TCONS_00050698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050698
Unique NameTCONS_00050698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050698 ID=TCONS_00050698|Name=TCONS_00050698|organism=Clytia hemisphaerica|type=transcript|length=997bp
ATAATGGACAATCAAAGTCAGTTATTTTGGTATTAGATGAATTTGATTTG
TTTGCCTACCATAAAAACCAATCGTTACTTTACAACTTGTTTGACATTGC
CCAAAGTAAACAAAACCCATTATGTGTCATTGGCCTGACTTGTAGACTTG
ATGTGGTTGAGTTGTTGGAAAAACGAGTGAAATCAAGATATTCACACAGA
GCTATATTGACATTTCCATCTTATagttttGAAGAATATGTAGACATTGT
AAGCTCCTTTCTAAAACTATCAGAAGATTTTCCTTGTAAAAAGTTCAAGG
ACAGATGGAATCGTAATTTAGATgaaaatcttTCTGAAAGTTCAGTATGT
TGTGAAATACTTTTGAAACAGTATAATCTACAAAAGGATTTTCAAAGTCT
CATACGTCTCTTGACACCTGTTGTGTATGGAATCTCAAACAAAAAGCCCT
TCATATCAAACACAGACTTTGTGGAAGCATATACATCACTTCACATCGAT
AGCAAAACAGCTTTGTTAAATGGACTTTCAACTCTTGAGTTAAGTTTATT
GGTAGCAGCAAAGCACGTCTTTAACCGAAGAGAAGGACAACCTTTCAATT
ACGAAATGGTGTATAATGAgtatgaaaactttttgaagcgTAGATTATCC
ggtatgcaaaatttcaacaaagcAGTTGCTTATAAAGCTTATGAACATTT
GATTTCATTGGAACTCTTAAAAAGTACGGAAACATTATCCATCAATTCAA
CATCAAAGGAGTTCAAAGCAATGACACTTTTACTTGAACCTTCCCAAATT
AAAGAGATTGTCTACAGATATCCTGAATGTCCAACTGAACTTCGACAATG
GGCTGATAGCATGTTTGTGTACTGATTTTATTGGTTTGCTGgtatgattt
atttttaatgtttgaATAATGTATCCCATTTATAAAGACTATTTCCATTC
TAACAATATGCCACATAGGATTCAATGTGACCTAAAATTCATTCGCT
Run BLAST on NCBI

protein sequence of TCONS_00050698-protein

>TCONS_00050698-protein ID=TCONS_00050698-protein|Name=TCONS_00050698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
NGQSKSVILVLDEFDLFAYHKNQSLLYNLFDIAQSKQNPLCVIGLTCRLD
VVELLEKRVKSRYSHRAILTFPSYSFEEYVDIVSSFLKLSEDFPCKKFKD
RWNRNLDENLSESSVCCEILLKQYNLQKDFQSLIRLLTPVVYGISNKKPF
ISNTDFVEAYTSLHIDSKTALLNGLSTLELSLLVAAKHVFNRREGQPFNY
EMVYNEYENFLKRRLSGMQNFNKAVAYKAYEHLISLELLKSTETLSINST
SKEFKAMTLLLEPSQIKEIVYRYPECPTELRQWADSMFVY
Run BLAST on NCBI

transcript from alignment at scaffold_183:40428..43278-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050698 ID=TCONS_00050698|Name=TCONS_00050698|organism=Clytia hemisphaerica|type=transcript|length=2851bp|location=Sequence derived from alignment at scaffold_183:40428..43278- (Clytia hemisphaerica)
ATAATGGACAATCAAAGTCAGTTATTTTGGTATTAGATGAATTTGATTTG
TTTGCCTACCATAAAAACCAATCGTTACTTTACAACTTGTTTGACATTGC
CCAAAGTAAACAAAACCCATTATGTGTCATTGGCCTGACTTGTAGACTTG
ATGTGGTTGAGTTGTTGGAAAAACGAGTGAAATCAAGATATTCACACAGA
GCTATATTGACATTTCCATCTTATAGTTTTGAAGAATATGTAGACATTGT
AAGGTATAACAACCCATTAAATTTCATTTAATTTGAAATCATTAAAAAGT
GTTTTTAAGTTCCATGCAACTCTGAACAGTTTAAAAAATTAAGGGTGGTT
TTGTGACATTTTTAGACTTTCTTATTTAATCCACGACATTTTTCGAATAA
CTTTAGAAAGAGAGTCTGATTGTTAAGCTTTCCGATGAATAAATTATTAA
AGTTTGTAGGTAACTAGGTATGATTTTACTCGAGCTTTTTACAGGTAAAG
TGTTGTGAGTTAAAATGGCATGTGGGTTACTTCTTTACTGATCTTCTACC
ATTATCTTTTCTTTTAGCTCCTTTCTAAAACTATCAGAAGATTTTCCTTG
TAAAAAGTTCAAGGACAGATGGAATCGTAATTTAGATGTAAGTCATCATT
GTGTTTTACAAATACTAATACAATCACTTAAGCTTGTTATANTAGATGTA
AGTCATCATTGTGTTTTGCAAATGCAAATACAATCACTTAAGCTTGTTAT
ATGAGAATCTAGTAATACTAATTTTGAAGCACCTTCTTCAAAGAGAGTGT
AATTAATCGTTAATTGCATCCTGTAGAGAGCAATTAATTGTTAATCACAC
TTTTCGATGCAGCACCAATGTTTACAAAATTGATTTTAATGTTTTTTCTT
ACGTTTTTTTCATTGAACGTTTTAATTGCATTTGCAAATTCATTTTTGTG
AGAAAGAAAATCTATAAACAACAATAAAATAAAAACATAGAGAGAAGAGA
AACGTATAAAACTTTCAGTGTAATTTACTTTCCTAACAGGGAAAATGTAC
TTAGATAGACTCATTGTGCGATCAGCTCGTAATCACCTAGCTAATAACTC
GTACAATTCAAAAATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAG
CGATGCATTGTGGGATTGTTTCGAGTGTATTACAATAGAAATCTCTTAGG
AATTCTTCGAGGGAATTCTATTGTAATACACTCGAAACAATCCCACAATG
CATCGCTTTTTTATAAAAATCAAAAACTCCGATAAGGTCTACTGCACTCG
TAATTCTTTTTGTTTTGAATTTTCCTCGTCCTTTATAAATTAATAACAAA
AAAGATACCAATGCAATTATTCTCGCATTGCACTCGTTATCATGTGATCA
CATATACTTATTTGAGAGTGTAGCAATACTAATTTTGAAGCACCTTTGAT
AGATGGACTAAAAAAGCGAGAAATACTCTACTTTATTTTTAGGAAAATCT
TTCTGAAAGTTCAGTATGTTGTGAAATACTTTTGAAACAGTATAATCTAC
AAAAGGATTTTCAAAGTCTCATACGTCTCTTGGTAAGGACACCTCATACT
TTTCTTTCAATGTATTTATATGTACCGGTTACACTTTTAACTCGCAAGAA
GGGAAGTTGCAAGCTTACTTTCTTATAACAAAGTTTGTCAAATTAGATTG
TAAACTTTGTTTCCAATTGAGACCTCTGTAACATTTACTTCTCCTTCTCA
AAATACAGTAGAACTTTAGAAATTTATTGCGAACAGTTTAACTGTCCAAA
AATATTTTGTATTCCCTATTTAAACTTATTTAAACCTAATTTTTAGACAC
CTGTTGTGTATGGAATCTCAAACAAAAAGCCCTTCATATCAAACACAGAC
TTTGTGGAAGCATATACATCACTTCACATCGATAGCAAAACAGCTTTGTT
AAATGGTATGAATTGATATTTTGCAGCAGTTGTACCGGAACTTGTATATA
AAGAATTGAACATTTCTTTTTAGTCATTCATTTTCACATCTTGGAGTCCC
ATTAAGGTCTATTTTTTCAGCTATCATAGTCCCACACAGGGTCGAAATTT
GGCCCTTTCTGGGTCCCTTAGAGGGTACAGTTAGCGTGAAAATACAATCA
CTGCAAATCAATTGCGAAAATAAAAATGGGTACAAAAAGTATGAAACTTC
TATCAGGTTTTCATTTAAAACTTTATAGGACTTTCAACTCTTGAGTTAAG
TTTATTGGTAGCAGCAAAGCACGTCTTTAACCGAAGAGAAGGACAACCTT
TCAATTACGAAATGGTGTATAATGGTAAGTAACTTTCTGTCATCCTTGAA
TAGTTCGACTTAATGATATATTGCTGTCAGGTCTCATCTGCTTCATTCAA
AAATGTGTTGTGCACATAGAAGTTGCGCACTCAGTGAATTTGAAAATGAT
TTCTTCCCTCTTTCCTTTCTAGAGTATGAAAACTTTTTGAAGCGTAGATT
ATCCGGTATGCAAAATTTCAACAAAGCAGTTGCTTATAAAGCTTATGAAC
ATTTGATTTCATTGGAACTCTTAAAAAGTACGGAAACATTATCCATCAAT
TCAACATCAAAGGAGTTCAAAGCAATGACACTTTTACTTGAACCTTCCCA
AATTAAAGAGATTGTCTACAGATATCCTGAATGTCCAACTGAACTTCGAC
AATGGGCTGATAGCATGTTTGTGTACTGATTTTATTGGTTTGCTGGTATG
ATTTATTTTTAATGTTTGAATAATGTATCCCATTTATAAAGACTATTTCC
ATTCTAACAATATGCCACATAGGATTCAATGTGACCTAAAATTCATTCGC
T

Coding sequence (CDS) from alignment at scaffold_183:40428..43278-

>TCONS_00050698 ID=TCONS_00050698|Name=TCONS_00050698|organism=Clytia hemisphaerica|type=CDS|length=5238bp|location=Sequence derived from alignment at scaffold_183:40428..43278- (Clytia hemisphaerica)
AGTATGAAAACTTTTTGAAGCGTAGATTATCCGGTATGCAAAATTTCAAC
AAAGCAGTTGCTTATAAAGCTTATGAACATTTGATTTCATTGGAACTCTT
AAAAAGTACGGAAACATTATCCATCAATTCAACATCAAAGGAGTTCAAAG
CAATGACACTTTTACTTGAACCTTCCCAAATTAAAGAGATTGTCTACAGA
TATCCTGAATGTCCAACTGAACTTCGACAATGGGCTGATAGCATGTTTGT
GTACTGAGACTTTCAACTCTTGAGTTAAGTTTATTGGTAGCAGCAAAGCA
CGTCTTTAACCGAAGAGAAGGACAACCTTTCAATTACGAAATGGTGTATA
ATGACACCTGTTGTGTATGGAATCTCAAACAAAAAGCCCTTCATATCAAA
CACAGACTTTGTGGAAGCATATACATCACTTCACATCGATAGCAAAACAG
CTTTGTTAAATGGAAAATCTTTCTGAAAGTTCAGTATGTTGTGAAATACT
TTTGAAACAGTATAATCTACAAAAGGATTTTCAAAGTCTCATACGTCTCT
TGCTCCTTTCTAAAACTATCAGAAGATTTTCCTTGTAAAAAGTTCAAGGA
CAGATGGAATCGTAATTTAGATAATGGACAATCAAAGTCAGTTATTTTGG
TATTAGATGAATTTGATTTGTTTGCCTACCATAAAAACCAATCGTTACTT
TACAACTTGTTTGACATTGCCCAAAGTAAACAAAACCCATTATGTGTCAT
TGGCCTGACTTGTAGACTTGATGTGGTTGAGTTGTTGGAAAAACGAGTGA
AATCAAGATATTCACACAGAGCTATATTGACATTTCCATCTTATAGTTTT
GAAGAATATGTAGACATTGTAAGAGTATGAAAACTTTTTGAAGCGTAGAT
TATCCGGTATGCAAAATTTCAACAAAGCAGTTGCTTATAAAGCTTATGAA
CATTTGATTTCATTGGAACTCTTAAAAAGTACGGAAACATTATCCATCAA
TTCAACATCAAAGGAGTTCAAAGCAATGACACTTTTACTTGAACCTTCCC
AAATTAAAGAGATTGTCTACAGATATCCTGAATGTCCAACTGAACTTCGA
CAATGGGCTGATAGCATGTTTGTGTACTGAGACTTTCAACTCTTGAGTTA
AGTTTATTGGTAGCAGCAAAGCACGTCTTTAACCGAAGAGAAGGACAACC
TTTCAATTACGAAATGGTGTATAATGACACCTGTTGTGTATGGAATCTCA
AACAAAAAGCCCTTCATATCAAACACAGACTTTGTGGAAGCATATACATC
ACTTCACATCGATAGCAAAACAGCTTTGTTAAATGGAAAATCTTTCTGAA
AGTTCAGTATGTTGTGAAATACTTTTGAAACAGTATAATCTACAAAAGGA
TTTTCAAAGTCTCATACGTCTCTTGCTCCTTTCTAAAACTATCAGAAGAT
TTTCCTTGTAAAAAGTTCAAGGACAGATGGAATCGTAATTTAGATAATGG
ACAATCAAAGTCAGTTATTTTGGTATTAGATGAATTTGATTTGTTTGCCT
ACCATAAAAACCAATCGTTACTTTACAACTTGTTTGACATTGCCCAAAGT
AAACAAAACCCATTATGTGTCATTGGCCTGACTTGTAGACTTGATGTGGT
TGAGTTGTTGGAAAAACGAGTGAAATCAAGATATTCACACAGAGCTATAT
TGACATTTCCATCTTATAGTTTTGAAGAATATGTAGACATTGTAAGAGTA
TGAAAACTTTTTGAAGCGTAGATTATCCGGTATGCAAAATTTCAACAAAG
CAGTTGCTTATAAAGCTTATGAACATTTGATTTCATTGGAACTCTTAAAA
AGTACGGAAACATTATCCATCAATTCAACATCAAAGGAGTTCAAAGCAAT
GACACTTTTACTTGAACCTTCCCAAATTAAAGAGATTGTCTACAGATATC
CTGAATGTCCAACTGAACTTCGACAATGGGCTGATAGCATGTTTGTGTAC
TGAGACTTTCAACTCTTGAGTTAAGTTTATTGGTAGCAGCAAAGCACGTC
TTTAACCGAAGAGAAGGACAACCTTTCAATTACGAAATGGTGTATAATGA
CACCTGTTGTGTATGGAATCTCAAACAAAAAGCCCTTCATATCAAACACA
GACTTTGTGGAAGCATATACATCACTTCACATCGATAGCAAAACAGCTTT
GTTAAATGGAAAATCTTTCTGAAAGTTCAGTATGTTGTGAAATACTTTTG
AAACAGTATAATCTACAAAAGGATTTTCAAAGTCTCATACGTCTCTTGCT
CCTTTCTAAAACTATCAGAAGATTTTCCTTGTAAAAAGTTCAAGGACAGA
TGGAATCGTAATTTAGATAATGGACAATCAAAGTCAGTTATTTTGGTATT
AGATGAATTTGATTTGTTTGCCTACCATAAAAACCAATCGTTACTTTACA
ACTTGTTTGACATTGCCCAAAGTAAACAAAACCCATTATGTGTCATTGGC
CTGACTTGTAGACTTGATGTGGTTGAGTTGTTGGAAAAACGAGTGAAATC
AAGATATTCACACAGAGCTATATTGACATTTCCATCTTATAGTTTTGAAG
AATATGTAGACATTGTAAGAGTATGAAAACTTTTTGAAGCGTAGATTATC
CGGTATGCAAAATTTCAACAAAGCAGTTGCTTATAAAGCTTATGAACATT
TGATTTCATTGGAACTCTTAAAAAGTACGGAAACATTATCCATCAATTCA
ACATCAAAGGAGTTCAAAGCAATGACACTTTTACTTGAACCTTCCCAAAT
TAAAGAGATTGTCTACAGATATCCTGAATGTCCAACTGAACTTCGACAAT
GGGCTGATAGCATGTTTGTGTACTGAGACTTTCAACTCTTGAGTTAAGTT
TATTGGTAGCAGCAAAGCACGTCTTTAACCGAAGAGAAGGACAACCTTTC
AATTACGAAATGGTGTATAATGACACCTGTTGTGTATGGAATCTCAAACA
AAAAGCCCTTCATATCAAACACAGACTTTGTGGAAGCATATACATCACTT
CACATCGATAGCAAAACAGCTTTGTTAAATGGAAAATCTTTCTGAAAGTT
CAGTATGTTGTGAAATACTTTTGAAACAGTATAATCTACAAAAGGATTTT
CAAAGTCTCATACGTCTCTTGCTCCTTTCTAAAACTATCAGAAGATTTTC
CTTGTAAAAAGTTCAAGGACAGATGGAATCGTAATTTAGATAATGGACAA
TCAAAGTCAGTTATTTTGGTATTAGATGAATTTGATTTGTTTGCCTACCA
TAAAAACCAATCGTTACTTTACAACTTGTTTGACATTGCCCAAAGTAAAC
AAAACCCATTATGTGTCATTGGCCTGACTTGTAGACTTGATGTGGTTGAG
TTGTTGGAAAAACGAGTGAAATCAAGATATTCACACAGAGCTATATTGAC
ATTTCCATCTTATAGTTTTGAAGAATATGTAGACATTGTAAGAGTATGAA
AACTTTTTGAAGCGTAGATTATCCGGTATGCAAAATTTCAACAAAGCAGT
TGCTTATAAAGCTTATGAACATTTGATTTCATTGGAACTCTTAAAAAGTA
CGGAAACATTATCCATCAATTCAACATCAAAGGAGTTCAAAGCAATGACA
CTTTTACTTGAACCTTCCCAAATTAAAGAGATTGTCTACAGATATCCTGA
ATGTCCAACTGAACTTCGACAATGGGCTGATAGCATGTTTGTGTACTGAG
ACTTTCAACTCTTGAGTTAAGTTTATTGGTAGCAGCAAAGCACGTCTTTA
ACCGAAGAGAAGGACAACCTTTCAATTACGAAATGGTGTATAATGACACC
TGTTGTGTATGGAATCTCAAACAAAAAGCCCTTCATATCAAACACAGACT
TTGTGGAAGCATATACATCACTTCACATCGATAGCAAAACAGCTTTGTTA
AATGGAAAATCTTTCTGAAAGTTCAGTATGTTGTGAAATACTTTTGAAAC
AGTATAATCTACAAAAGGATTTTCAAAGTCTCATACGTCTCTTGCTCCTT
TCTAAAACTATCAGAAGATTTTCCTTGTAAAAAGTTCAAGGACAGATGGA
ATCGTAATTTAGATAATGGACAATCAAAGTCAGTTATTTTGGTATTAGAT
GAATTTGATTTGTTTGCCTACCATAAAAACCAATCGTTACTTTACAACTT
GTTTGACATTGCCCAAAGTAAACAAAACCCATTATGTGTCATTGGCCTGA
CTTGTAGACTTGATGTGGTTGAGTTGTTGGAAAAACGAGTGAAATCAAGA
TATTCACACAGAGCTATATTGACATTTCCATCTTATAGTTTTGAAGAATA
TGTAGACATTGTAAGAGTATGAAAACTTTTTGAAGCGTAGATTATCCGGT
ATGCAAAATTTCAACAAAGCAGTTGCTTATAAAGCTTATGAACATTTGAT
TTCATTGGAACTCTTAAAAAGTACGGAAACATTATCCATCAATTCAACAT
CAAAGGAGTTCAAAGCAATGACACTTTTACTTGAACCTTCCCAAATTAAA
GAGATTGTCTACAGATATCCTGAATGTCCAACTGAACTTCGACAATGGGC
TGATAGCATGTTTGTGTACTGAGACTTTCAACTCTTGAGTTAAGTTTATT
GGTAGCAGCAAAGCACGTCTTTAACCGAAGAGAAGGACAACCTTTCAATT
ACGAAATGGTGTATAATGACACCTGTTGTGTATGGAATCTCAAACAAAAA
GCCCTTCATATCAAACACAGACTTTGTGGAAGCATATACATCACTTCACA
TCGATAGCAAAACAGCTTTGTTAAATGGAAAATCTTTCTGAAAGTTCAGT
ATGTTGTGAAATACTTTTGAAACAGTATAATCTACAAAAGGATTTTCAAA
GTCTCATACGTCTCTTGCTCCTTTCTAAAACTATCAGAAGATTTTCCTTG
TAAAAAGTTCAAGGACAGATGGAATCGTAATTTAGATAATGGACAATCAA
AGTCAGTTATTTTGGTATTAGATGAATTTGATTTGTTTGCCTACCATAAA
AACCAATCGTTACTTTACAACTTGTTTGACATTGCCCAAAGTAAACAAAA
CCCATTATGTGTCATTGGCCTGACTTGTAGACTTGATGTGGTTGAGTTGT
TGGAAAAACGAGTGAAATCAAGATATTCACACAGAGCTATATTGACATTT
CCATCTTATAGTTTTGAAGAATATGTAGACATTGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032122XLOC_032122Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050698-proteinTCONS_00050698-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050698-exon-scaffold_183-1575043694:43026..43278TCONS_00050698-exon-scaffold_183-1575043694:43026..43278Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1575043694:42642..42711TCONS_00050698-exon-scaffold_183-1575043694:42642..42711Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1575043694:41697..41786TCONS_00050698-exon-scaffold_183-1575043694:41697..41786Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1575043694:41324..41432TCONS_00050698-exon-scaffold_183-1575043694:41324..41432Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1575043694:40955..41050TCONS_00050698-exon-scaffold_183-1575043694:40955..41050Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1575043694:40428..40806TCONS_00050698-exon-scaffold_183-1575043694:40428..40806Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1510915933:43026..43278TCONS_00050698-exon-scaffold_183-1510915933:43026..43278Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1510915933:42642..42711TCONS_00050698-exon-scaffold_183-1510915933:42642..42711Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1510915933:41697..41786TCONS_00050698-exon-scaffold_183-1510915933:41697..41786Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1510915933:41324..41432TCONS_00050698-exon-scaffold_183-1510915933:41324..41432Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1510915933:40955..41050TCONS_00050698-exon-scaffold_183-1510915933:40955..41050Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1510915933:40428..40806TCONS_00050698-exon-scaffold_183-1510915933:40428..40806Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1491911889:43026..43278TCONS_00050698-exon-scaffold_183-1491911889:43026..43278Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1491911889:42642..42711TCONS_00050698-exon-scaffold_183-1491911889:42642..42711Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1491911889:41697..41786TCONS_00050698-exon-scaffold_183-1491911889:41697..41786Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1491911889:41324..41432TCONS_00050698-exon-scaffold_183-1491911889:41324..41432Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1491911889:40955..41050TCONS_00050698-exon-scaffold_183-1491911889:40955..41050Clytia hemisphaericaexon
TCONS_00050698-exon-scaffold_183-1491911889:40428..40806TCONS_00050698-exon-scaffold_183-1491911889:40428..40806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_183supercontigscaffold_183:40428..43278 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.655	12.1473	13.543	13.4595	7.60529	5.89106	4.55733	6.12058	2.80431	1.81749	1.58152	1.05845	0.892806	0.952278	1.45857	1.89591	1.82282	1.57159	0.935711	1.04031	1.43099	1.93077	9.18053	9.1876	1.35373	2.77764	1.16684	0.938368	4.66505	4.08125
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032705ORC4_C
IPR016527ORC4
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0000808origin recognition complex
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
cellular_component GO:0000808 origin recognition complex
molecular_function GO:0003677 DNA binding
Blast
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BLAST of TCONS_00050698 vs. Swiss-Prot (Human)
Match: ORC4 (Origin recognition complex subunit 4 OS=Homo sapiens GN=ORC4 PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 6.592e-76
Identity = 137/280 (48.93%), Postives = 192/280 (68.57%), Query Frame = 3 
Query:   21 VILVLDEFDLFAYHKNQSLLYNLFDIAQSKQNPLCVIGLTCRLDVVELLEKRVKSRYSHRAILTFPSYSFEEYVDIVSSFLKLSEDFPCKKFKDRWNRNLDENLSESSVCCEILLKQYNLQKDFQSLIRLLTPVVYGISNKKPFISNTDFVEAYTSLHIDSKTAXXXXXXXXXXXXXVAAKHVFNRREGQPFNYEMVYNEYENFLKRRLSGMQNFNKAVAYKAYEHXXXXXXXXXXXXXXXNSTSKEFKAMTLLLEPSQIKEIVYRYPECPTELRQWADS 860
            VI +LDEFDLFA+HKNQ+LLYNLFDI+QS Q P+ VIGLTCRLD++ELLEKRVKSR+SHR I    S+ F +YV I    L L  +FP K F ++WN N+ + LSE     E+L K +N+ K+ +SL  LL   +  ++   PF++  D +EA     +DSK  +++GLS LE+ L++A KH+ +  E +PFN++MVYNE++ F++R+   + NF K V  KA+EHL  LEL+K  E  S NS  +E++ M LLL+ +QI   + +YP CPT++RQWA S
Sbjct:  154 VIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKVFAEKWNENV-QYLSEDRSVQEVLQKHFNISKNLRSLHMLLMLALNRVTASHPFMTAVDLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQRKAHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNS-QREYQLMKLLLDNTQIMNALQKYPNCPTDVRQWATS 431
The following BLAST results are available for this feature:
BLAST of TCONS_00050698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ORC46.592e-7648.93Origin recognition complex subunit 4 OS=Homo sapie... [more]
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