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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050781 ID=TCONS_00050781|Name=TCONS_00050781|organism=Clytia hemisphaerica|type=transcript|length=825bp
AAGCCTCTGTGCCTTTAGAAGCGTAACTTATATCGACTAAATAGGCCTtt
tgtttgaaagaaattttaaaagctaaaggagaaaaagagagaatttTCAA
ANGTACCGGATCCAACTTCCTAAACGATGAATAAACCCAGAATCGGCGGG
TTTTCGCAACCAGCCGGGTTGCCCAGACTCAAGGCCTGGCCTCTCATCAC
CGTGCACAGCCTAATAGCTACAGGAAACTGTCCATCGCGCGTAATTCGTG
TTGGACAAAATCTCTTGCTGTATGAAATGGAAAACACAAAGCCTAAAACA
ACGCTATGGACAGTTTCCCTACCGTATCATCCTCGCTGCTGAGAGACTCC
TAACCGTACAGCCGGTCCGGTAGGAGAATTTATCACAACCGTGTGCGCCC
GAAAACTGAGGAGGTCCGCCACCAGCCGGGATAAAGCCGGACTTTGTTCC
GAATCTGACCTCCCTATCGAGANGAATCTCCCAATACCAGCgacaatcac
cttggccaacatctcccaataccagcgacaatcaccttggccaacatctc
ccAATACCAACGACAATCCCCTTGGCCATCATCTCCAAAAACCAGCGACA
ATCACCTCGGCCCAACATCTCATCACCACCCATCTCCTTTGCCAAATTTA
GTTGCAGATATTGTTATATACTTGATAATATCTTGATGGTTTGTTTCATA
CAGTTTTCCCCCAAAAAAAATACTGTTTGAATGTTGTCTCCTTTCGTTTC
GTGTGCTACGAAAATTGTACGCTTCACTGCACAAACTACATTTATATCCA
TGAATGTGCATACTCTATATCTCTT Run BLAST on NCBI transcript from alignment at scaffold_186:115876..117142+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050781 ID=TCONS_00050781|Name=TCONS_00050781|organism=Clytia hemisphaerica|type=transcript|length=1267bp|location=Sequence derived from alignment at scaffold_186:115876..117142+ (Clytia hemisphaerica)
AAGCCTCTGTGCCTTTAGAAGCGTAACTTATATCGACTAAATAGGCCTtt
tgtttgaaagaaattttaaaagctaaaggagaaaaagagagaatttTCAA
ANGTACCGGATCCAACTTCCTAAACGATGAATAAACCCAGAATCGGCGGG
TTTTCGCAACCAGCCGGGTTGCCCAGACTCAAGGCCTGGCCTCTCATCAC
CGTGCACAGCCTAATAGCTACAGGAAACTGTCCATCGCGCGTAATTCGTG
TTGGACAAAATCTCTTGCTGTATGAAATGGAAAACACAAAGCCTAAAACA
ACGCTATGGACAGTTTCCCTACCGTATCATCCTCGCAGCTGAGANCGGCC
agaaatataataaaattgttCCCATTTTTGCGAGCCCCTTGCATAACACC
CAAAACCTAAttccaaataaaaatgttaaatatcACACAATCAAACATCT
GTTAGAGTTCATACCAATCATATTGAAAGCTTTTTATCCATATGGCTATT
TCTTGTTCCACCTTGTTCCAAGCAACTGAACTTTAGCATTCTCTTAAAGT
ATGTAAATAAAATGATAACCTGGGACAATATAAAGCTATGTNAATACTGA
AACTTAAGTGAGATCCGCCACCAGCCGGGAAGGAGCCGGACTTTGTTCCG
AATCTGATCTCCTTATCACGATGGGTTTGCTTCAGAATCAGCGGATTTTC
GCAACCAGCCGGGTTGCCCAGACAGCCGGCCTGGATCCTCACAACTTGCA
CTACAAACAATTACACTAACATCCTCGCTGCTGAGAGACTCCTAACCGTA
CAGCCGGTCCGGTAGGAGAATTTATCACAACCGTGTGCGCCCGAAAACTG
AGGAGGTCCGCCACCAGCCGGGATAAAGCCGGACTTTGTTCCGAATCTGA
CCTCCCTATCGAGANGAATCTCCCAATACCAGCgacaatcaccttggcca
acatctcccaataccagcgacaatcaccttggccaacatctcccAATACC
AACGACAATCCCCTTGGCCATCATCTCCAAAAACCAGCGACAATCACCTC
GGCCCAACATCTCATCACCACCCATCTCCTTTGCCAAATTTAGTTGCAGA
TATTGTTATATACTTGATAATATCTTGATGGTTTGTTTCATACAGTTTTC
CCCCAAAAAAAATACTGTTTGAATGTTGTCTCCTTTCGTTTCGTGTGCTA
CGAAAATTGTACGCTTCACTGCACAAACTACATTTATATCCATGAATGTG
CATACTCTATATCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050781-exon-scaffold_186-1491911889:115876..116203 | TCONS_00050781-exon-scaffold_186-1491911889:115876..116203 | Clytia hemisphaerica | exon |
| TCONS_00050781-exon-scaffold_186-1510915933:115876..116203 | TCONS_00050781-exon-scaffold_186-1510915933:115876..116203 | Clytia hemisphaerica | exon |
| TCONS_00050781-exon-scaffold_186-1575043694:115876..116203 | TCONS_00050781-exon-scaffold_186-1575043694:115876..116203 | Clytia hemisphaerica | exon |
| TCONS_00050781-exon-scaffold_186-1491911889:116646..117142 | TCONS_00050781-exon-scaffold_186-1491911889:116646..117142 | Clytia hemisphaerica | exon |
| TCONS_00050781-exon-scaffold_186-1510915933:116646..117142 | TCONS_00050781-exon-scaffold_186-1510915933:116646..117142 | Clytia hemisphaerica | exon |
| TCONS_00050781-exon-scaffold_186-1575043694:116646..117142 | TCONS_00050781-exon-scaffold_186-1575043694:116646..117142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_186 | supercontig | scaffold_186:115876..117142 + |
Blast
The following BLAST results are available for this feature:
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