|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050697 ID=TCONS_00050697|Name=TCONS_00050697|organism=Clytia hemisphaerica|type=transcript|length=1948bp
CATTTGCATTTGTATTTCGCTTCTCCTGATCCGGACCATCCATCTGCtct
ttcgaatgtaattaatatcttcatttttcccTGAACCTGTTGTTATTGAA
AGAGTTTTACTATTAATAGATTAAATAACTAATAACGtaataataatttt
taataGATTAAAGATCGACCTTACATTTCTTGCACAACTTCTCATCATCA
TGAAAAGTCCAAGGTTTCCATAAACTCCATAAATCCACGAGATCGCTTTC
TTTTCGTTCCCACATTCTTTGAGCTTGCTTGATTACTCCGAACCCATCAG
CCAaaaagaaaatcgtttgtttgtTAGTATTGTTATTATGTGGCATATTT
TCCAATACATTTATCAATTCCTTCCCATCAGTCCTTTTGATGCATGAGGG
TGTAACGTTGTTGAATCCAGCGCTTTCGTCAGCTTTGTAACATTTGCATT
TGTATTTCGCTTCTCCTGATCCGGACCATCCATCTTCTATTTCACATTGG
CCGCTGCGTGAATTAAGGGTGAATATACAGGAATTGTGACATATGATGTC
TTGTTagaaaaaacaatcattaaacGATCTACATTCCCTGTCAACAAAGA
GTTTTCCATGGATCCGACAGGCTGATGTTGCTAGGATGAAAGTCATCTAC
CCCTTCCGTCACCCATTCTTGTTACATGATTGAACGACCACCATGTAAAA
CAATAAAACAAAACTTTTCATTGTCTTCATTTTTCACCCTAGCAACATGA
ATATAAATATGATTGATAAATAAAAAAATCCTAAAAAAAAAATAAATCAA
AATTTAATCATAAGTCAATAATAAATCAATAATAAATCAataataaatca
gaaataaatcagaaataaatcagaaatcaaaagtaAGTCAATAATCAAAA
TCTTGAACAAAATTattcgagtgatttacccctcgttaCTTTCTTCAtat
catagtgtgcaagggTGTTCCAGGTCACACCTAAAAATCCAGGTCACACC
CTAAAATGCCATCCCCACGAAAAATTATACTAATTCGAGGTACGAAACAA
AAATTCTTACTGTTTAAGGCTTAATAAttaaaaggagaaaagtttagtat
agtaaaagaattatttatataatataaaattttgaaaaaattaaaattaa
attggaaataagaaaaaattaacattaacttttaccaaaacaccaaaaat
cccaCCCAAAGAAATTAATCCCCACCCTAACTTGTTTTTCCCacctaaaa
cctgaaaatttccaaatcccacCTGGTTTCGACCCAAAACACCAACCCTC
CACCCCACCCCACTATTTTGGGTGCACACTATGCATATCTTACAAAGCAT
AActaattaattttgatttccaattatttttttcaattaaagtCGAGTCT
TACCTCAGATACTGTATGAAGCGAATAAAAAGAATCGGTCCTTTACACAC
CATTTTTGACAGAGGTCTACACCCGAAGCTATCGCCCCAATTATACCATT
GGATAGCTAAACTTTCTCACCCTTTCTCATTCCTGGGGCAACATCTAAgt
tttggtttgaaataacGAGAGATCATTCCTCAACGAAAGTGCATCAAGTG
TGATACACCCGTCCAAAAGTTTCTATATTATTGAGATtttaccaggataa
tcacgacgacgggcGAAAATTGTAACAGGCTAGTCTAAATACgagatttg
attggtcgaaactCACTcacctattacatttttcgtctgTCGTCGTCGCT
attattttcactttattttgatttattgcTAAAGTATATATTTTATACCT
TTCTTTAACCAACCTAGTCCTCATTTATTAGCTAATTTGGTCTAAATTGA
ATTGAAAGTGGAAATGATTTTAATTTAATAATGTATGggtaaaattattt
tcagttacTTTTTCTTTaggaaataaattttaaatttatatacAGCAA Run BLAST on NCBI transcript from alignment at scaffold_183:12079..15179- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050697 ID=TCONS_00050697|Name=TCONS_00050697|organism=Clytia hemisphaerica|type=transcript|length=3101bp|location=Sequence derived from alignment at scaffold_183:12079..15179- (Clytia hemisphaerica)
CATTTGCATTTGTATTTCGCTTCTCCTGATCCGGACCATCCATCTGCTCT
TTCGAATGTAATTAATATCTTCATTTTTCCCTGAACCTGTTGTTATTGAA
AGAGTTTTACTATTAATAGATTAAATAACTAATAACGTAATAATAATTTT
TAATAGATTAAAGATCGACCTTACATTTCTTGCACAACTTCTCATCATCA
TGAAAAGTCCAAGGTTTCCATAAACTCCATAAATCCACGAGATCGCTTTC
TTTTCGTTCCCACATTCTTTGAGCTTGCTTGATTACTCCGAACCCATCAG
CCAAAAAGAAAATCGTTTGTTTGTTAGTATTGTTATTATGTGGCATATTT
TCCAATACATTTATCAATTCCTTCCCATCAGTCCTTTTGATGCATGAGGG
TGTAACGTTGTTGAATCCAGCGCTTTCGTCAGCTTTGTAACATTTGCATT
TGTATTTCGCTTCTCCTGATCCGGACCATCCATCTTCTATTTCACATTGG
CCGCTGCGTGAATTAAGGGTGAATATACAGGAATTGTGACATATGATGTC
TTGTTAGAAAAAACAATCATTAAACGATCTACATTCCCTGTCAACAAAGA
GTTTTCCATGGATCCGACAGGCTGATGTTGCTAGGATGAAAGTCATCTAC
CCCTTCCGTCACCCATTCTTGTTACATGATTGAACGTAATCGAAGTGAAC
GACCACCATGTAAAACAATAAAACAAAACTTTTCATTGTCTTCATTTTTC
ACCCTAACAACATGAATATAAATATGATTGATAAATATGATTGGTAAATA
AATTAATTAATTGATAAATTAAAAAGTAAATCATAAATCGAAAATAAATT
GTAAATCAAATATAAAAAATAAATCAAAATTTAATCAAAAATAAATTAAA
TCTCTGAACCATTAGCAATCCGGCAGGCTGATGTTGCTAGGATGAAAGTC
ATCTATCCCTTCCGTCACCAATTTCTTGTTACATGATTGAACGTAATCGA
AGTGAACGATCACCATGTAAAACAATTAAACAAAACTTTTCATTGTCTTC
ATTTTTCACCCTAACAACATGAATATAAATATGATTGATAAATAAATTAA
TTAATTGATAAATTAAAAAGTAAATCGTAAATCAAATATAAAAAATAAAT
CCAAATTTAATCAAAAATCTAAAAATAAATTAAATCTCTGAAGAACTGGC
AATCCGGCCGGTCGATGTTACTACTTTAAGGGCAGAAACTTTCGCGGACA
GAAACCGAAAAGTCGCGAAATTTCGCGGATTTAAGTTTCGCGATTTTTAC
TTTTTGAAGAAAATTTACGGAAGAAACTTTCGCGGTTTTTTGTGAATGTT
CAATTTTAGTAGCAATAACTTTCGCGAATGGCTAGGGAAAGTGAATAAAG
AATTATTTTAAATCTCATTTTTTTCTTCAATTGAAAGAGTGATATGCTAA
TAAATGAAAAATAAACTATTTACACTTCTTCCTCCAATTCCAAATCCTCG
TCACTGCTATATTCGGCGGTAATATCGACTCTCATTCCGCATAATAATTC
AAATTCCTCCGGAGATATATCTGCGATTGGCAGTAAATACTGGTTACCTA
TGTTTATTTCGATTTTTCGGCTTTTAAAACTTGGAAAAAACTTTCGCGAT
TTTAGGAAAATTTCATTTTTCGCGAAATTAACTTTCGCCAATTTCTTGTT
TAATTCTTTACCTGGCAGAAACTTTCGCGAAAAAATGCCAAAAACGCGAA
AGTTTCTGCCCGCGAAAGTTTCTGCCCTTAAAGTAGGATGAAAGTCATCT
ATCCCTTCCGTCACCCATTTCTTGTTACATGATTGAACGACCACCATGTA
AAACAATAAAACAAAACTTTTCATTGTCTTCATTTTTCACCCTAGCAACA
TGAATATAAATATGATTGATAAATAAAAAAATCCTAAAAAAAAAATAAAT
CAAAATTTAATCATAAGTCAATAATAAATCAATAATAAATCAATAATAAA
TCAGAAATAAATCAGAAATAAATCAGAAATCAAAAGTAAGTCAATAATCA
AAATCTTGAACAAAATTATTCGAGTGATTTACCCCTCGTTACTTTCTTCA
TATCATAGTGTGCAAGGGTGTTCCAGGTCACACCTAAAAATCCAGGTCAC
ACCCTAAAATGCCATCCCCACGAAAAATTATACTAATTCGAGGTACGAAA
CAAAAATTCTTACTGTTTAAGGCTTAATAATTAAAAGGAGAAAAGTTTAG
TATAGTAAAAGAATTATTTATATAATATAAAATTTTGAAAAAATTAAAAT
TAAATTGGAAATAAGAAAAAATTAACATTAACTTTTACCAAAACACCAAA
AATCCCACCCAAAGAAATTAATCCCCACCCTAACTTGTTTTTCCCACCTA
AAACCTGAAAATTTCCAAATCCCACCTGGTTTCGACCCAAAACACCAACC
CTCCACCCCACCCCACTATTTTGGGTGCACACTATGCATATCTTACAAAG
CATAACTAATTAATTTTGATTTCCAATTATTTTTTTCAATTAAAGTCGAG
TCTTACCTCAGATACTGTATGAAGCGAATAAAAAGAATCGGTCCTTTACA
CACCATTTTTGACAGAGGTCTACACCCGAAGCTATCGCCCCAATTATACC
ATTGGATAGCTAAACTTTCTCACCCTTTCTCATTCCTGGGGCAACATCTA
AGTTTTGGTTTGAAATAACGAGAGATCATTCCTCAACGAAAGTGCATCAA
GTGTGATACACCCGTCCAAAAGTTTCTATATTATTGAGATTTTACCAGGA
TAATCACGACGACGGGCGAAAATTGTAACAGGCTAGTCTAAATACGAGAT
TTGATTGGTCGAAACTCACTCACCTATTACATTTTTCGTCTGTCGTCGTC
GCTATTATTTTCACTTTATTTTGATTTATTGCTAAAGTATATATTTTATA
CCTTTCTTTAACCAACCTAGTCCTCATTTATTAGCTAATTTGGTCTAAAT
TGAATTGAAAGTGGAAATGATTTTAATTTAATAATGTATGGGTAAAATTA
TTTTCAGTTACTTTTTCTTTAGGAAATAAATTTTAAATTTATATACAGCA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050697-exon-scaffold_183-1575043694:14505..15179 | TCONS_00050697-exon-scaffold_183-1575043694:14505..15179 | Clytia hemisphaerica | exon |
| TCONS_00050697-exon-scaffold_183-1575043694:12079..13351 | TCONS_00050697-exon-scaffold_183-1575043694:12079..13351 | Clytia hemisphaerica | exon |
| TCONS_00050697-exon-scaffold_183-1510915933:14505..15179 | TCONS_00050697-exon-scaffold_183-1510915933:14505..15179 | Clytia hemisphaerica | exon |
| TCONS_00050697-exon-scaffold_183-1510915933:12079..13351 | TCONS_00050697-exon-scaffold_183-1510915933:12079..13351 | Clytia hemisphaerica | exon |
| TCONS_00050697-exon-scaffold_183-1491911889:14505..15179 | TCONS_00050697-exon-scaffold_183-1491911889:14505..15179 | Clytia hemisphaerica | exon |
| TCONS_00050697-exon-scaffold_183-1491911889:12079..13351 | TCONS_00050697-exon-scaffold_183-1491911889:12079..13351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_183 | supercontig | scaffold_183:12079..15179 - |
Blast
The following BLAST results are available for this feature:
|
