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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050760 ID=TCONS_00050760|Name=TCONS_00050760|organism=Clytia hemisphaerica|type=transcript|length=1366bp
CGGGTATTAAAAGTACCTTTGGTTGGTTCAGAAACTCTAGTGGTACCTAG
ACCACAAAGCCATGGCAGTTCAGCAAATTGCATAGATCCGCAACGTTGAA
ATATTCCGCAACGTTGCGGTTTTTCGCAGCGTTTCCCCAGGGTTGCGCTG
CTATTTTATGCAATGCTTCCAATTGAAGcttgtgattttaaaaattatga
gcgCCTACCAATTTTCTTCTAAACACATGCAAAGTCAGGCATGCAAAACC
TTCCTTTCTTGAACAAAGTAGCGCTTTTTTGAATGGTAGCATTTCTTCCA
AGAATGATTGTGAATAATCGCtaggtaggaaattaaaatgctaagggtaa
aaagtttccttttgggttgttcttcaaaatgcaCATTATTTTGGGACCCC
GGTCCAGGCTCTACGATGCCGGTTTTGGTCCAAAGGCCAGAGCTGCGAAA
TTATGCAGCAGTAAAGCTGCGGAATTTAGCAACGTTGCGGAATATCACAA
CTCTAAAGATATGCAGAATTTTGCAGCGTTGCGGATCTGAGCAATTTGCC
AAACTGATGGCActaattttaattcacaatctACCGTAAGTTGATATAAT
attgacatccctcgtctaattctgacacccttttttataaagaaaagaat
gATATGAAAGCTGAAATCActtattgaaaaaggattattcctctctgaca
gcaaagaaaaacagtttcaacctttctataaatttcagctgataaaaagg
gtgtcggaattagaggagggggtcgacacattagaccaagttacggtact
tACAGTGTGTGTACCGTGAGtagtcctaaatccgacagccctgcctaaat
ccaatggggtctttcaaaaatacaaactgaaataaaaacaaacagtcTTC
CATCCCAGATGACTGGAGGCATGCCCTGGTTGCCCCTGTTTTCAAACCTG
GTAAAACCGACGAATCCAAAGCCTGTAACTACAGGCCTATCAGTCTTACC
TCCATATCCTGTAAAAATTTGGAGCATATTTTACACAGCAACATTATGTC
CCATCTTGACAACACCAACATTCTGACAGATAGCCAGCATGGTTTCAGGA
AACATCGGTCATGTGAATCACAACTTGTAACAACCATCCAAAACCTTGCT
AAGTCCCTGAACGAAGCTAAGCAAATCGACTCAATTCTACTTGACTTTTC
AAAGGCTTTTGATAAAGTTGACCACAAAAAACTTTGTCTAAAAGTTCATC
ATTATGGCGTAAGGAGTAAAACTCTTGAATGGATCACCAACTACCTCTCC
GATCGCACTCAAACTGTTGTCGTTAACGGCGAgtcatctgaaaaagctaa
tgttATCTCTGGAGTT Run BLAST on NCBI protein sequence of TCONS_00050760-protein >TCONS_00050760-protein ID=TCONS_00050760-protein|Name=TCONS_00050760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MSHLDNTNILTDSQHGFRKHRSCESQLVTTIQNLAKSLNEAKQIDSILLD
FSKAFDKVDHKKLCLKVHHYGVRSKTLEWITNYLSDRTQTVVVNGESSEK
ANVISGV Run BLAST on NCBI transcript from alignment at scaffold_185:4278..5643 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050760 ID=TCONS_00050760|Name=TCONS_00050760|organism=Clytia hemisphaerica|type=transcript|length=1366bp|location=Sequence derived from alignment at scaffold_185:4278..5643 (Clytia hemisphaerica)
AACTCCAGAGATaacattagctttttcagatgacTCGCCGTTAACGACAA
CAGTTTGAGTGCGATCGGAGAGGTAGTTGGTGATCCATTCAAGAGTTTTA
CTCCTTACGCCATAATGATGAACTTTTAGACAAAGTTTTTTGTGGTCAAC
TTTATCAAAAGCCTTTGAAAAGTCAAGTAGAATTGAGTCGATTTGCTTAG
CTTCGTTCAGGGACTTAGCAAGGTTTTGGATGGTTGTTACAAGTTGTGAT
TCACATGACCGATGTTTCCTGAAACCATGCTGGCTATCTGTCAGAATGTT
GGTGTTGTCAAGATGGGACATAATGTTGCTGTGTAAAATATGCTCCAAAT
TTTTACAGGATATGGAGGTAAGACTGATAGGCCTGTAGTTACAGGCTTTG
GATTCGTCGGTTTTACCAGGTTTGAAAACAGGGGCAACCAGGGCATGCCT
CCAGTCATCTGGGATGGAAgactgtttgtttttatttcagtttgtatttt
tgaaagaccccattggatttaggcagggctgtcggatttaggactaCTCA
CGGTACACACACTGTaagtaccgtaacttggtctaatgtgtcgaccccct
cctctaattccgacaccctttttatcagctgaaatttatagaaaggttga
aactgtttttctttgctgtcagagaggaataatcctttttcaataagTGA
TTTCAGCTTTCATATcattcttttctttataaaaaagggtgtcagaatta
gacgagggatgtcaatATTATATCAACTTACGGTagattgtgaattaaaa
ttagTGCCATCAGTTTGGCAAATTGCTCAGATCCGCAACGCTGCAAAATT
CTGCATATCTTTAGAGTTGTGATATTCCGCAACGTTGCTAAATTCCGCAG
CTTTACTGCTGCATAATTTCGCAGCTCTGGCCTTTGGACCAAAACCGGCA
TCGTAGAGCCTGGACCGGGGTCCCAAAATAATGtgcattttgaagaacaa
cccaaaaggaaactttttacccttagcattttaatttcctacctaGCGAT
TATTCACAATCATTCTTGGAAGAAATGCTACCATTCAAAAAAGCGCTACT
TTGTTCAAGAAAGGAAGGTTTTGCATGCCTGACTTTGCATGTGTTTAGAA
GAAAATTGGTAGGcgctcataatttttaaaatcacaagCTTCAATTGGAA
GCATTGCATAAAATAGCAGCGCAACCCTGGGGAAACGCTGCGAAAAACCG
CAACGTTGCGGAATATTTCAACGTTGCGGATCTATGCAATTTGCTGAACT
GCCATGGCTTTGTGGTCTAGGTACCACTAGAGTTTCTGAACCAACCAAAG
GTACTTTTAATACCCG Coding sequence (CDS) from alignment at scaffold_185:4278..5643 >TCONS_00050760 ID=TCONS_00050760|Name=TCONS_00050760|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_185:4278..5643 (Clytia hemisphaerica)
AACTCCAGAGATaacattagctttttcagatgacTCGCCGTTAACGACAA
CAGTTTGAGTGCGATCGGAGAGGTAGTTGGTGATCCATTCAAGAGTTTTA
CTCCTTACGCCATAATGATGAACTTTTAGACAAAGTTTTTTGTGGTCAAC
TTTATCAAAAGCCTTTGAAAAGTCAAGTAGAATTGAGTCGATTTGCTTAG
CTTCGTTCAGGGACTTAGCAAGGTTTTGGATGGTTGTTACAAGTTGTGAT
TCACATGACCGATGTTTCCTGAAACCATGCTGGCTATCTGTCAGAATGTT
GGTGTTGTCAAGATGGGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050760-exon-scaffold_185-1491911889:4278..5643 | TCONS_00050760-exon-scaffold_185-1491911889:4278..5643 | Clytia hemisphaerica | exon |
| TCONS_00050760-exon-scaffold_185-1510915933:4278..5643 | TCONS_00050760-exon-scaffold_185-1510915933:4278..5643 | Clytia hemisphaerica | exon |
| TCONS_00050760-exon-scaffold_185-1575043694:4278..5643 | TCONS_00050760-exon-scaffold_185-1575043694:4278..5643 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:4278..5643 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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