTTTTCATTTTGATCTTTCCAAAGATTATTCGATCATTGACATTACCT
AAGGAATGGGAAATCGCAAAGTTCTGTCAGAAGCCCACCGCTCAAAGAAT
TTGTGGCTTTCGCAAATTTCTTCTGATCGCGCTTTCTATTATTTTGGGCA
TTGAGCTTGGTTACAAGATATCAGAACGCTCTTGGATTTTCCTTCTCAAC
CCTTGTCACGTCATCACAATTTTACaggtgaaatttattttgtgtaCTAG
ACTTTTAGTAAGGGATCATTTGTTTTCATGCCAACCGGTCATTTTTGCCA
GCATTTCTATCAGAATATACAATTCAATAATGCAAACAGCTTCAGGTTTT
CTGATAGTGATAAACGATAACTTTTTTGTGATGATTTATTGCTCGATACT
CACCACGAAGTCAAAATTCTTTCAGATTTACCTTCTAAGTGCTGAACCGG
GGAGGATGTGCACTGCAGTTTTCAGGTAAGTGCCGAATTTTTCATAGGTT
TTGATATATTTAATACTGTATTGATGATTTGTGTCAGCTTGCCAGGTCAA
GCAATTTCAACTGACAAACAGGACCCCTCTGACGTTTTTacttaaatatt
ttttgctcaaattttgtatgGTGGCTCCTTTGACATATGAACTggatcat
ttttttccaaagtaCCCAACGTGTATTTTGCATACCGGCTCATATTTCCC
CTTTTGTTCGATTTGGCCCAAATTTCATATTCTATTTCAAATTTGTGCCt
gtgtttttttataacttGCTCCTTTCGGTAAAGCGCTCTTAAAGCACCAG
TTAGCCTTCAACATATAAGCaaactttttataaagaaattacCAGGTTAC
TCTATTTTTACTGTTTATAGATTGCATATTCATTTGTTATTTGGGGCTTT
TCTGGCATTTGTGTTTCCAGTACTCAACACACGTGTGGTAAGTCAACATT
TTCTAACAGTCAAAGTTTGCAACCTCTTATTGTGTGAACTTNGGTAAGTC
AACATTTTCTAACAGTCAAAGTTTGCGACCTCTTATTGTGTGAACTTTGA
TCGATGCTTTACAGGCCAAGGTTTACTGGCTTTCTCTGTGGTTAATCCTC
TTTATTAATTTACTAAATTACTtagtaaattattttttttctcacgacCT
TGTTTACAAAAAGCTAAGGTTTACTGGCCTTCTCTTAACCGCGGTGGTGG
TATGCAAAAAATATACTCGAAAACCCTTTACGACTCGTATGTAGATTTTA
GTAACGACCTCCCGTAGATCCTGCGTTTCAGAAAATCATTGAGAATTAGC
CAAGGGAAAGTCAGTAAACCTTGGCATGGTGCTTGTCCTGTATGTTCACA
GGtactgatttttgcaacattCGTTCCAAGATACTACTTTATGAATTGAG
GAAACATTAAAGACATTTGACTGAATGCAAAAAATAATAGAACTTTGGAA
ACTTCCTTTAAAGTTGTTTACGAATAATTGTGCAAAAGATTCCAAATATG
ATAAAAATCAGGGGGGATCAGTACTAAAATCTAGGACATCGTGatgttta
gtgacgtggtgaTATACCGTACcccaaaaaaacttaaaaatccttttagt
actatGGGGtactaaaattctaaaaaggtggTATTCGGactaaaatttga
gaattttttagtaaaaaaaattcagaaaagtggtattttagtacccatTT
ACCAAAATTTTTGGAGACATTCTCTTTGACACAGAGACATTTTGACACCC
AAGTTTGCTCTTCTCAGGATAAATTCTGTCTTCTTGGgaccatttttctc
aaaagtgcTGATTTGTTGAAcataattttttgcaaaaattgatACTTCAA
ACAACGATGTCTAATATATCAAGCAAAGATTAGAGAcacaaaaatatctg
aaaaagattcaaaaaatgatgaaaatcacTAATTTTAGTACAAGATGTAC
TAAGAAATTTCTTAACTTTCAGTCTGGATAccacctttttggtattttag
tgctCTGTGGTactaaaatgattttaaagttttttggggtataccaccac
gtcactaaacatCGTGATGTCCTAGATTTTAGTACGACCCCCCTGTCACc
acttttttggtattttagtgcgCTATGGTACTAAAAGGATTGTTAAGTTT
TATGGGTTTACCACCCCTGCGTTTACGagtattgaaataaatttattttg
tttacaCAACAAACTAGATCTTTatatattgacatttttgattttagcgt
cACGGAGAGCAGATGATTTATTACTTACAACATTTCATGATAACATTGGT
GGTTCCACCTTATCTGATACATACTGGAGGTATTTAAATTCGTTTAAATT
CGTTGCCTTTTCACAACCACTTATAGGAGACCAAACAACTTATTTCATGA
GGACGTTTGTTGTGTCATTCTCTCGTTCTTCCGTCTGTTAAatctattct
aaaaaaattgatagtcctatcttttttaaaaatttctcttGAGGGAAAAA
GATAAATGAAAAGCAATACCTCGTTGGAAAGATCATTTCGAGCGACTTGA
tataaaatttttaagaatgtcctgaaattttaaagacaggttttggtctt
gtagaagaaagcttcactttttcttcttcatttttcatcttcttttttca
tcttcattttcaaatattccaatgttctctaaaaagtggctgaatccgtt
ttttttccggaaaatcTTATTCTCCTTAAAATACGTATTCGTTTAAGGGG
AAAATCCCCTTTACCGTCTAAAGGGAAATCACTCTACAATATTTATTCAA
TCTTCTCCTATAATACGATACcgtaatgaccggttagtgaggggtAACCG
GTTGCAAGCTCGGTCGTTTTTTGACCTCGCGCAATATTTCTCAGAACAGC
CCTTTACCCAGAAAAAATAGCGAACAAAAGCGAAAagagatcaaaaattg
ttttaatttttgacttaaaaaatgaaaaacgagaCCTATGATGtgttcat
tttcttttgaaaaaactaaCGTCGCAATTTTCCTAACAACGGGCAACCTC
TGTGCAGTGTAGGCCCGTTCAGTTGTTGAGGTTGTTTGGGGGGCGTCACT
CTCTTTGTGAGAGTCTTTGCCCGTCGACATGCGAAAAGatccaattgcat
tgcgcaaaaagccgtgtagcccgcttcgagaAAGTAAACGGTTAAGAATA
TTAGATAATATTTCCTGATATACATCTATCTCATGATTGCAAAGAGTTAT
TAACTTGAAATGTAGATCAAGTTGTGGATAATGATAATTCAAATAAAACG
TTTATCATTTTGATCCAATTACCTGTTTAAATGGTATTTTGTAGACCTAT
TATAGGGTTAATTAGTCAATGGTAAAAACTATGATAACAGTTTTTGGAAT
TGGGTCGAATTAAATGAAAGTAACATCGACTAAAACTTAAACAGTTTGAA
TTGAAAAAGTGGCTCTAACAGATGTAAATCAAAAGGTCAAAGTCTCCTTC
TGCTAATCATCCTAGCTGTTCGCAAGAATAATTCTATTTTGGCTTCCGGG
TATGTCAGATATGATTTACTctctttgaaattttatttctcaactttatG
GCTTTTTAAAGAATGGAAGCtttattggaaagaagagaGATGGACCAAAG
CTCCGATGGGTCATTTATCGAATTTGATACATTACATCAAACACCATGCC
AGTTGTCCAGTAGTcctaattttcaaagaaaatgggCTGTAGATCACAAA
ATAGTTGTCCAAAATGCTAGAACTATTTAGACTACGAGCAATGAAGGCAT
TAACATATATTTCATGGAAGAATTTGGCCCTGTGTGAAATTTAAaagtta
tatattttttcaaaattcagattttttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
AGCCccattcatttgatttgaaaatcatgCTGAAATGACGTCGTTGCTAA
GCTGTTTTTGCCTCATTCACCTCCGCTGGTGCCTGGCAGAAACCAAAGTT
TGGaacttcttgaaaaatttaatttcaaaattgcttGAATCATGTTCAAA
TCTAAACCAGAAACTAGATATAAAGAAGGAATACAGAAAATTGATGGGTA
AAGAAAGACTAAGAGATCTTGGATATTTTGAGTGGCATCCACTTGGACTT
TTTGTTTCGAGCGCTGAGGAGGATAATATGCAAACACGAAGTCTGGATGA
CAAGAGACAAACCCCTTGCTTCACTTTAAAGTTTAAACAGTTTTAGAACT
ATTTACATCACTCATCATTCATCCACCCCACTGTatcctttttttaaatg
gccaaaaattttctaaattaaaattGTGAAATGTTGTTGAAATGTGGTAT
TAAACAGGTTTCATTTcagaaattgtaaaattgaaaaagataatGCACAC
ACATGATTTAGGTCTttgaaatactgtaatttattgctttgtgaaaattt
aaaagactgATCAAATTGTGtacacttttatcaaattaatttgattaaat
tccACAGCATGGAGATTTATCctgtaaacatttaaaaaaattgtacataa
aattagtaaatcaataaaattcaGCTAAAATATGTTTCAACTAATTTCTA
GATAGCTAAGCCCTTTCTTAACCGAAATACCACctcaaaattaaagtaaa
atttaaatACATTCAGCAGAATGTCAGCACTGTTGTTTTGGACtccaata
tttttctaaagcttttgaaaTTAATCTTTGTTTCAGTCTAATAAATTAAA
ATCATCTTAATTAcagtagaaaaaagttttcattaccaaaaataacataa
ctaaaattcaatcaaaatttttgaaataaaatttctaaataaaaattgat
atttgCCACTACATTCCAGATTCACTGCCAATTTATGTTCACGTACACAT
TTTGGTCATTGTGAAGCTATGATCTTACCATTGCTGGGAGTGTCAATATT
GTCNTTCAATGAATAAATGTTAGTCGTGGATATAACCATTTTCTGTTGTT
GACACCACAGAATGAGAatcctaaaaatgtaaaaaaatgtacTCTCttta
aaaaagcaattttgaCAAGGTATCAAAAAGGTATATAAGGTAGTAGGGTA
GTAGTTCTTCGAAAGCACATTTGCTAAATTGTTTCCTGTACTATCAGTAA
TGTATAAGAGGGAAGATttgtgaaaatcaaaaaaatttaataattttagT
TAGATAGTCAGTATGAAGAAACCTCCATCAGTCTGTCAGCATTCTCATTC
CAACAACATACTTTTCCCTCTCTTTtcatagaaaaaagaaataaatatcc
AACTCCTACCTTTATATTTGGATGTGAATCtgtatttaaaagatttccaa
taGATATTgtcaatattttgatgaaaaagcttgtaaaagtCAAAAATTTC
CACTTCACACTGATGGTGGGAGCAGAGTGCTTTCgaaaaagattgttttt
ttgcCCGACATTCATACAAATCACAACAACTGGGTTATCGAGACTTCGAC
TTTTTCTGACGCAATATCACGTGAACAGAACGTGATCATCCTATTtattt
gaaacaatgaaaactaCGCGCATATGTGAGGAGCTCTCCGTCCAGTCGTT
AGAAGTTCAtggattttttcacaaaattttgaaattcgggtctgtaaaat
acacatttttcgtgctactatattcatgatatgcaccattgcaatgtctt
ccattccacccaatagctgattggttgaaagtgacgtattgactgatttt
caCTTATAACCAATCAACTATTGGgtctgtgatgtaatgtcagaagacat
tgttCGTGCTACTATCTTGAAATTTTTGACACACAATATTTGATGTACTA
TCTAAAATCCTGCAGAGTTTTAATAGGTTTAATAGGTTTTAATACGTAGT
TCATGAGATATCTTGAAATGCAGTGCCCTACCCCAGGTTAAACTGCTCCA
AAAGCCATTGCCAAGTAAACACCCCCTCGGAAAAGTTATTGTCCCCTGTT
AACCTGAAAACCATCGCGATTCTCAAAATATAGATATGTTTGAACccaaa
aacagtttcaaaccTTTTCACTGTCAAGGTGGTACCTCATACCCCAAATT
GCCTGGACTATAGAACGAAAATCTTATTAAACTTAATATTTTACGTCCGC
TATACACCAAGTACTTTGCGGGAAAACTGCCTTCGGTGGGGGAAAGTTTG
TCCGTTTTACAGGCCTTATCACCCTTGAAGAGACTTTATTATGAGATGAT
GACTTAGAAACATTCCGTTCTAAAGAAAGAAATATCTGCTTTTATACTAG
GCCTACTTCAAACAGATTCCACTGAAAAAACTCGCACTTCAATCGGGAGG
TTTAGTTTAATTCAGTGAATTTGATTTTTCCATTAGGTGCATATAGATGT
GAACCATTGCGAGATTTCAACTGGGTATTACTAGCAGTCGTTATGTTTGG
TTTCTATATGTATTTCATTTTACAAGCCACGAGTATGGTAAGTACAAACA
CACTTTTTAACCTCATAACTTGAATTTAATTGAATTAAATAATTGATTAa
tcaattaaattgaaaataattacaaCCTTTGGATTAAGTTGCGAAGAAAA
TGCTAGTTTAGAGCTCCTTTTGACTCAATAAGTGAAACCGGTAGAAAACG
CTCCAACATCTCATCCAACCTTCGAAAAAtggcatgttggatgaaatgtt
ggccTTAAATTAAAGAGTTTTACTAAAATAGGCTGGTTGTCATTTTAGAT
CTTCTTTCttttaaaagcattttgctTGCTTATTTGTTTTTAGACGACTT
AACCCCTTCAAAGAGTACGGTTTTCGGTTAAAAGCCGGCCATTTCTGGTT
ATTTGTTACAAGCTTCACACTTCATAGTTTTTCCATTCATTTCAGTACAC
ATTGGTGAACCTCAACAACATGTTATGTCCTGCTGTCTCCGATCCTTTTG
CAGGGAGAAATTATCGATGGTTCGCAATGTTCCACCAGACTGCGCTCATC
CTCATCTTCGGTAAAACTTATACTGCCATATTGTCTCTCTTCCAAAGATT
CCTGGCTTACTGCAAATTCAAAAGTAGTGACCCAAGGAGGAAATTAACTA
AGCATGTCGATAAAGATGAATAATGAAATTGTGATTTTATTTgtatttcg
aaaaattgtatttttgtagcATTTTCATATCGGtcgttttcattaaaata
tgtTAGGAATATTTCACATGTTACTTATTTTTCGGGCCATATTTTGAAAA
CTCTGAAATAGGTAACTCTGAAGAAAGAAAACCCATTTCCCTGACCCAGC
TGAATCGATCATAAGCCCTTGGCCCTTCATTTTTCGAACATCCTTTCTCA
AAACATTACTACACCAAAGGCTGTCAGGCGTTTTAACCACCCTCTAGTGG
ACTTAATCAACGATCTAAACTGATGGGTGATGTATTTACCCTTTAGAAAC
TTTGAGCATTTTAGATGATTTCACTATTTGAGTCCGAAACCTTTTTTCTA
AGCCGTTACTTTAATGGgttaaactttcgcggggattaaatttcgcgttt
gggcctatccgcgaagttcaaaaatttcgcggggacttaatttcgcgggt
ggcactgtTGGGTGgtaatattttcacgattttttggcttttactGCCAA
ATCATGCACGTTGGTTGTTtaaatacacattattagcgcttctttgatgc
aagtaaccattcaaatagtatttatctgacatattttgagttttg Coding sequence (CDS) from alignment at scaffold_187:46600..55294+ >TCONS_00050789 ID=TCONS_00050789|Name=TCONS_00050789|organism=Clytia hemisphaerica|type=CDS|length=6888bp|location=Sequence derived from alignment at scaffold_187:46600..55294+ (Clytia hemisphaerica)
GCAAAAACGAAAGTGCAGgggaaagtaataaaaatggaaGACTCGCACGA
AGATAAGGTTCGCATTAACAAGAACTCTATCAGGATGGCTGGCCTGGAAT
CCATTCGAAACTTTTTGAAGATGAGTTATGAAGGTGTGGACTTTCAATTG
GCTGGCAATGGTGGTTTTGATTGCTACGATTACCTGACCATCCAATCACG
TGTCACTGACACCTGTGTCTTTGTAATGCTCGTTTTCATTTTGATCTTTC
CAAAGATTATTCGATCATTGACATTACCTAAGGAATGGGAAATCGCAAAG
TTCTGTCAGAAGCCCACCGCTCAAAGAATTTGTGGCTTTCGCAAATTTCT
TCTGATCGCGCTTTCTATTATTTTGGGCATTGAGCTTGGTTACAAGATAT
CAGAACGCTCTTGGATTTTCCTTCTCAACCCTTGTCACGTCATCACAATT
TTACagATTTACCTTCTAAGTGCTGAACCGGGGAGGATGTGCACTGCAGT
TTTCAGATTGCATATTCATTTGTTATTTGGGGCTTTTCTGGCATTTGTGT
TTCCAGTACTCAACACACGTGTGcgtcACGGAGAGCAGATGATTTATTAC
TTACAACATTTCATGATAACATTGGTGGTTCCACCTTATCTGATACATAC
TGGAGGTGCATATAGATGTGAACCATTGCGAGATTTCAACTGGGTATTAC
TAGCAGTCGTTATGTTTGGTTTCTATATGTATTTCATTTTACAAGCCACG
AGTATGTACACATTGGTGAACCTCAACAACATGTTATGTCCTGCTGTCTC
CGATCCTTTTGCAGGGAGAAATTATCGATGGTTCGCAATGTTCCACCAGA
CTGCGCTCATCCTCATCTTCGGTAAAACTTATACTGCCATATTGTCTCTC
TTCCAAAGATTCCTGGCTTACTGCAAATTCAAAAGTAGTGACCCAAGGAG
GAAATTAACTAAGCATGTCGATAAAGATGAATAAGCAAAAACGAAAGTGC
AGgggaaagtaataaaaatggaaGACTCGCACGAAGATAAGGTTCGCATT
AACAAGAACTCTATCAGGATGGCTGGCCTGGAATCCATTCGAAACTTTTT
GAAGATGAGTTATGAAGGTGTGGACTTTCAATTGGCTGGCAATGGTGGTT
TTGATTGCTACGATTACCTGACCATCCAATCACGTGTCACTGACACCTGT
GTCTTTGTAATGCTCGTTTTCATTTTGATCTTTCCAAAGATTATTCGATC
ATTGACATTACCTAAGGAATGGGAAATCGCAAAGTTCTGTCAGAAGCCCA
CCGCTCAAAGAATTTGTGGCTTTCGCAAATTTCTTCTGATCGCGCTTTCT
ATTATTTTGGGCATTGAGCTTGGTTACAAGATATCAGAACGCTCTTGGAT
TTTCCTTCTCAACCCTTGTCACGTCATCACAATTTTACagATTTACCTTC
TAAGTGCTGAACCGGGGAGGATGTGCACTGCAGTTTTCAGATTGCATATT
CATTTGTTATTTGGGGCTTTTCTGGCATTTGTGTTTCCAGTACTCAACAC
ACGTGTGcgtcACGGAGAGCAGATGATTTATTACTTACAACATTTCATGA
TAACATTGGTGGTTCCACCTTATCTGATACATACTGGAGGTGCATATAGA
TGTGAACCATTGCGAGATTTCAACTGGGTATTACTAGCAGTCGTTATGTT
TGGTTTCTATATGTATTTCATTTTACAAGCCACGAGTATGTACACATTGG
TGAACCTCAACAACATGTTATGTCCTGCTGTCTCCGATCCTTTTGCAGGG
AGAAATTATCGATGGTTCGCAATGTTCCACCAGACTGCGCTCATCCTCAT
CTTCGGTAAAACTTATACTGCCATATTGTCTCTCTTCCAAAGATTCCTGG
CTTACTGCAAATTCAAAAGTAGTGACCCAAGGAGGAAATTAACTAAGCAT
GTCGATAAAGATGAATAAGCAAAAACGAAAGTGCAGgggaaagtaataaa
aatggaaGACTCGCACGAAGATAAGGTTCGCATTAACAAGAACTCTATCA
GGATGGCTGGCCTGGAATCCATTCGAAACTTTTTGAAGATGAGTTATGAA
GGTGTGGACTTTCAATTGGCTGGCAATGGTGGTTTTGATTGCTACGATTA
CCTGACCATCCAATCACGTGTCACTGACACCTGTGTCTTTGTAATGCTCG
TTTTCATTTTGATCTTTCCAAAGATTATTCGATCATTGACATTACCTAAG
GAATGGGAAATCGCAAAGTTCTGTCAGAAGCCCACCGCTCAAAGAATTTG
TGGCTTTCGCAAATTTCTTCTGATCGCGCTTTCTATTATTTTGGGCATTG
AGCTTGGTTACAAGATATCAGAACGCTCTTGGATTTTCCTTCTCAACCCT
TGTCACGTCATCACAATTTTACagATTTACCTTCTAAGTGCTGAACCGGG
GAGGATGTGCACTGCAGTTTTCAGATTGCATATTCATTTGTTATTTGGGG
CTTTTCTGGCATTTGTGTTTCCAGTACTCAACACACGTGTGcgtcACGGA
GAGCAGATGATTTATTACTTACAACATTTCATGATAACATTGGTGGTTCC
ACCTTATCTGATACATACTGGAGGTGCATATAGATGTGAACCATTGCGAG
ATTTCAACTGGGTATTACTAGCAGTCGTTATGTTTGGTTTCTATATGTAT
TTCATTTTACAAGCCACGAGTATGTACACATTGGTGAACCTCAACAACAT
GTTATGTCCTGCTGTCTCCGATCCTTTTGCAGGGAGAAATTATCGATGGT
TCGCAATGTTCCACCAGACTGCGCTCATCCTCATCTTCGGTAAAACTTAT
ACTGCCATATTGTCTCTCTTCCAAAGATTCCTGGCTTACTGCAAATTCAA
AAGTAGTGACCCAAGGAGGAAATTAACTAAGCATGTCGATAAAGATGAAT
AAGCAAAAACGAAAGTGCAGgggaaagtaataaaaatggaaGACTCGCAC
GAAGATAAGGTTCGCATTAACAAGAACTCTATCAGGATGGCTGGCCTGGA
ATCCATTCGAAACTTTTTGAAGATGAGTTATGAAGGTGTGGACTTTCAAT
TGGCTGGCAATGGTGGTTTTGATTGCTACGATTACCTGACCATCCAATCA
CGTGTCACTGACACCTGTGTCTTTGTAATGCTCGTTTTCATTTTGATCTT
TCCAAAGATTATTCGATCATTGACATTACCTAAGGAATGGGAAATCGCAA
AGTTCTGTCAGAAGCCCACCGCTCAAAGAATTTGTGGCTTTCGCAAATTT
CTTCTGATCGCGCTTTCTATTATTTTGGGCATTGAGCTTGGTTACAAGAT
ATCAGAACGCTCTTGGATTTTCCTTCTCAACCCTTGTCACGTCATCACAA
TTTTACagATTTACCTTCTAAGTGCTGAACCGGGGAGGATGTGCACTGCA
GTTTTCAGATTGCATATTCATTTGTTATTTGGGGCTTTTCTGGCATTTGT
GTTTCCAGTACTCAACACACGTGTGcgtcACGGAGAGCAGATGATTTATT
ACTTACAACATTTCATGATAACATTGGTGGTTCCACCTTATCTGATACAT
ACTGGAGGTGCATATAGATGTGAACCATTGCGAGATTTCAACTGGGTATT
ACTAGCAGTCGTTATGTTTGGTTTCTATATGTATTTCATTTTACAAGCCA
CGAGTATGTACACATTGGTGAACCTCAACAACATGTTATGTCCTGCTGTC
TCCGATCCTTTTGCAGGGAGAAATTATCGATGGTTCGCAATGTTCCACCA
GACTGCGCTCATCCTCATCTTCGGTAAAACTTATACTGCCATATTGTCTC
TCTTCCAAAGATTCCTGGCTTACTGCAAATTCAAAAGTAGTGACCCAAGG
AGGAAATTAACTAAGCATGTCGATAAAGATGAATAAGCAAAAACGAAAGT
GCAGgggaaagtaataaaaatggaaGACTCGCACGAAGATAAGGTTCGCA
TTAACAAGAACTCTATCAGGATGGCTGGCCTGGAATCCATTCGAAACTTT
TTGAAGATGAGTTATGAAGGTGTGGACTTTCAATTGGCTGGCAATGGTGG
TTTTGATTGCTACGATTACCTGACCATCCAATCACGTGTCACTGACACCT
GTGTCTTTGTAATGCTCGTTTTCATTTTGATCTTTCCAAAGATTATTCGA
TCATTGACATTACCTAAGGAATGGGAAATCGCAAAGTTCTGTCAGAAGCC
CACCGCTCAAAGAATTTGTGGCTTTCGCAAATTTCTTCTGATCGCGCTTT
CTATTATTTTGGGCATTGAGCTTGGTTACAAGATATCAGAACGCTCTTGG
ATTTTCCTTCTCAACCCTTGTCACGTCATCACAATTTTACagATTTACCT
TCTAAGTGCTGAACCGGGGAGGATGTGCACTGCAGTTTTCAGATTGCATA
TTCATTTGTTATTTGGGGCTTTTCTGGCATTTGTGTTTCCAGTACTCAAC
ACACGTGTGcgtcACGGAGAGCAGATGATTTATTACTTACAACATTTCAT
GATAACATTGGTGGTTCCACCTTATCTGATACATACTGGAGGTGCATATA
GATGTGAACCATTGCGAGATTTCAACTGGGTATTACTAGCAGTCGTTATG
TTTGGTTTCTATATGTATTTCATTTTACAAGCCACGAGTATGTACACATT
GGTGAACCTCAACAACATGTTATGTCCTGCTGTCTCCGATCCTTTTGCAG
GGAGAAATTATCGATGGTTCGCAATGTTCCACCAGACTGCGCTCATCCTC
ATCTTCGGTAAAACTTATACTGCCATATTGTCTCTCTTCCAAAGATTCCT
GGCTTACTGCAAATTCAAAAGTAGTGACCCAAGGAGGAAATTAACTAAGC
ATGTCGATAAAGATGAATAAGCAAAAACGAAAGTGCAGgggaaagtaata
aaaatggaaGACTCGCACGAAGATAAGGTTCGCATTAACAAGAACTCTAT
CAGGATGGCTGGCCTGGAATCCATTCGAAACTTTTTGAAGATGAGTTATG
AAGGTGTGGACTTTCAATTGGCTGGCAATGGTGGTTTTGATTGCTACGAT
TACCTGACCATCCAATCACGTGTCACTGACACCTGTGTCTTTGTAATGCT
CGTTTTCATTTTGATCTTTCCAAAGATTATTCGATCATTGACATTACCTA
AGGAATGGGAAATCGCAAAGTTCTGTCAGAAGCCCACCGCTCAAAGAATT
TGTGGCTTTCGCAAATTTCTTCTGATCGCGCTTTCTATTATTTTGGGCAT
TGAGCTTGGTTACAAGATATCAGAACGCTCTTGGATTTTCCTTCTCAACC
CTTGTCACGTCATCACAATTTTACagATTTACCTTCTAAGTGCTGAACCG
GGGAGGATGTGCACTGCAGTTTTCAGATTGCATATTCATTTGTTATTTGG
GGCTTTTCTGGCATTTGTGTTTCCAGTACTCAACACACGTGTGcgtcACG
GAGAGCAGATGATTTATTACTTACAACATTTCATGATAACATTGGTGGTT
CCACCTTATCTGATACATACTGGAGGTGCATATAGATGTGAACCATTGCG
AGATTTCAACTGGGTATTACTAGCAGTCGTTATGTTTGGTTTCTATATGT
ATTTCATTTTACAAGCCACGAGTATGTACACATTGGTGAACCTCAACAAC
ATGTTATGTCCTGCTGTCTCCGATCCTTTTGCAGGGAGAAATTATCGATG
GTTCGCAATGTTCCACCAGACTGCGCTCATCCTCATCTTCGGTAAAACTT
ATACTGCCATATTGTCTCTCTTCCAAAGATTCCTGGCTTACTGCAAATTC
AAAAGTAGTGACCCAAGGAGGAAATTAACTAAGCATGTCGATAAAGATGA
ATAAGCAAAAACGAAAGTGCAGgggaaagtaataaaaatggaaGACTCGC
ACGAAGATAAGGTTCGCATTAACAAGAACTCTATCAGGATGGCTGGCCTG
GAATCCATTCGAAACTTTTTGAAGATGAGTTATGAAGGTGTGGACTTTCA
ATTGGCTGGCAATGGTGGTTTTGATTGCTACGATTACCTGACCATCCAAT
CACGTGTCACTGACACCTGTGTCTTTGTAATGCTCGTTTTCATTTTGATC
TTTCCAAAGATTATTCGATCATTGACATTACCTAAGGAATGGGAAATCGC
AAAGTTCTGTCAGAAGCCCACCGCTCAAAGAATTTGTGGCTTTCGCAAAT
TTCTTCTGATCGCGCTTTCTATTATTTTGGGCATTGAGCTTGGTTACAAG
ATATCAGAACGCTCTTGGATTTTCCTTCTCAACCCTTGTCACGTCATCAC
AATTTTACagATTTACCTTCTAAGTGCTGAACCGGGGAGGATGTGCACTG
CAGTTTTCAGATTGCATATTCATTTGTTATTTGGGGCTTTTCTGGCATTT
GTGTTTCCAGTACTCAACACACGTGTGcgtcACGGAGAGCAGATGATTTA
TTACTTACAACATTTCATGATAACATTGGTGGTTCCACCTTATCTGATAC
ATACTGGAGGTGCATATAGATGTGAACCATTGCGAGATTTCAACTGGGTA
TTACTAGCAGTCGTTATGTTTGGTTTCTATATGTATTTCATTTTACAAGC
CACGAGTATGTACACATTGGTGAACCTCAACAACATGTTATGTCCTGCTG
TCTCCGATCCTTTTGCAGGGAGAAATTATCGATGGTTCGCAATGTTCCAC
CAGACTGCGCTCATCCTCATCTTCGGTAAAACTTATACTGCCATATTGTC
TCTCTTCCAAAGATTCCTGGCTTACTGCAAATTCAAAAGTAGTGACCCAA
GGAGGAAATTAACTAAGCATGTCGATAAAGATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050789-exon-scaffold_187-1491911889:46600..46655 | TCONS_00050789-exon-scaffold_187-1491911889:46600..46655 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1510915933:46600..46655 | TCONS_00050789-exon-scaffold_187-1510915933:46600..46655 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1575043694:46600..46655 | TCONS_00050789-exon-scaffold_187-1575043694:46600..46655 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1491911889:46777..47176 | TCONS_00050789-exon-scaffold_187-1491911889:46777..47176 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1510915933:46777..47176 | TCONS_00050789-exon-scaffold_187-1510915933:46777..47176 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1575043694:46777..47176 | TCONS_00050789-exon-scaffold_187-1575043694:46777..47176 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1491911889:47375..47424 | TCONS_00050789-exon-scaffold_187-1491911889:47375..47424 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1510915933:47375..47424 | TCONS_00050789-exon-scaffold_187-1510915933:47375..47424 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1575043694:47375..47424 | TCONS_00050789-exon-scaffold_187-1575043694:47375..47424 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1491911889:47820..47886 | TCONS_00050789-exon-scaffold_187-1491911889:47820..47886 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1510915933:47820..47886 | TCONS_00050789-exon-scaffold_187-1510915933:47820..47886 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1575043694:47820..47886 | TCONS_00050789-exon-scaffold_187-1575043694:47820..47886 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1491911889:49197..49278 | TCONS_00050789-exon-scaffold_187-1491911889:49197..49278 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1510915933:49197..49278 | TCONS_00050789-exon-scaffold_187-1510915933:49197..49278 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1575043694:49197..49278 | TCONS_00050789-exon-scaffold_187-1575043694:49197..49278 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1491911889:53936..54036 | TCONS_00050789-exon-scaffold_187-1491911889:53936..54036 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1510915933:53936..54036 | TCONS_00050789-exon-scaffold_187-1510915933:53936..54036 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1575043694:53936..54036 | TCONS_00050789-exon-scaffold_187-1575043694:53936..54036 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1491911889:54445..55294 | TCONS_00050789-exon-scaffold_187-1491911889:54445..55294 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1510915933:54445..55294 | TCONS_00050789-exon-scaffold_187-1510915933:54445..55294 | Clytia hemisphaerica | exon |
| TCONS_00050789-exon-scaffold_187-1575043694:54445..55294 | TCONS_00050789-exon-scaffold_187-1575043694:54445..55294 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_187 | supercontig | scaffold_187:46600..55294 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR026508 | TMEM164 |
Blast
BLAST of TCONS_00050789 vs. Swiss-Prot (Human)
Match: TM164 (Transmembrane protein 164 OS=Homo sapiens GN=TMEM164 PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 9.391e-61 Identity = 111/266 (41.73%), Postives = 159/266 (59.77%), Query Frame = 1
Query: 100 SIRNFLKMSYEGVDFQLAGNGGFDCYDYLTIQSRVTDTCVFVMLVFILIFPKIIRSLTLPKE-------WEIAKFCQKPTAQRICGFRKFLLIALSIILGIELGYKISERSWIFLLNPCHVITILQIYLLSAEPGRMCTAVFRLHIHLLFGAFLAFVFPVLNTRVRHGEQMIYYLQHFMITLVVPPYLIHTGGAYRCEPLRDFNWVLLAVVMFGFYMYFILQATSMYTLVNLNNMLCPAVSDPFAGRNYRWFAMFHQTALILIFGK 876
S ++ L Y GVD AGNGG DC +L+ Q R+ ++ V + L + I + L KE + + Q+P + + LL+AL + G+E+G+K + ++ I+LLNPCH++T++ I+LL+ P R VF+L +H+L GA LA +FPV+NTR+ E IYY+QH M+ VVP YL+ GGAY EPL F W LL+ + FY + +LQ + T VNLNNMLCPA+SDPF G YR +A HQT + + GK
Sbjct: 5 SYQSLLDWLYGGVDPSFAGNGGPDCAAFLSWQQRLLESVVVLTLALLEILVALRHILRQTKEDGRGSPGSQPEQVTQRPEEGKESLSKNLLLVALCLTFGVEVGFKFATKTVIYLLNPCHLVTMMHIFLLACPPCRGAIVVFKLQMHMLNGALLALLFPVVNTRLLPFELEIYYIQHVML-YVVPIYLLWKGGAYTPEPLSSFRWALLSTGLMFFYHFSVLQILGLVTEVNLNNMLCPAISDPFYGPWYRIWASGHQTLMTMTHGK 269
The following BLAST results are available for this feature:
|
