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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050785 ID=TCONS_00050785|Name=TCONS_00050785|organism=Clytia hemisphaerica|type=transcript|length=3191bpRun BLAST on NCBI protein sequence of TCONS_00050785-protein >TCONS_00050785-protein ID=TCONS_00050785-protein|Name=TCONS_00050785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=759bp MADSRSNASRRDSENPDKSELDSSLSSRSPTETGSANIIFRSSELPHDSNRun BLAST on NCBI transcript from alignment at scaffold_187:29165..45840+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050785 ID=TCONS_00050785|Name=TCONS_00050785|organism=Clytia hemisphaerica|type=transcript|length=16676bp|location=Sequence derived from alignment at scaffold_187:29165..45840+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_187:29165..45840+ >TCONS_00050785 ID=TCONS_00050785|Name=TCONS_00050785|organism=Clytia hemisphaerica|type=CDS|length=27360bp|location=Sequence derived from alignment at scaffold_187:29165..45840+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050785 vs. Swiss-Prot (Human)
Match: ERIP6 (Glutamate-rich protein 6 OS=Homo sapiens GN=ERICH6 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.762e-25 Identity = 86/318 (27.04%), Postives = 160/318 (50.31%), Query Frame = 1
Query: 1465 CQFCGKPIMTV-PPXXXXXXXXXXXXCCPEYKHFIK-LHLQSVKDLADDGNEEEAELIDINPHAPYGNNKQSRKAPRDXXXXXXXXXXXXXXXVATQANI-FSF--ARQMKTIQYSLASTKCMAEGWTVNPKPPVEQSSNRDEEIFQVE--VNSTLLQRSEVLHTRLYENGKRFLTIFPDGTGCCYYPNGNVAVMITSTEKEKYTYIVQSNEKYDDLEDSGLLAIFEPSGNAICYYEINQKIRLFINPHGGIELDKQGRRKKRWQWFYSKGQSQAPAFQPICIQLNKYLSLRLLNQNNMALIFSALKRSIRFNVGSNL 2397
C+FCG + ++ E CC +++ I ++ + +K +AELI I+PHA +G+ KA + + +R + ++ FS ++++KTI Y L+ + E ++ Q N + I + + + R+E+L + Y++G +FLT FPDGT +YP+GN+A++ + +T IVQ D + +LA+ + SG + CY+ N + ++IN GG D+ G R + W W S S +F+P+ + LN+Y+ +R+L Q+ +++ F A+ + R +VG+ +
Sbjct: 271 CEFCGSDLRAFFSNVDVSSEPKGHASCCIAFQNLIDYIYEEQIK-----TKPPKAELIAIDPHAAHGSEVDRLKAKEKALQRKQEQRMARHFAIISREQTHFSEDDSKRLKTISYQLSVD--IPEKQIIDDIVFDFQLRNSNMSIICCDSRIACGKVVRNELLE-KHYKHGSKFLTSFPDGTTQIFYPSGNLAIIRVPNKVNGFTCIVQE----DMPTNPAILAVLDSSGRSSCYHP-NGNVWVYINILGGQYSDQAGNRIRAWNWSNSITSSPFVSFKPVFLALNRYIGVRILEQDKISITFLAMGQQARISVGTKV 575 The following BLAST results are available for this feature:
BLAST of TCONS_00050785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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