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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050763 ID=TCONS_00050763|Name=TCONS_00050763|organism=Clytia hemisphaerica|type=transcript|length=1140bp
TCGTTCTAATACTGTAAAGCGTTTCAAactattaaaaaataaacaattat
TTTCATATAATTATCATATATTGAATATATCTTATTTAACATTACTAGTA
CAAGGATTATTTCTTTAATCACTTTGATTGGATTAACGCCTTATTCACCA
CTTCGAATAATTAACTGggctttaaaaaacaaaaacgaataTTTTACTTG
TTTTAGCTTCAGCTGAAAATCATACTCACCAATCAAGCTTTGAGGGGTCG
ATACCTTTTGTACAATAACGAAATTGGCAACAAGAACCTCCTCGTGCTAT
TGTAGAATTATGATTGAACTCAAGCCATGGTGATAAAACATCAGCTAGAA
TCTGATCAAAATTACACATAACACTTCCAACTCTTTCACCTTTACCATGC
CTTTGAAAACACTCGTAAAACAAACACCGATTAAGGTTGAAACCATAAGA
ATTACCACTTTTGATCCCAAGAATATCAGGATCAAAATCTTTATAAACAT
TCATTGTTCCACTGGTACAATAAGCAGCAAACTTCTCAATAGGTGATTCA
CCATCAGGAGTCTCCACAGCTCTCTTCAACCTACCTTTTATACCCCTATA
AAGAGGCACCATCATGAATTTCCAGTTACCAAGAATATGTTTCTCGCAAT
CACAATCAGACATTCCAACCTTACTGAAGGCTGTATCCATGGCCATCGTT
ACGATAGCAGAGTAAATATGCTTTTCTTTATCAGAGTTGGTCATATGCTT
TAATTCTTGAGTTACATAAGAATCAACTTCCCTAGAAtaaattttcatga
tttcttcCTGTGTGGATTTTTCTTTAAGCACATTTTCAGCAACATCTTCT
TTTTTGCCTTCTTTCTCCAGATAAAGTTTTAAGTTGTTTTCATGAAAAGT
TCTGAGTAAAGacatatttttaaagaattctatGGTTAAATACAAAAAAG
GAATCAACAAAATTATTTCTAAATTATCCAATAGACTTATGTACTTATGT
TAAAAACTTCAATAAATTACACACTTGCCAGCCACCTAACTATCCATTTA
ATACTTTAGATAGAGTAACTCACaactttgtttactttcctATAAATTCA
GTGCTTTCATCAGCAACTTGCTTCTTTTCCACTCATCCTC Run BLAST on NCBI protein sequence of TCONS_00050763-protein >TCONS_00050763-protein ID=TCONS_00050763-protein|Name=TCONS_00050763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MSLLRTFHENNLKLYLEKEGKKEDVAENVLKEKSTQEEIMKIYSREVDSY
VTQELKHMTNSDKEKHIYSAIVTMAMDTAFSKVGMSDCDCEKHILGNWKF
MMVPLYRGIKGRLKRAVETPDGESPIEKFAAYCTSGTMNVYKDFDPDILG
IKSGNSYGFNLNRCLFYECFQRHGKGERVGSVMCNFDQILADVLSPWLEF
NHNSTIARGGSCCQFRYCTKGIDPSKLDW Run BLAST on NCBI transcript from alignment at scaffold_185:12060..13199 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050763 ID=TCONS_00050763|Name=TCONS_00050763|organism=Clytia hemisphaerica|type=transcript|length=1140bp|location=Sequence derived from alignment at scaffold_185:12060..13199 (Clytia hemisphaerica)
GAGGATGAGTGGAAAAGAAGCAAGTTGCTGATGAAAGCACTGAATTTATa
ggaaagtaaacaaagttGTGAGTTACTCTATCTAAAGTATTAAATGGATA
GTTAGGTGGCTGGCAAGTGTGTAATTTATTGAAGTTTTTAACATAAGTAC
ATAAGTCTATTGGATAATTTAGAAATAATTTTGTTGATTCCTTTTTTGTA
TTTAACCatagaattctttaaaaatatgtCTTTACTCAGAACTTTTCATG
AAAACAACTTAAAACTTTATCTGGAGAAAGAAGGCAAAAAAGAAGATGTT
GCTGAAAATGTGCTTAAAGAAAAATCCACACAGgaagaaatcatgaaaat
ttaTTCTAGGGAAGTTGATTCTTATGTAACTCAAGAATTAAAGCATATGA
CCAACTCTGATAAAGAAAAGCATATTTACTCTGCTATCGTAACGATGGCC
ATGGATACAGCCTTCAGTAAGGTTGGAATGTCTGATTGTGATTGCGAGAA
ACATATTCTTGGTAACTGGAAATTCATGATGGTGCCTCTTTATAGGGGTA
TAAAAGGTAGGTTGAAGAGAGCTGTGGAGACTCCTGATGGTGAATCACCT
ATTGAGAAGTTTGCTGCTTATTGTACCAGTGGAACAATGAATGTTTATAA
AGATTTTGATCCTGATATTCTTGGGATCAAAAGTGGTAATTCTTATGGTT
TCAACCTTAATCGGTGTTTGTTTTACGAGTGTTTTCAAAGGCATGGTAAA
GGTGAAAGAGTTGGAAGTGTTATGTGTAATTTTGATCAGATTCTAGCTGA
TGTTTTATCACCATGGCTTGAGTTCAATCATAATTCTACAATAGCACGAG
GAGGTTCTTGTTGCCAATTTCGTTATTGTACAAAAGGTATCGACCCCTCA
AAGCTTGATTGGTGAGTATGATTTTCAGCTGAAGCTAAAACAAGTAAAAt
attcgtttttgttttttaaagccCAGTTAATTATTCGAAGTGGTGAATAA
GGCGTTAATCCAATCAAAGTGATTAAAGAAATAATCCTTGTACTAGTAAT
GTTAAATAAGATATATTCAATATATGATAATTATATGAAAataattgttt
attttttaatagtTTGAAACGCTTTACAGTATTAGAACGA Coding sequence (CDS) from alignment at scaffold_185:12060..13199 >TCONS_00050763 ID=TCONS_00050763|Name=TCONS_00050763|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_185:12060..13199 (Clytia hemisphaerica)
atgtCTTTACTCAGAACTTTTCATGAAAACAACTTAAAACTTTATCTGGA
GAAAGAAGGCAAAAAAGAAGATGTTGCTGAAAATGTGCTTAAAGAAAAAT
CCACACAGgaagaaatcatgaaaatttaTTCTAGGGAAGTTGATTCTTAT
GTAACTCAAGAATTAAAGCATATGACCAACTCTGATAAAGAAAAGCATAT
TTACTCTGCTATCGTAACGATGGCCATGGATACAGCCTTCAGTAAGGTTG
GAATGTCTGATTGTGATTGCGAGAAACATATTCTTGGTAACTGGAAATTC
ATGATGGTGCCTCTTTATAGGGGTATAAAAGGTAGGTTGAAGAGAGCTGT
GGAGACTCCTGATGGTGAATCACCTATTGAGAAGTTTGCTGCTTATTGTA
CCAGTGGAACAATGAATGTTTATAAAGATTTTGATCCTGATATTCTTGGG
ATCAAAAGTGGTAATTCTTATGGTTTCAACCTTAATCGGTGTTTGTTTTA
CGAGTGTTTTCAAAGGCATGGTAAAGGTGAAAGAGTTGGAAGTGTTATGT
GTAATTTTGATCAGATTCTAGCTGATGTTTTATCACCATGGCTTGAGTTC
AATCATAATTCTACAATAGCACGAGGAGGTTCTTGTTGCCAATTTCGTTA
TTGTACAAAAGGTATCGACCCCTCAAAGCTTGATTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050763-exon-scaffold_185-1491911889:12060..13199 | TCONS_00050763-exon-scaffold_185-1491911889:12060..13199 | Clytia hemisphaerica | exon |
| TCONS_00050763-exon-scaffold_185-1510915933:12060..13199 | TCONS_00050763-exon-scaffold_185-1510915933:12060..13199 | Clytia hemisphaerica | exon |
| TCONS_00050763-exon-scaffold_185-1575043694:12060..13199 | TCONS_00050763-exon-scaffold_185-1575043694:12060..13199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:12060..13199 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR026002 | ATC_hydrolase |
Blast
The following BLAST results are available for this feature:
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