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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050780 ID=TCONS_00050780|Name=TCONS_00050780|organism=Clytia hemisphaerica|type=transcript|length=613bp
GCTTGAATGCATTAGCGCAAGGATGCAGCTACTCGTCCGCTTACATTGTA
GTCTTCATTGGTGTTGACCGCTATATACGAGTAAAatacCTCAATGACTA
CAATATGAAATTCACTTCCCTCAAATTTCGAGTTGCTTTGATTTTTATGG
TGGTTTGTATTTTGATACAGTCGGCTCTCTCTGTGTATGGTCCAGCTGTC
TATGGTCCAGGCTACGGAGCATTAATGAACCTACCATTAAACTTTATCGG
AGCCGTAATTGTTGTAACATCGTATGTCATCTCAATTTTCAAGTTGAAGG
CGTACAACAAAGCCAGCAAAAAGCTAACATCCACAGACCGCTCATTGATC
TTCCTGGCGAAATTTCATGTTATACTTTTGTCCGTATGTTACGCGCCTGT
GGTGATATATAATTGCTTGTATTGGCTAATTAAATTTGATGACACCACTG
CCGCTATTTTTACCGCCGTCTTGTTCATGTTAGCTAGTCTACATTCGTGT
CTGAACGCACTTATTTTCACCTTACGTAATACAAAAAATCGCAATAAGGC
AAAAAGTCTTTGGAATACTTTACTGAAAAAAGAATGCGATGAAGACATAA
GGGCGCCTGTTGG Run BLAST on NCBI protein sequence of TCONS_00050780-protein >TCONS_00050780-protein ID=TCONS_00050780-protein|Name=TCONS_00050780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
LNALAQGCSYSSAYIVVFIGVDRYIRVKYLNDYNMKFTSLKFRVALIFMV
VCILIQSALSVYGPAVYGPGYGALMNLPLNFIGAVIVVTSYVISIFKLKA
YNKASKKLTSTDRSLIFLAKFHVILLSVCYAPVVIYNCLYWLIKFDDTTA
AIFTAVLFMLASLHSCLNALIFTLRNTKNRNKAKSLWNTLLKKECDEDIR
APV Run BLAST on NCBI transcript from alignment at scaffold_186:104103..109971+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050780 ID=TCONS_00050780|Name=TCONS_00050780|organism=Clytia hemisphaerica|type=transcript|length=5869bp|location=Sequence derived from alignment at scaffold_186:104103..109971+ (Clytia hemisphaerica)
GCTTGAATGCATTAGCGCAAGGATGCAGCTACTCGTCCGCTTACATTGTA
GTCTTCATTGGTGTTGACCGCTATATACGAGTAAAGTAAGccaaattgat
tttaaagctGTTAAATATCTCTCTTAATATACTAGAAAACTTAAATTGTT
GAAACAGCAAATAatgtaaaacagaaaaaatgaagcgactgcttatGTAT
CTTACGTATTAATTGTTgtcatctttcgtgacttcatcagcatatAGCTC
AACAAAATATGATATCATTTttatacaaaacaaaacaaaacacgtAAATA
AGggtttaaaacgtttaaaagttattttttgtaaaatttatagCTTCCAT
TATCAAAAGGATATCACGTTTTGTTGAGCTATAatatgctgatgaagtca
cgaaagatgacAACAATTAATACATAAGATACATAAgcagttgcttcatt
tttctgtcTTGATATActatactagccggtacccggcgtcgcacgccggt
taagctgttgCTGAGCGCACTTAAAGTTCTTTGGATGTTGAAGATGGCTT
AAAAGCACGATGAAATTAAAAAGGGAAGCAGaaatatcttcaaagtttga
ctctagtcctcccgggtgacgtatctgtTAATCatatttggagaaaaaaa
attgtgtccGCAGGGAGTTAATTTTCTCTCAAGTTAAAAATGATCCTGCT
TCGCTAATTCTAAATTTGCCATTAGTTCTcgataattttgaaaactttga
tgtcaagataaagGTCTAGGGCCACttgaaacatttgaaaactgaaatac
gcaaaaagtttcactttgatgaaaaaattactATTGACTCCACCTCCATG
GCTTAAAGAAAACATATACAAATCGGTTTCTGaaacaaaatataatttaa
aaaattcatcaGTAGTAGATAGAAACAGTTGCAGAAAGCGTTTGAAACCT
TTCATTGTTGTAGTGTGGTGGGCGTAAATCACCgtaataccgacaaaatt
ttcctaaaacacCGACATCGACGTCTTTTAGAGCAAGCTTAAGATTTTTA
TTCTTAGTACGAATGCTCAATATCACGAGCGTAGTAGTGCACTAGTTCAG
TTTTTCTTGGAGAAAACTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCGACTAGTGGATAAACAAATCCAGAATTTTTAGGGAACACTTTGAAA
GTgctatttttactttagtgctTACTTTAGTTgactttgaagaaaaacat
ttaaaagatcTTTGCAAAAAACGAGGGAACAAAAGAGATATCTGAATGTA
TAAAGTCATGGaggaggaggcgcaaccatggtttgcgcaaacggagaaaa
ttttcccatttttgtcCCCTTGTTTAGCTAAAAGAGATCTTTTTGAACGT
TACCGTTGACCGTTTCCACCATCCAGATAAATAGTTCGTTTGATTTAGAC
TGAAACTAAACAGGTATTGAAAGCCTGCAAAGAGAGCTCTGCAAGGGGAG
GACCACGGGaagtattttattttgaaaggcaAATGAGATATGAttcgagg
gccaaccatggtttggcccgaggaggcaaaatttgaaatttaaggtgCCA
GAAATGCTGAAAAACGCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATCTAAATCATAGGT
TAATGGATTATTccgtaaaatgaaagaatttaacGATTGTTGATTTTTGA
TGAGTGCTGCATTCGAGACCTCGAGAAATTCTGCAAACTTAGCTTTCTTT
ACTTGTTACCCactattatgatttttttcataaagtgCACATTTCCCGTA
AAGAAGTCGTGCacacaattttaaaaagaggATGAGACAGGgtagctacc
aaaaatagctatATTATAGCTACAATTCTACTCGTCATAGCTACAATTCT
GCTCGTCATAGCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCAACACCGAAACGCCGACGCAAAAAAGGGTCA
ATACCGACACACCgacaaacccgtacgcccccccccacGTGGTGATGACT
GTGACAGAGCTTGTTTTGCTGAGGTTTCTCTGAGGTGGGTGGGCCACTTG
AAAGAAAGTTTAGCGATTGAATTGCAACTTGTTTATCTTTCATTTTGATT
GAGTTTATTTCAAGTGGACCCCAAACCTTAAGGGGAGTGAAAATATAGAC
ATGACACGCAATTCTTCAGGAAAGAAAGACACACAGACAAAAAAGTATAA
GCTGCAAAAAAGTGCAATTtcatgttgctttttataaaaccttcgtcata
acttttcgaattcaacCATGAATGACCTACAGCTAAATAATTATTgactt
tgatgtttttaagaaaaattttcaagggggcgccaaaattttgttgatgt
ttaattgggcaatTTGGCGCACTCTCCGGCACGTTTATAGCGCCTTCTTT
CTATgagtacaatgttaattttaccctcttgcatcctttctcttgaattt
tttcaaaacttctatcaatattgaatcagaagtaagagaagtgttgtgta
tccaccaggggttaaagagaatgctcaccctcaaaatgagagattgccaa
aatgatcaaaacttgttgattctcgctgtggtttttgtggtcttatactg
actaactttctccgttTTAGAGGATCtgttaagctgtttgacctttctta
caccaaaattACAAGGAACCCTTCCTCCCAACTTCAGAATTTTTGGGGCT
TCTTTCAGCCAGTGATCTTTATaggagagtaaagtaagaccagcggcgca
aaagtttaaagattatcaggtaatttttctgataagagttttagaaagca
aaaatatagactaaatcgacttaccaggtataaaatttccatttcaaaga
ttagggacgttactttcaaccagtcactgctcttacagtttagtatttCC
ACTTAATGAttgagggcgcaaataaggacaaaaataccaagGGCGCCagt
ttcatagtttgcaccaccaaaaaaattaagccaggccgctactgataGAT
AGGGTCATATATATGTTATAAATGTACTAGGTACCTAtatgaaatgtttt
tatttgaatacGCTATTTGTCTATACTCTCTTCATCgatttaaaactttt
caaatctGAGTCTTAAGATATTTCTAGTGattcttgaatttttaaaagag
ccaagaaaaattctaaatatcACAGTAAGtataaggaaagaaaaattgaa
aaaaactgaGGCTCAGCATTATTTTAAACACTTAAAGTTTTGTATTTCTT
ATTAAAggagttcttaaaaaaaactttagtattttcttgtttttttttag
atacCTCAATGACTACAATATGAAATTCACTTCCCTCAAATTTCGAGTTG
CTTTGATTTTTATGGTGGTTTGTATTTTGATACAGTCGGCTCTCTCTGTG
TATGGTCCAGCTGTCTATGGTAAGTTGTTTACCNATGGTGGTTTGTATTT
TGATACAGTCGGCCCTCTCTGTGTATGGTCCAGCTGTCTATGGTAAGTTG
TTTACCGTGACCAATTAAATCTCGTCACTCCATAAcagggggggtttgta
ggggttcaaAATACCgctttcccgtcaaaatttttgctgaatcccggaat
cccgaaaatttaaaaaataataacaccgtcacaccggcttgtacagggca
aaaatgtacctaaataccgtcaccgtctgattttaaaataccgttttccc
gtctcttttttcgtcaaatcccttAATACCGTActtaaaaagggccaatc
ccgtcacacggTAAAAATACAAACCCCCGTAACctttacaaaaattttga
ctCAGAAGAATACGCGCACACAACTCAACTACGAATGAAACGCTAATCTG
GACTTTTTTTTATTCGGGTGCCCCTAGGTCCTTCTACCAATACGAGAAAG
TGTGTGTAATTAATGGTTTAAGGTATTTGTTATCATGGATTTAATTCTTT
CGAGTGTCTTAagaaatcaggcaaaattccttcgatatttcggaattctg
aaattaaTTTAATGAATAACCTGTGAAGTGTTTCAGTAGATATCAATGAT
TCAGTGCAGCCTCGGCTATACCAAGAGACTTAGATTAATTAAGGTAAAAG
GTATGAGACTCTTAAAACACAGTTAGTTTTAACTATCGGACAAACTTCTA
GCCCCATTGATgtttatggcgcgccaaaatggtttttaataccaactttt
cTTTCCTGATGCTATCTTTTTTCTTGATGtcaacttttttcaatattaac
ttttttttttcgataccAACCTTTTTTGTCTAGATTCCTCGATTTCATTA
TTTTGCAATGTAGGCAGAGGCTTATAACACGGATGCATACTACATCATTG
GTCGAAGTTAGATTTAACTGAAATTTGGAATTTGCTGATTTCggaaacaa
tagcagcaatatttttccCGATATTGAAGAGCTTGAAGCACTTGGAACGC
TTCCAAATATTGTTTGTAGCTACAAGATTTTGTGggagttttctttttta
ctcaactttttttgaaataaaaaatgccgATCTTATCGGATAGGAAAAAT
TAATCCAAACAGCTCTTGATGCTCCACGAATTCCACGCAAGCGCTTCCAC
ACCATCTCGCTCGTTCTTGTATTTTATTAAGGGTCCCTTTACACTTGAAT
AGTTACTCATCGAGGCAAAAGTTTGTATTGTACaatgttattgaaaaaaa
agttggcaTTGAAAGAAATGTTGGTAtcgaaaaaaaaagagttggtatcg
aaaaaaaaattcgtatCGAAAAAAGAAAGTtcgtattgaaaaaaaaagtt
ggtgtagaaaaaaaatgttggtatcgaaaaaaagttggtattaaaatAGA
TGTTGCCCACTTTGGAGTaaatacaatatttttataatgtcACAATGTTC
CTTCTTTTAGGTCCAGGCTACGGAGCATTAATGAACCTACCATTAAACTT
TATCGGAGCCGTAATTGTTGTAACATCGTATGTCATCTCAATTTTCAAGT
TGAAGGCGTACAACAAAGCCAGCAAAAAGCTAACATCCACAGACCGCTCA
TTGATCTTCCTGGCGAAATTTCATGTTATACTTTTGTCCGTATGTTACGC
GCCTGTGGTGATATATAATTGCTTGTATTGGCTAATTAAATTTGATGACA
CCACTGCCGCTATTTTTACCGCCGTCTTGTTCATGTTAGCTAGTCTACAT
TCGTGTCTGAACGCACTTATTTTCACCTTACGTAATACAAAAAATCGCAA
TAAGGCAAAAAGTCTTTGGAATACTTTACTGAAAAAAGAATGCGATGAAG
ACATAAGGGCGCCTGTTGG Coding sequence (CDS) from alignment at scaffold_186:104103..109971+ >TCONS_00050780 ID=TCONS_00050780|Name=TCONS_00050780|organism=Clytia hemisphaerica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_186:104103..109971+ (Clytia hemisphaerica)
TTGAATGCATTAGCGCAAGGATGCAGCTACTCGTCCGCTTACATTGTAGT
CTTCATTGGTGTTGACCGCTATATACGAGTAAAatacCTCAATGACTACA
ATATGAAATTCACTTCCCTCAAATTTCGAGTTGCTTTGATTTTTATGGTG
GTTTGTATTTTGATACAGTCGGCTCTCTCTGTGTATGGTCCAGCTGTCTA
TGGTCCAGGCTACGGAGCATTAATGAACCTACCATTAAACTTTATCGGAG
CCGTAATTGTTGTAACATCGTATGTCATCTCAATTTTCAAGTTGAAGGCG
TACAACAAAGCCAGCAAAAAGCTAACATCCACAGACCGCTCATTGATCTT
CCTGGCGAAATTTCATGTTATACTTTTGTCCGTATGTTACGCGCCTGTGG
TGATATATAATTGCTTGTATTGGCTAATTAAATTTGATGACACCACTGCC
GCTATTTTTACCGCCGTCTTGTTCATGTTAGCTAGTCTACATTCGTGTCT
GAACGCACTTATTTTCACCTTACGTAATACAAAAAATCGCAATAAGGCAA
AAAGTCTTTGGAATACTTTACTGAAAAAAGAATGCGATGAAGACATAAGG
GCGCCTGTTTTGAATGCATTAGCGCAAGGATGCAGCTACTCGTCCGCTTA
CATTGTAGTCTTCATTGGTGTTGACCGCTATATACGAGTAAAatacCTCA
ATGACTACAATATGAAATTCACTTCCCTCAAATTTCGAGTTGCTTTGATT
TTTATGGTGGTTTGTATTTTGATACAGTCGGCTCTCTCTGTGTATGGTCC
AGCTGTCTATGGTCCAGGCTACGGAGCATTAATGAACCTACCATTAAACT
TTATCGGAGCCGTAATTGTTGTAACATCGTATGTCATCTCAATTTTCAAG
TTGAAGGCGTACAACAAAGCCAGCAAAAAGCTAACATCCACAGACCGCTC
ATTGATCTTCCTGGCGAAATTTCATGTTATACTTTTGTCCGTATGTTACG
CGCCTGTGGTGATATATAATTGCTTGTATTGGCTAATTAAATTTGATGAC
ACCACTGCCGCTATTTTTACCGCCGTCTTGTTCATGTTAGCTAGTCTACA
TTCGTGTCTGAACGCACTTATTTTCACCTTACGTAATACAAAAAATCGCA
ATAAGGCAAAAAGTCTTTGGAATACTTTACTGAAAAAAGAATGCGATGAA
GACATAAGGGCGCCTGTTTTGAATGCATTAGCGCAAGGATGCAGCTACTC
GTCCGCTTACATTGTAGTCTTCATTGGTGTTGACCGCTATATACGAGTAA
AatacCTCAATGACTACAATATGAAATTCACTTCCCTCAAATTTCGAGTT
GCTTTGATTTTTATGGTGGTTTGTATTTTGATACAGTCGGCTCTCTCTGT
GTATGGTCCAGCTGTCTATGGTCCAGGCTACGGAGCATTAATGAACCTAC
CATTAAACTTTATCGGAGCCGTAATTGTTGTAACATCGTATGTCATCTCA
ATTTTCAAGTTGAAGGCGTACAACAAAGCCAGCAAAAAGCTAACATCCAC
AGACCGCTCATTGATCTTCCTGGCGAAATTTCATGTTATACTTTTGTCCG
TATGTTACGCGCCTGTGGTGATATATAATTGCTTGTATTGGCTAATTAAA
TTTGATGACACCACTGCCGCTATTTTTACCGCCGTCTTGTTCATGTTAGC
TAGTCTACATTCGTGTCTGAACGCACTTATTTTCACCTTACGTAATACAA
AAAATCGCAATAAGGCAAAAAGTCTTTGGAATACTTTACTGAAAAAAGAA
TGCGATGAAGACATAAGGGCGCCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050780-exon-scaffold_186-1491911889:104103..104187 | TCONS_00050780-exon-scaffold_186-1491911889:104103..104187 | Clytia hemisphaerica | exon |
| TCONS_00050780-exon-scaffold_186-1510915933:104103..104187 | TCONS_00050780-exon-scaffold_186-1510915933:104103..104187 | Clytia hemisphaerica | exon |
| TCONS_00050780-exon-scaffold_186-1575043694:104103..104187 | TCONS_00050780-exon-scaffold_186-1575043694:104103..104187 | Clytia hemisphaerica | exon |
| TCONS_00050780-exon-scaffold_186-1491911889:107953..108071 | TCONS_00050780-exon-scaffold_186-1491911889:107953..108071 | Clytia hemisphaerica | exon |
| TCONS_00050780-exon-scaffold_186-1510915933:107953..108071 | TCONS_00050780-exon-scaffold_186-1510915933:107953..108071 | Clytia hemisphaerica | exon |
| TCONS_00050780-exon-scaffold_186-1575043694:107953..108071 | TCONS_00050780-exon-scaffold_186-1575043694:107953..108071 | Clytia hemisphaerica | exon |
| TCONS_00050780-exon-scaffold_186-1491911889:109563..109971 | TCONS_00050780-exon-scaffold_186-1491911889:109563..109971 | Clytia hemisphaerica | exon |
| TCONS_00050780-exon-scaffold_186-1510915933:109563..109971 | TCONS_00050780-exon-scaffold_186-1510915933:109563..109971 | Clytia hemisphaerica | exon |
| TCONS_00050780-exon-scaffold_186-1575043694:109563..109971 | TCONS_00050780-exon-scaffold_186-1575043694:109563..109971 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_186 | supercontig | scaffold_186:104103..109971 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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