TCONS_00050752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050752
Unique NameTCONS_00050752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050752 ID=TCONS_00050752|Name=TCONS_00050752|organism=Clytia hemisphaerica|type=transcript|length=819bp
TTAGAATCCATTTAGAATCTTTATTACCTAATAAAATGGATAAAAGCAAT
ACCTCAACGACACCCTGCTTACAAAATCATAATTCATCGAGGAAGATCTT
GTTTTGGAGAATTCTGAATTGCAttatgggaatattttttatGGTAGCCA
TGGGTTTACAGgcAAACGATCCTGACCCGGCTGTTTGGATGTTACTCTAC
GGAATCACCGGTGCTGTTTCATTTTCAATCGTCATTTCACCTTCCCTTCA
AGGTAAAAGATTATGGAGAATTTTCGTTGCCGTACATTTCGTTTGTTGCT
TAGCAATGCTTGCTTACGTCATCATGTTTTACAGTCACGTGATTGATAAA
TCATCAAATATTTTACATAACGAGGAAGGAAGagAACTTTCGGGAGTGAT
TTTGGTTCAACTTTGGTTGGCAATCATACTATCTGTGTCCATATATCACG
AgaaCATAAACAACTTGTTATTATATGAATGGTTTATTATCATGTCCGGT
GTGGCAGTTCCGCTGTTTTGCACTTTGTTTCTATACGGAAATATCGACCA
ATCGACATTACCGGACCATTGTAAAGGAATTCTGCAACGATGGGTGACAT
GAGGTCTGTGGATGACAATGTTCTTGAAGGAAAGTTGCTAAATGAAACAA
ACACAAACTAAAATTTCAGCAACTTTTAGTATTGACTGGAACAGCTGAAG
GAATAGTCATTAGGTTTAAAACTTAGCAATCAATCGTAGACTCTCAGAAA
TattttggtgtaatacacttatcAACACTGATCTTATCAACCATGAGACA
ATATTTTGAGAAAGGCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_185:24036..28501-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050752 ID=TCONS_00050752|Name=TCONS_00050752|organism=Clytia hemisphaerica|type=transcript|length=4466bp|location=Sequence derived from alignment at scaffold_185:24036..28501- (Clytia hemisphaerica)
TTAGAATCCATTTAGAATCTTTATTACCTAATAAAATGGATAAAAGCAAT
ACCTCAACGACACCCTGCTTACAAAATCATAATTCATCGAGGAAGATCTT
GTTTTGGAGAATTCTGAATTGCATTATGGGAATATTTTTTATGGTAGCCA
TGGGTTTACAGGTATCCATCCATTGAGTTTTGCTTTTTCTAAACCCCTCT
CTCATTTTACTGTTGAAGATCTTTAAGTGAGTCTTAATAAATTGAAAATA
TTTTTTTGCCAATAAATAATGAGTAAGGTTAGTCTGGTCTGGTTTCAAAA
CACTGGCTTTGCTAAAAAATTGCTAAATTTTTTTCAATTTTTTTCAATCC
TGGTCTAGCAAAAACAAAGCAATTTTTCATTTGATCGGGGGTTAGGGTTT
AGTGTACAATTCCAACGGCCCCCTGAATTTCAAGATTTCACATTTGACTA
ATATTTTAAATCTTTACCATTCTTTTTCAAATTTCAGGCAAACGATCCTG
ACCCGGCTGTTTGGATGGTATGATTCATATTTCTAAATATTCTTTTTATG
CAGTTTTCATTTCGAGTTATGGAGTAAAGTTGTTTACTGAAGGGACTAGA
AAAGTTGTTGGAGTTAAGGAGACGTTCGAGTTAAAGAGACTTCACTGTAG
TTGTTTTCATCCCGGGGGGGGGTTACTAGGTTTGCGAGGTGACGGGTATG
TCCGAGCCGAAAATCGAAAATCGACCCTTTGAGAGACAAAATTTTGGTGA
TTTTGGGACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAACTTTTTCCTAAATTTTGGTCCATTTT
TTCCAAATTTTGGTTTGATTTTCACCAAATTTTGGTCAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCC
CCCGGGGTTTTCATCGATAGCCCTGCTCACCAAGAAGTTGATTTTCTTCT
CTATTTTCCATCTTTATTCTCCAATTTTTTTCGAAATCTCCCATCGAACT
CAAAAGGGCTACATGTATTTTTATAAGAACAAACTATATAAGAACATATG
CGTCGATGGCAAAAAATATTAAGAACAAGTTAAAAACATTTTAAGGCTTT
ATGGACTCTAAAACACCCATTTTCTTAGGAAATTACACAAAATACTCACA
AAATGGTGCAAATAAGTATAGAGTATGTTAAGAACATTTTCAGGCTTAAA
ACTCAAAAAGTTAAGAAAACCCTAAGACTTCAAAAATTTTGGATGAGCTC
TACACGTGTATGTTTATTCGAATCCTGGCAAAATCTACAGTTCCAGATGC
AGATTATTCTGGATTATTATGAGCAAAACTATGATTTTTCAGTTACTCTA
CGGAATCACCGGTGCTGTTTCATTTTCAATCGTCATTTCACCTTCCCTTC
AAGGTTAGTTTTTGTCCCGGTTTTTCTTCACTAGATCTGACAAGTTAACA
TTTTTAAACGACGCTAAAATGATTTTTTAGTCATTCCTGACATGATTGTT
GACCTCTGTGCCAAAATTTCATCTTTGCATCATTTTTGTCTTGGTAGATA
TATAATTACACCAGAATATGTGTTTGCCAACTTGGTGAGAGAGAAACTGT
CGAATCCAAATCTCTTTGTCTCCTCAATGTTGCTCAACTCAAGGCACAGC
TACAAAGCTACTGGAAGTACTACTACTATTTTAAACACCCCTGTCTCACT
GTCCAACCGAATTTCGGCAACAATTCAACAGGGTTGAATAATAACAAAAT
AATCATAAACTGTCATCTTTTTATACAGGTAAAAGATTATGGAGAATTTT
CGTTGCCGTACATTTCGTTTGTTGCTTAGCAATGCTTGCTTACGTCATCA
TGTTTTACAGTCACGTGATTGATAAATCATCAAATATTTTACATAACGAG
GAAGGAAGGTAATGTTGAAATGCTAAATTCGGCACTATTATTTTTAGAGG
GCTGTAACTTCTGGTCCAAAAGATATTAAAACTGAATACAGATTTTAAAT
CGGCGTGCGAGGTTAAAAATTTCAGAAAAGTATAAATTGACGAGGAAAAA
AGCTTCTTTTTTTACTTCTTAATTTTTCATTTTCGTTTTTCGTTTTTGAA
AACTTGAATTGATCCATCCTAGAAATGTGTCAGAATTTGTAATTTGCTAA
TTTGCTAATTTTGGGATATTGATATTTCCACGTCAAAATAATCATTTTTA
TCGATCTTCAATTTTAGAGAACTTTCGGGAGTGATTTTGGTTCAACTTTG
GTTGGCAATCATACTATCTGTGTCCATATATCACGAGAAGTAAAAGTTTT
TTTTCTTTTTTACAGAAAAACTTTTTTCCGAAGGCATTGTATCGTGCTTT
TTAATAGTCAGAATTGCAATTTTTTACAGACTTCTACAACCACAGGTAGT
ATGGCAGCACTGAGCTGTTAGAGTATGCCAGGAGCCTAGCTTTCTATAAT
ATATGCAACTTTTAGTATAATGATTGAGTTCAAAGGTGTATAAGCTCAGA
ATGTTTCAAATATAAAACTTTTCGGAATACCAGGTTTCATTTAAAAGACA
GCTATCTTTTTCGTGGCGTCTGGCTGGTATCTAACCTCGGTTTCAATGCA
AGAATTAGGGTTTGTTTTTAAGTTTCTAACTATATCCTTCCTTTTAAGGA
TAAGGGAATGTTGTGGTNAATTAAAAGACAGCTATCTTTTTCAAGCCGTC
TGGCGGGTATGCTAACCTCGGTTTCAATGCAAGAATTAGGGTTTGTTTTT
AAGTTTCTAACTATATCCTTCCTTTTAAGGATAAGGGAATGTTGTGGTCG
TAGCAGGGAATCGAACAACGTTCAAATGGGTAAAAAATTCCTCCATTTTT
TGTCAAACAACTTTTTATGTTGGGTACTGTCTCTTATGAAATTCCGCAGA
GGTTAATACATGTTTTTTTATAAACCTACCAAAATTTGAAAACAGGCTCG
GAGTTACTTAACTGAAGCTCTCGACAGCTTGATAAGGCTAAAAAATGCCG
AAAATCCGTAAAATCACAGCTAAAAACAGCCAAAATACATTTTTTCGTAA
GGTGATGCTTGACCTATGCATAAATTTTTGCCATATCCGCGAGCCCAGAT
ATGCTTATAAGTAATGCAATGCTTACAAAAAACATGTATTCACCGGGGAG
CAAAAGAAGTCGTTTTCTTTATTTGGTATACCTTATTGGGGAAAAAATGT
CGGAGTTTTAGTTAATTTTAGTCGGGTTTTTTTTTCGTCGGAGAAAAATT
TCGTCACCTAGAGGCATATTCGTCACTTTTCCCCGACCAAAATTTCAAAT
TTGTCACTTTCACCCGACTAAACTGTCCAAAANATTGGGGAAAAAAATGT
CGGAGTTTTAGTTAATTTTAGTCGGGTTTTTTTTTCGTCGGAGAAAAATT
TCGTCACCTAGAGGCATATTCGTCATTTTTCCCCGCGACCAAAATTTCAA
ATTTGTCACTTTCACCCGACTAAACTGTCCAAAAGAAATGGTTTCCTTCA
CTAGCTCGAAAATGTATCTTGTAATTCGACGTAAAGCACTAATTTTGGTA
AATAAAGGTGTAAAAAATTAGATTTGAATTTGGTTGCGGTATCATAAAAT
TTCGGGTAAATGTTTTAGTCAGGGATAAAAAAATTGGCTACAAGTTTTGG
TCGGGTGATGAAATGTCGGGGAAATATTTCGTCACCCCCTCAAAATTTTC
GTCACTTTCCCCCGACATTTTTTCCCCGATGAGGTATAACAAAAGGACTG
ATTGGCTTTTTGCAAAGGATTTGCCGGGTTTAGGTTCTCTTGAGTAACAA
ATCCTAATTGTCAAGGTTGTAGATTTGAGCCCGACGCTAATAAAGTTGGG
CTTAAAAGTTAAAACCGAGGTTAGATTTTAATGACCCAAATGATAAATAT
GGCTTTTAGGCTCTAACTCAAAACAAATTTTTTCTCAATTCATCTTTTCA
GCATAAACAACTTGTTATTATATGAATGGTTTATTATCATGTCCGGTGTG
GCAGTTCCGCTGTTTTGCACTTTGTTTCTATACGGAAATATCGACCAATC
GACATTACCGGACCATTGTAAAGGAATTCTGCAACGATGGGTGACATGAG
GTCTGTGGATGACAATGTTCTTGAAGGAAAGTTGCTAAATGAAACAAACA
CAAACTAAAATTTCAGCAACTTTTAGTATTGACTGGAACAGCTGAAGGAA
TAGTCATTAGGTTTAAAACTTAGCAATCAATCGTAGACTCTCAGAAATAT
TTTGGTGTAATACACTTATCAACACTGATCTTATCAACCATGAGACAATA
TTTTGAGAAAGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032145XLOC_032145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050752-exon-scaffold_185-1575043694:28341..28501TCONS_00050752-exon-scaffold_185-1575043694:28341..28501Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1575043694:27985..28014TCONS_00050752-exon-scaffold_185-1575043694:27985..28014Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1575043694:26949..27009TCONS_00050752-exon-scaffold_185-1575043694:26949..27009Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1575043694:26444..26573TCONS_00050752-exon-scaffold_185-1575043694:26444..26573Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1575043694:26063..26134TCONS_00050752-exon-scaffold_185-1575043694:26063..26134Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1575043694:24036..24400TCONS_00050752-exon-scaffold_185-1575043694:24036..24400Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1510915933:28341..28501TCONS_00050752-exon-scaffold_185-1510915933:28341..28501Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1510915933:27985..28014TCONS_00050752-exon-scaffold_185-1510915933:27985..28014Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1510915933:26949..27009TCONS_00050752-exon-scaffold_185-1510915933:26949..27009Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1510915933:26444..26573TCONS_00050752-exon-scaffold_185-1510915933:26444..26573Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1510915933:26063..26134TCONS_00050752-exon-scaffold_185-1510915933:26063..26134Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1510915933:24036..24400TCONS_00050752-exon-scaffold_185-1510915933:24036..24400Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1491911889:28341..28501TCONS_00050752-exon-scaffold_185-1491911889:28341..28501Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1491911889:27985..28014TCONS_00050752-exon-scaffold_185-1491911889:27985..28014Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1491911889:26949..27009TCONS_00050752-exon-scaffold_185-1491911889:26949..27009Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1491911889:26444..26573TCONS_00050752-exon-scaffold_185-1491911889:26444..26573Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1491911889:26063..26134TCONS_00050752-exon-scaffold_185-1491911889:26063..26134Clytia hemisphaericaexon
TCONS_00050752-exon-scaffold_185-1491911889:24036..24400TCONS_00050752-exon-scaffold_185-1491911889:24036..24400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:24036..28501 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.065852	0.193278	0.258944	0	1.09607	0.504017	1.41253	0.842339	0.000159819	0	2.32475	1.77269	0.852824	1.40595	0.417939	0.958963	2.21461	1.07296	1.41636	1.40012	0	0.57328	1.47728	2.83621	0.367289	0.218015	0	0
Blast
[Close]
BLAST of TCONS_00050752 vs. Swiss-Prot (Human)
Match: TM220 (Transmembrane protein 220 OS=Homo sapiens GN=TMEM220 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.100e-18
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 3 
Query:  102 FWRILNCIMGIFFMVAMGLQANDPDPAVWMLLYGITGAVSFSIVISPSLQGKRLWRIFVAVHFVCCLAMLAYVIMFYSHVIDKS-SNILHNEEGRELSGVILVQLWLAIILSVSIYHENINNLLLYEWFIIMSGVAVPLFCTLFLYGNID-QSTLPDHCKGIL 584
             WR  N +M  FF +A  +Q NDPD  VW+++Y I   ++  + ++P + G  +W+   A+H + C     + +   S+++ ++  NILH EEGRELSG++++  W  IIL  S     +   +     I+++    P    +++Y N + +S+ P HCK ++
Sbjct:    5 LWRACNGLMAAFFALAALVQVNDPDAEVWVVVYTIPAVLTLLVGLNPEVTGNVIWKSISAIHILFC---TVWAVGLASYLLHRTQQNILHEEEGRELSGLVIITAW--IILCHSSSKNPVGGRIQLAIAIVIT--LFPFISWVYIYINKEMRSSWPTHCKTVI 160
The following BLAST results are available for this feature:
BLAST of TCONS_00050752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2208.100e-1830.06Transmembrane protein 220 OS=Homo sapiens GN=TMEM2... [more]
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