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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050744 ID=TCONS_00050744|Name=TCONS_00050744|organism=Clytia hemisphaerica|type=transcript|length=1805bp
CTAGAGTGGAGAAATGCTCAAATGAACATCAAACACATCATCataaaagt
tgttttttattaCCTTAATTTGTGGTGACGACATCAACAGAAAAAGAAGG
AAGTAATTATTGGAACatacactttcgttttcattcaaaacaaaGCCTTG
TCAATCCAACATGAAAACAACACGTTTTCTATTTGAACCATCGAGGCAAA
TATTTCCTAGAAATCGAGCAAAACCAAAACGAAGGATCCcgattagccaa
tcagatttccACACGGCTTTTCTCATGCGTGCGCATAATGGCAGATTTTT
CCATAAACATCCACGTTCGCAGTGTCGTTCTATTACAAATTCAAGCAGTC
AAGTTGCACTTGCAGTTGAACACAACTTGGTCTAAAAATTCAACACATAC
AAAATGAAGTGTTTACTTCTGTTAGGTCTTTTCGTTTTCGCACATTGCGA
agttaaagaagaaaaagatgtCTTAGTTGCTACAACTGATAACTGGGATG
AAGTTGTCAATGACGGAACCACtgttttggttgaattttATGCGCCATGG
TGTGGACACTGCAAATCTTTGGAACCAGAATATGCTAAAGCTGCCactaa
attgaaagaagaaGGATCAGAAGTCAAATTGGCCAAAGTTGATGCCACTA
TTGAAACCAAATTGGCTGAAAAATTTGGAGTCCAAGgtttcccaactttg
aaattcttcaaaaaaggAGCTGCTCTTGAATATGGAGGTGGAAGAACTGA
AAATGAAATCGTCAACTGGCTTAAGAAAAAGACTGGCCCACCAGCCACTG
AATTGGCTGATGCTGAAGCTGTCAAAAAATTCACTGATGCTCGTGATGTT
GCTGTTGTCGGTTTCTTCAATGACCGTGAGAGTGAACTTGCCAAAGCTTT
CATCAAGGCTGCTGACGCTATTGACAGCATTGAATTTGGTATTGCTGCCC
CATCCTCATCTGGAGACTTGGCTGTCACTGGGGACAAAATTGTTTTGACC
AAAAAGTTTGATGACAAACGTGCAGATTACACTGGAGAAGCAAAATCTGA
AGACATTGCTGCTTTTGCTAAATCTGAATCTATTGCCCTTGTTACCGAAT
TCACTGATGAAGCTGCACCAAAGATCTTCGGTGGAGATATCAAATCACAC
ATCCTATTGTTCATTAGCAAGAAGGCAGAAAACTTCGCTTCCACTATTGA
AACATTCACTGAAACTGCCAAAGCTTTTAAAGGAAAGGTATTGTTCATCT
ACATTGATACTGATGTCGAAGACAATGGACGTATCTTGGAATTCTTTGGA
CTTAAAGCTGCTGATGCACCAACTATGAGACTTATCAAATTGGAAGGAGA
CATGACCAAATTCGTTCCAGAATCAAATGAACTTTCAGTTGAAAAAATCA
CATCTTTCGTTCAAGCCTATTTGGATGGAACCTTGAAACCATTCTTGATG
AGCGCTGACATCCCAGAAGATTGGGACAAAAACCCAGTCAAGGTTCTCGT
CGGAAAGAACTTCAAGGAAGTCGCCATGTCAGCAGAAAAGAATGTCTTAG
TTgaattttacgCACCATGGTGTGGCCACTGCAAACAATTGGTTCCAATC
TGGGACAAACTTGGAGAAAAATTTAAAGACTCTGCTGATATTGTCATTGC
TAAGATGGACTCGACTGCCAACGAAGTTGAAGAAGTCAAAGTTCAATCTT
TCCCAACTATCAAATATTTTCCCAAAGAAGGAGGAGTAAGTGTTAATTAT
TATATGGAAGATTTTTAATGTTCGTAGTGGGATctacagtacacgttttt
ttttt Run BLAST on NCBI protein sequence of TCONS_00050744-protein >TCONS_00050744-protein ID=TCONS_00050744-protein|Name=TCONS_00050744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MKCLLLLGLFVFAHCEVKEEKDVLVATTDNWDEVVNDGTTVLVEFYAPWC
GHCKSLEPEYAKAATKLKEEGSEVKLAKVDATIETKLAEKFGVQGFPTLK
FFKKGAALEYGGGRTENEIVNWLKKKTGPPATELADAEAVKKFTDARDVA
VVGFFNDRESELAKAFIKAADAIDSIEFGIAAPSSSGDLAVTGDKIVLTK
KFDDKRADYTGEAKSEDIAAFAKSESIALVTEFTDEAAPKIFGGDIKSHI
LLFISKKAENFASTIETFTETAKAFKGKVLFIYIDTDVEDNGRILEFFGL
KAADAPTMRLIKLEGDMTKFVPESNELSVEKITSFVQAYLDGTLKPFLMS
ADIPEDWDKNPVKVLVGKNFKEVAMSAEKNVLVEFYAPWCGHCKQLVPIW
DKLGEKFKDSADIVIAKMDSTANEVEEVKVQSFPTIKYFPKEGGVSVNYY
MEDF Run BLAST on NCBI transcript from alignment at scaffold_185:243509..246050+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050744 ID=TCONS_00050744|Name=TCONS_00050744|organism=Clytia hemisphaerica|type=transcript|length=2542bp|location=Sequence derived from alignment at scaffold_185:243509..246050+ (Clytia hemisphaerica)
CTAGAGTGGAGAAATGCTCAAATGAACATCAAACACATCATCataaaagt
tgttttttattaCCTTAATTTGTGGTGACGACATCAACAGAAAAAGAAGG
AAGTAATTATTGGAACatacactttcgttttcattcaaaacaaaGCCTTG
TCAATCCAACATGAAAACAACACGTTTTCTATTTGAACCATCGAGGCAAA
TATTTCCTAGAAATCGAGCAAAACCAAAACGAAGGATCCcgattagccaa
tcagatttccACACGGCTTTTCTCATGCGTGCGCATAATGGCAGATTTTT
CCATAAACATCCACGTTCGCAGTGTCGTTCTATTACAAATTCAAGCAGTC
AAGTTGCACTTGCAGTTGAACACAACTTGGTCTAAAAATTCAACACATAC
AAAATGAAGTGTTTACTTCTGTTAGGTCTTTTCGTTTTCGCACATTGCGA
agttaaagaagaaaaagatgtCTTAGTTGCTACAACTGATAACTGGGATG
AAGTTGTCAATGACGGAACCACtgttttggttgaattttgtaAGTAGCTA
CAGATATTTTCCGTTGAAAACGCCCTCTTATTTTTTGTTAGATATCTTGA
TCACAACTGCGTCCCTGTAAGCAAACTAGTTAGATGactttataaaattg
ttttttatggAGCCTTTAATAGGACTATTATATGGTCAGAAAGATAGTTG
ATAGCAAAATAAAGATTACAAATAAAAGAGGTGTGTCTGTATAGCCCACA
TCTCACTTTTTGGCCTAAACAAAAAGCAGTAGGTATTCCTCTTGATAAAC
CTTGTCTTGAGCGTATTCTCTCCATTCAGTTTTATGCAGCCTATTTTGTG
TTATCAGAAAATCAATGTCATGAttatattttcactttttattgactttt
tttaGATGCGCCATGGTGTGGACACTGCAAATCTTTGGAACCAGAATATG
CTAAAGCTGCCactaaattgaaagaagaaGGATCAGAAGTCAAATTGGCC
AAAGTTGATGCCACTATTGAAACCAAATTGGCTGAAAAATTTGGAGTCCA
AGgtttcccaactttgaaattcttcaaaaaaggAGCTGCTCTTGAATATG
GAGGTGGAAGAACTGAAAATGAAATCGTCAACTGGCTTAAGAAAAAGACT
GGCCCACCAGCCACTGAATTGGCTGATGCTGAAGCTGTCAAAAAATTCAC
TGATGCTCGTGATGTTGCTGTTGTCGGTTTCTTCAATGACCGTGAGAGTG
AACTTGCCAAAGCTTTCATCAAGGCTGCTGACGCTATTGACAGCATTGAA
TTTGGTATTGCTGCCCCATCCTCATCTGGAGACTTGGCTGTCACTGGGGA
CAAAATTGTTTTGACCAAAAAGTTTGATGACAAACGTGCAGATTACACTG
GAGAAGCAAAATCTGAAGACATTGCTGCTTTTGCTAAATCTGAATCTATT
GCCCTTGTTACCGAATTCACTGATGAAGCTGCACCAAAGATCTTCGGTGG
AGATATCAAATCACACATCCTATTGTTCATTAGCAAGAAGGCAGAAAACT
TCGCTTCCACTATTGAAACGTAAGACTTGGATTAATTTTCTTTGATATGT
TTCTGGGTGAAATTTTGTCTCAATAACATTAGAACTTTGCTTCCACTATT
GAAACGTAAGACTTGGATTAATTTTCTTTCGTATGTTTCTGGGTGAAATT
TTGTCTCGATAACATTAGAAATTCAAGGTGAATTTGTAAAAATCAACTCA
ACTAGGACGATGTCATTATGgttttaatatttaatatttgctttattttc
aGATTCACTGAAACTGCCAAAGCTTTTAAAGGAAAGGTATTGTTCATCTA
CATTGATACTGATGTCGAAGACAATGGACGTATCTTGGAATTCTTTGGAC
TTAAAGCTGCTGATGCACCAACTATGAGACTTATCAAATTGGAAGGAGAC
ATGACCAAATTCGTTCCAGAATCAAATGAACTTTCAGTTGAAAAAATCAC
ATCTTTCGTTCAAGCCTATTTGGATGGAACCTTGAAACCATTCTTGATGA
GCGCTGACATCCCAGAAGATTGGGACAAAAACCCAGTCAAGGTTCTCGTC
GGAAAGAACTTCAAGGAAGTCGCCATGTCAGCAGAAAAGAATGTCTTAGT
TgaattttgtaagtattttccATCCCTTCACTATTTGCAAACATTAAAAT
GATTAAGTGAAAGTCCTGAATTGAGAAGAGAGTTATTGAAGATactatat
attattttatggACTTCCATTTCgaatttatgttttttatttttagacgC
ACCATGGTGTGGCCACTGCAAACAATTGGTTCCAATCTGGGACAAACTTG
GAGAAAAATTTAAAGACTCTGCTGATATTGTCATTGCTAAGATGGACTCG
ACTGCCAACGAAGTTGAAGAAGTCAAAGTTCAATCTTTCCCAACTATCAA
ATATTTTCCCAAAGAAGGAGGAGTAAGTGTTAATTATTATATGGAAGATT
TTTAATGTTCGTAGTGGGATctacagtacacgtttttttttt Coding sequence (CDS) from alignment at scaffold_185:243509..246050+ >TCONS_00050744 ID=TCONS_00050744|Name=TCONS_00050744|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_185:243509..246050+ (Clytia hemisphaerica)
ATGAAGTGTTTACTTCTGTTAGGTCTTTTCGTTTTCGCACATTGCGAagt
taaagaagaaaaagatgtCTTAGTTGCTACAACTGATAACTGGGATGAAG
TTGTCAATGACGGAACCACtgttttggttgaattttATGCGCCATGGTGT
GGACACTGCAAATCTTTGGAACCAGAATATGCTAAAGCTGCCactaaatt
gaaagaagaaGGATCAGAAGTCAAATTGGCCAAAGTTGATGCCACTATTG
AAACCAAATTGGCTGAAAAATTTGGAGTCCAAGgtttcccaactttgaaa
ttcttcaaaaaaggAGCTGCTCTTGAATATGGAGGTGGAAGAACTGAAAA
TGAAATCGTCAACTGGCTTAAGAAAAAGACTGGCCCACCAGCCACTGAAT
TGGCTGATGCTGAAGCTGTCAAAAAATTCACTGATGCTCGTGATGTTGCT
GTTGTCGGTTTCTTCAATGACCGTGAGAGTGAACTTGCCAAAGCTTTCAT
CAAGGCTGCTGACGCTATTGACAGCATTGAATTTGGTATTGCTGCCCCAT
CCTCATCTGGAGACTTGGCTGTCACTGGGGACAAAATTGTTTTGACCAAA
AAGTTTGATGACAAACGTGCAGATTACACTGGAGAAGCAAAATCTGAAGA
CATTGCTGCTTTTGCTAAATCTGAATCTATTGCCCTTGTTACCGAATTCA
CTGATGAAGCTGCACCAAAGATCTTCGGTGGAGATATCAAATCACACATC
CTATTGTTCATTAGCAAGAAGGCAGAAAACTTCGCTTCCACTATTGAAAC
ATTCACTGAAACTGCCAAAGCTTTTAAAGGAAAGGTATTGTTCATCTACA
TTGATACTGATGTCGAAGACAATGGACGTATCTTGGAATTCTTTGGACTT
AAAGCTGCTGATGCACCAACTATGAGACTTATCAAATTGGAAGGAGACAT
GACCAAATTCGTTCCAGAATCAAATGAACTTTCAGTTGAAAAAATCACAT
CTTTCGTTCAAGCCTATTTGGATGGAACCTTGAAACCATTCTTGATGAGC
GCTGACATCCCAGAAGATTGGGACAAAAACCCAGTCAAGGTTCTCGTCGG
AAAGAACTTCAAGGAAGTCGCCATGTCAGCAGAAAAGAATGTCTTAGTTg
aattttacgCACCATGGTGTGGCCACTGCAAACAATTGGTTCCAATCTGG
GACAAACTTGGAGAAAAATTTAAAGACTCTGCTGATATTGTCATTGCTAA
GATGGACTCGACTGCCAACGAAGTTGAAGAAGTCAAAGTTCAATCTTTCC
CAACTATCAAATATTTTCCCAAAGAAGGAGGAGTAAGTGTTAATTATTAT
ATGGAAGATTTTTAAATGAAGTGTTTACTTCTGTTAGGTCTTTTCGTTTT
CGCACATTGCGAagttaaagaagaaaaagatgtCTTAGTTGCTACAACTG
ATAACTGGGATGAAGTTGTCAATGACGGAACCACtgttttggttgaattt
tATGCGCCATGGTGTGGACACTGCAAATCTTTGGAACCAGAATATGCTAA
AGCTGCCactaaattgaaagaagaaGGATCAGAAGTCAAATTGGCCAAAG
TTGATGCCACTATTGAAACCAAATTGGCTGAAAAATTTGGAGTCCAAGgt
ttcccaactttgaaattcttcaaaaaaggAGCTGCTCTTGAATATGGAGG
TGGAAGAACTGAAAATGAAATCGTCAACTGGCTTAAGAAAAAGACTGGCC
CACCAGCCACTGAATTGGCTGATGCTGAAGCTGTCAAAAAATTCACTGAT
GCTCGTGATGTTGCTGTTGTCGGTTTCTTCAATGACCGTGAGAGTGAACT
TGCCAAAGCTTTCATCAAGGCTGCTGACGCTATTGACAGCATTGAATTTG
GTATTGCTGCCCCATCCTCATCTGGAGACTTGGCTGTCACTGGGGACAAA
ATTGTTTTGACCAAAAAGTTTGATGACAAACGTGCAGATTACACTGGAGA
AGCAAAATCTGAAGACATTGCTGCTTTTGCTAAATCTGAATCTATTGCCC
TTGTTACCGAATTCACTGATGAAGCTGCACCAAAGATCTTCGGTGGAGAT
ATCAAATCACACATCCTATTGTTCATTAGCAAGAAGGCAGAAAACTTCGC
TTCCACTATTGAAACATTCACTGAAACTGCCAAAGCTTTTAAAGGAAAGG
TATTGTTCATCTACATTGATACTGATGTCGAAGACAATGGACGTATCTTG
GAATTCTTTGGACTTAAAGCTGCTGATGCACCAACTATGAGACTTATCAA
ATTGGAAGGAGACATGACCAAATTCGTTCCAGAATCAAATGAACTTTCAG
TTGAAAAAATCACATCTTTCGTTCAAGCCTATTTGGATGGAACCTTGAAA
CCATTCTTGATGAGCGCTGACATCCCAGAAGATTGGGACAAAAACCCAGT
CAAGGTTCTCGTCGGAAAGAACTTCAAGGAAGTCGCCATGTCAGCAGAAA
AGAATGTCTTAGTTgaattttacgCACCATGGTGTGGCCACTGCAAACAA
TTGGTTCCAATCTGGGACAAACTTGGAGAAAAATTTAAAGACTCTGCTGA
TATTGTCATTGCTAAGATGGACTCGACTGCCAACGAAGTTGAAGAAGTCA
AAGTTCAATCTTTCCCAACTATCAAATATTTTCCCAAAGAAGGAGGAGTA
AGTGTTAATTATTATATGGAAGATTTTTAAATGAAGTGTTTACTTCTGTT
AGGTCTTTTCGTTTTCGCACATTGCGAagttaaagaagaaaaagatgtCT
TAGTTGCTACAACTGATAACTGGGATGAAGTTGTCAATGACGGAACCACt
gttttggttgaattttATGCGCCATGGTGTGGACACTGCAAATCTTTGGA
ACCAGAATATGCTAAAGCTGCCactaaattgaaagaagaaGGATCAGAAG
TCAAATTGGCCAAAGTTGATGCCACTATTGAAACCAAATTGGCTGAAAAA
TTTGGAGTCCAAGgtttcccaactttgaaattcttcaaaaaaggAGCTGC
TCTTGAATATGGAGGTGGAAGAACTGAAAATGAAATCGTCAACTGGCTTA
AGAAAAAGACTGGCCCACCAGCCACTGAATTGGCTGATGCTGAAGCTGTC
AAAAAATTCACTGATGCTCGTGATGTTGCTGTTGTCGGTTTCTTCAATGA
CCGTGAGAGTGAACTTGCCAAAGCTTTCATCAAGGCTGCTGACGCTATTG
ACAGCATTGAATTTGGTATTGCTGCCCCATCCTCATCTGGAGACTTGGCT
GTCACTGGGGACAAAATTGTTTTGACCAAAAAGTTTGATGACAAACGTGC
AGATTACACTGGAGAAGCAAAATCTGAAGACATTGCTGCTTTTGCTAAAT
CTGAATCTATTGCCCTTGTTACCGAATTCACTGATGAAGCTGCACCAAAG
ATCTTCGGTGGAGATATCAAATCACACATCCTATTGTTCATTAGCAAGAA
GGCAGAAAACTTCGCTTCCACTATTGAAACATTCACTGAAACTGCCAAAG
CTTTTAAAGGAAAGGTATTGTTCATCTACATTGATACTGATGTCGAAGAC
AATGGACGTATCTTGGAATTCTTTGGACTTAAAGCTGCTGATGCACCAAC
TATGAGACTTATCAAATTGGAAGGAGACATGACCAAATTCGTTCCAGAAT
CAAATGAACTTTCAGTTGAAAAAATCACATCTTTCGTTCAAGCCTATTTG
GATGGAACCTTGAAACCATTCTTGATGAGCGCTGACATCCCAGAAGATTG
GGACAAAAACCCAGTCAAGGTTCTCGTCGGAAAGAACTTCAAGGAAGTCG
CCATGTCAGCAGAAAAGAATGTCTTAGTTgaattttacgCACCATGGTGT
GGCCACTGCAAACAATTGGTTCCAATCTGGGACAAACTTGGAGAAAAATT
TAAAGACTCTGCTGATATTGTCATTGCTAAGATGGACTCGACTGCCAACG
AAGTTGAAGAAGTCAAAGTTCAATCTTTCCCAACTATCAAATATTTTCCC
AAAGAAGGAGGAGTAAGTGTTAATTATTATATGGAAGATTTTTAAATGAA
GTGTTTACTTCTGTTAGGTCTTTTCGTTTTCGCACATTGCGAagttaaag
aagaaaaagatgtCTTAGTTGCTACAACTGATAACTGGGATGAAGTTGTC
AATGACGGAACCACtgttttggttgaattttATGCGCCATGGTGTGGACA
CTGCAAATCTTTGGAACCAGAATATGCTAAAGCTGCCactaaattgaaag
aagaaGGATCAGAAGTCAAATTGGCCAAAGTTGATGCCACTATTGAAACC
AAATTGGCTGAAAAATTTGGAGTCCAAGgtttcccaactttgaaattctt
caaaaaaggAGCTGCTCTTGAATATGGAGGTGGAAGAACTGAAAATGAAA
TCGTCAACTGGCTTAAGAAAAAGACTGGCCCACCAGCCACTGAATTGGCT
GATGCTGAAGCTGTCAAAAAATTCACTGATGCTCGTGATGTTGCTGTTGT
CGGTTTCTTCAATGACCGTGAGAGTGAACTTGCCAAAGCTTTCATCAAGG
CTGCTGACGCTATTGACAGCATTGAATTTGGTATTGCTGCCCCATCCTCA
TCTGGAGACTTGGCTGTCACTGGGGACAAAATTGTTTTGACCAAAAAGTT
TGATGACAAACGTGCAGATTACACTGGAGAAGCAAAATCTGAAGACATTG
CTGCTTTTGCTAAATCTGAATCTATTGCCCTTGTTACCGAATTCACTGAT
GAAGCTGCACCAAAGATCTTCGGTGGAGATATCAAATCACACATCCTATT
GTTCATTAGCAAGAAGGCAGAAAACTTCGCTTCCACTATTGAAACATTCA
CTGAAACTGCCAAAGCTTTTAAAGGAAAGGTATTGTTCATCTACATTGAT
ACTGATGTCGAAGACAATGGACGTATCTTGGAATTCTTTGGACTTAAAGC
TGCTGATGCACCAACTATGAGACTTATCAAATTGGAAGGAGACATGACCA
AATTCGTTCCAGAATCAAATGAACTTTCAGTTGAAAAAATCACATCTTTC
GTTCAAGCCTATTTGGATGGAACCTTGAAACCATTCTTGATGAGCGCTGA
CATCCCAGAAGATTGGGACAAAAACCCAGTCAAGGTTCTCGTCGGAAAGA
ACTTCAAGGAAGTCGCCATGTCAGCAGAAAAGAATGTCTTAGTTgaattt
tacgCACCATGGTGTGGCCACTGCAAACAATTGGTTCCAATCTGGGACAA
ACTTGGAGAAAAATTTAAAGACTCTGCTGATATTGTCATTGCTAAGATGG
ACTCGACTGCCAACGAAGTTGAAGAAGTCAAAGTTCAATCTTTCCCAACT
ATCAAATATTTTCCCAAAGAAGGAGGAGTAAGTGTTAATTATTATATGGA
AGATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050744-exon-scaffold_185-1491911889:243509..244047 | TCONS_00050744-exon-scaffold_185-1491911889:243509..244047 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1510915933:243509..244047 | TCONS_00050744-exon-scaffold_185-1510915933:243509..244047 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1575043694:243509..244047 | TCONS_00050744-exon-scaffold_185-1575043694:243509..244047 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1491911889:244414..245077 | TCONS_00050744-exon-scaffold_185-1491911889:244414..245077 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1510915933:244414..245077 | TCONS_00050744-exon-scaffold_185-1510915933:244414..245077 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1575043694:244414..245077 | TCONS_00050744-exon-scaffold_185-1575043694:244414..245077 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1491911889:245311..245666 | TCONS_00050744-exon-scaffold_185-1491911889:245311..245666 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1510915933:245311..245666 | TCONS_00050744-exon-scaffold_185-1510915933:245311..245666 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1575043694:245311..245666 | TCONS_00050744-exon-scaffold_185-1575043694:245311..245666 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1491911889:245805..246050 | TCONS_00050744-exon-scaffold_185-1491911889:245805..246050 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1510915933:245805..246050 | TCONS_00050744-exon-scaffold_185-1510915933:245805..246050 | Clytia hemisphaerica | exon |
| TCONS_00050744-exon-scaffold_185-1575043694:245805..246050 | TCONS_00050744-exon-scaffold_185-1575043694:245805..246050 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:243509..246050 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016853 | isomerase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005783 | endoplasmic reticulum |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045454 | cell redox homeostasis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0045454 |
cell redox homeostasis |
| cellular_component |
GO:0005783 |
endoplasmic reticulum |
| molecular_function |
GO:0016853 |
isomerase activity |
Blast
BLAST of TCONS_00050744 vs. Swiss-Prot (Human)
Match: PDIA1 (Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3) HSP 1 Score: 486.493 bits (1251), Expect = 1.474e-165 Identity = 247/437 (56.52%), Postives = 316/437 (72.31%), Query Frame = 2
Query: 455 KEEKDVLVATTDNWDEVVNDGTTVLVEFYAPWCGHCKSLEPEYAKAATKLKEEGSEVKLAKVDATIETKLAEKFGVQGFPTLKFFKKG---AALEYGGGRTENEIVNWLKKKTGPPATELADAEAVKKFTDARDVAVVGFFNDRESELXXXXXXXXXXXXSIEFGIAAPSSS-GDLAVTGDKIVLTKKFDDKRADYTGEAKSEDIAAFAKSESIALVTEFTDEAAPKIFGGDIKSHILLFISKKAENFASTIETFTETAKAFKGKVLFIYIDTDVEDNGRILEFFGLKAADAPTMRLIKLEGDMTKFVPESNELSVEKITSFVQAYLDGTLKPFLMSADIPEDWDKNPVKVLVGKNFKEVAMSAEKNVLVEFYAPWCGHCKQLVPIWDKLGEKFKDSADIVIAKMDSTANEVEEVKVQSFPTIKYFPKEGGVSVNYY 1753
+EE VLV N+ E + +LVEFYAPWCGHCK+L PEYAKAA KLK EGSE++LAKVDAT E+ LA+++GV+G+PT+KFF+ G + EY GR ++IVNWLKK+TGP AT L D A + ++ +VAV+GFF D ES+ AK F++AA+AID I FGI + S + D +VL KKFD+ R ++ GE E++ F K + LV EFT++ APKIFGG+IK+HILLF+ K ++ + F A++FKGK+LFI+ID+D DN RILEFFGLK + P +RLI LE +MTK+ PES EL+ E+IT F +L+G +KP LMS ++PEDWDK PVKVLVGKNF++VA +KNV VEFYAPWCGHCKQL PIWDKLGE +KD +IVIAKMDSTANEVE VKV SFPT+K+FP +V Y
Sbjct: 21 EEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDY 457
The following BLAST results are available for this feature:
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