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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050691 ID=TCONS_00050691|Name=TCONS_00050691|organism=Clytia hemisphaerica|type=transcript|length=2123bp
CGTTTCTCTCTAGGAAATCATAGCCCCACCCATTCATTGTGACTGATCAA
ATGTTTCGCTCCGGAGTAATCAAAAAACTCAACGCAAGCAAAGACATTAC
GGTTGGAGAAAGAACCAGTTTGTTTGCCGGCCTATGGGACGAATGTATCA
AATATCAGATGTATCCAGATCACGAAAAGTATTCAGACATGATCAAAGCT
GTATTTATTCGCTGGCCGAAGTTGGTTGTTGGGGAGCGGGATCATGccac
gatattttggacaaatCGATTGAAAGCTTACGTCAAGCGCGAGCGAAGCA
GAATGGATGATAATCCGGAAGTCATCGAAAAGCGCCAAAAATTTGGCAAA
CGAAAAGCAAGCGAAGACCAGTCAGTTGAAATgctaaaaaatccaaaaaa
ctttgGGGATTGATCTTCCCAACAGCCCTGCTGGAGAAGATCAGCATTCG
CTTCAAAAACACATTGAATCGTTGAAATCGCAAAGTTTACTGCCGCAAGC
CGCAAGAAACGCAGAACTAATTGAGACTCGTTTAGATCTAACATTACACG
ATCGACGTGCGAAACTTATCAATAATGATATAACTGTAAAAAATCTGATC
GACATTTACCCAATCCTTGCGAATGGTGAACAGGTAAGCATAATTCGGCT
AATTATTGAATCGAAGGGGGGGAGGGCAACTAGGCAGAATTGGGTACGGA
GACGTGCCACTGGTCAGGGTCCTTTGTTTAGGCTCTGaaaatatctgaca
gggtcccaaattaaCTAactttcaagatgtgtatctgacagggttgcATT
TAgctaattttggacatttttcagggtggaaatcagaaaattattcaatt
tttgtctacttttagtcatttttgccacttgggtgaaaatgggaaaattt
tgcaatttttcgttctgataGGGTcccaattttacaaaaattatatctga
cagggtccacttctCAAACTTAGTGAATAACAGTTAAATTCCATTGCCTG
CGAAATCGAGCTGAAGTATTAGGTTGGGTACACATTTTACTAATGCGTTT
ACttattttcatttcagattTTGTTAGAGTTCCAACGCTTGGCTGGCTTT
AAATTGATCGGTAGGCTGGAGGAATCTATGCCCGATTACGCACGTGCTAT
CATCCACTTCTCAAAATCTGACATGGCGGTGGCAATCAGCAATGcttcaa
caaaaaaagaaaaagactgtAAGTTGCACATCAGTGCTTGCCATTTAAGG
TTGAGACATTTCACTGGGCGGTATCCGTCGTCGCaaacatcaaaagccct
ttggatagtATAGTAGGGTTTAAGAATGGTCAATCAAATTTAGACATTTG
TATTAagaaacaggggggggggctgcCTACAGTCCGGCAGTTGGCAGAAA
ATCGAAAAGTTAATATCCGGCGTTTAGGATCCTTGGAACATAATTGAAAG
TAAGAATATAATGAATATGAACAAAAGCTTAAAAATATAACTTTGTTTTT
CAACAGATCGATATGCTGTTGTTGGAGTAATGACCTTACCGACATTGTTT
CGAGAAGATCCAAAACACTACTACGGAATTGATAACACCCTAACTCCTCG
AATCAGTCATGCTAACCCTGACATTTTCGACGAACAAGAATTTTTCATCC
ACCTCGATGGCATCACTATTGGAAAGTCGAGAGATCCTTTGACGGCACTG
ACATTGATGTACAGTTGCTACTACGTGTTCAACTTAGTATACCCAAAGGA
GTTGCAAAGTTCCTTGGAATTTATCCAGCGTTTCTTGGTAAAAATCGGAG
ATGGTAGCAAGCCATCAGGCAAACTAATTACAGCAAtcacaaaaataaga
aaatatgcTGGTTGAAGTTCAACCACTGtatctttttatctttgtgacaT
TAGCAGTGATCAGTTTTGGCGATGGCTTGCTTTCGTCGCCGGTTTTAACC
ACGAAACTCAAATGAATAAATGAGTCCGTGCAGacattttgatatttgaa
aatttacaaagTTACGCTTCAACTTCTTTTCTTTGAgtttgaatattgaa
tattgaaAGCACTATATTTTCTTGTCAATGTTTTTTTGCCAAATGAAAAT
TAGAAAGGCTAAAACTGCACTCC Run BLAST on NCBI transcript from alignment at scaffold_183:17183..19721+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050691 ID=TCONS_00050691|Name=TCONS_00050691|organism=Clytia hemisphaerica|type=transcript|length=2539bp|location=Sequence derived from alignment at scaffold_183:17183..19721+ (Clytia hemisphaerica)
CGTTTCTCTCTAGGAAATCATAGCCCCACCCATTCATTGTGACTGATCAA
ATGTTTCGCTCCGGAGTAATCAAAAAACTCAACGCAAGCAAAGACATTAC
GGTTGGAGAAAGAACCAGTTTGTTTGCCGGCCTATGGGACGAATGTATCA
AATATCAGATGTGAGTTTACATAAATTTTAAGAACAGAGTGAACAGAAAC
CATTTTCtatcttttgaaaaacattgaatGACTTGCTtatattatacaaa
aatctCCTGACAGAAAATCGACTCACGCAGAAACTTGCGGAAAATTTAAG
CACGTGCTAAGAAAGCTGaagttttgaatattttattttcttaagaaTTA
ACCACTAAAATATAACTATACTGCTCGGCATGGCAAATGTTTTTTCCGTA
CATggacgggagtatcatcgacggtcgggagtatctcatctttgttgttt
ggaattgcttaggtcatgGTTGCTAGTAACAGCCATGGTCTCTGTGTCGG
GTGCATACTGGAatccttgggccccgcagggttgctagtaacaaTATTTT
TGATGCTTATATGTTGCTATTTTTAGGTATCCAGATCACGAAAAGTATTC
AGACATGATCAAAGCTGTATTTATTCGCTGGCCGAAGTTGGTTGTTGGGG
AGCGGGATCATGccacgatattttggacaaatCGATTGAAAGCTTACGTC
AAGCGCGAGCGAAGCAGAATGGATGATAATCCGGAAGTCATCGAAAAGCG
CCAAAAATTTGGCAAACGAAAAGCAAGCGAAGACCAGTCAGTTGAAATgc
taaaaaatccaaaaaactttgGGGATTGATCTTCCCAACAGCCCTGCTGG
AGAAGATCAGCATTCGCTTCAAAAACACATTGAATCGTTGAAATCGCAAA
GTTTACTGCCGCAAGCCGCAAGAAACGCAGAACTAATTGAGACTCGTTTA
GATCTAACATTACACGATCGACGTGCGAAACTTATCAATAATGATATAAC
TGTAAAAAATCTGATCGACATTTACCCAATCCTTGCGAATGGTGAACAGG
TAAGCATAATTCGGCTAATTATTGAATCGAAGGGGGGGAGGGCAACTAGG
CAGAATTGGGTACGGAGACGTGCCACTGGTCAGGGTCCTTTGTTTAGGCT
CTGaaaatatctgacagggtcccaaattaaCTAactttcaagatgtgtat
ctgacagggttgcATTTAgctaattttggacatttttcagggtggaaatc
agaaaattattcaatttttgtctacttttagtcatttttgccacttgggt
gaaaatgggaaaattttgcaatttttcgttctgataGGGTcccaatttta
caaaaattatatctgacagggtccacttctCAAACTTAGTGAATAACAGT
TAAATTCCATTGCCTGCGAAATCGAGCTGAAGTATTAGGTTGGGTACACA
TTTTACTAATGCGTTTACttattttcatttcagattTTGTTAGAGTTCCA
ACGCTTGGCTGGCTTTAAATTGATCGGTAGGCTGGAGGAATCTATGCCCG
ATTACGCACGTGCTATCATCCACTTCTCAAAATCTGACATGGCGGTGGCA
ATCAGCAATGcttcaacaaaaaaagaaaaagactgtAAGTTGCACATCAG
TGCTTGCCATTTAAGGTTGAGACATTTCACTGGGCGGTATCCGTCGTCGC
aaacatcaaaagccctttggatagtATAGTAGGGTTTAAGAATGGTCAAT
CAAATTTAGACATTTGTATTAagaaacaggggggggggctgcCTACAGTC
CGGCAGTTGGCAGAAAATCGAAAAGTTAATATCCGGCGTTTAGGATCCTT
GGAACATAATTGAAAGTAAGAATATAATGAATATGAACAAAAGCTTAAAA
ATATAACTTTGTTTTTCAACAGATCGATATGCTGTTGTTGGAGTAATGAC
CTTACCGACATTGTTTCGAGAAGATCCAAAACACTACTACGGAATTGATA
ACACCCTAACTCCTCGAATCAGTCATGCTAACCCTGACATTTTCGACGAA
CAAGAATTTTTCATCCACCTCGATGGCATCACTATTGGAAAGTCGAGAGA
TCCTTTGACGGCACTGACATTGATGTACAGTTGCTACTACGTGTTCAACT
TAGTATACCCAAAGGAGTTGCAAAGTTCCTTGGAATTTATCCAGCGTTTC
TTGGTAAAAATCGGAGATGGTAGCAAGCCATCAGGCAAACTAATTACAGC
AAtcacaaaaataagaaaatatgcTGGTTGAAGTTCAACCACTGtatctt
tttatctttgtgacaTTAGCAGTGATCAGTTTTGGCGATGGCTTGCTTTC
GTCGCCGGTTTTAACCACGAAACTCAAATGAATAAATGAGTCCGTGCAGa
cattttgatatttgaaaatttacaaagTTACGCTTCAACTTCTTTTCTTT
GAgtttgaatattgaatattgaaAGCACTATATTTTCTTGTCAATGTTTT
TTTGCCAAATGAAAATTAGAAAGGCTAAAACTGCACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050691-exon-scaffold_183-1491911889:17183..17342 | TCONS_00050691-exon-scaffold_183-1491911889:17183..17342 | Clytia hemisphaerica | exon |
| TCONS_00050691-exon-scaffold_183-1510915933:17183..17342 | TCONS_00050691-exon-scaffold_183-1510915933:17183..17342 | Clytia hemisphaerica | exon |
| TCONS_00050691-exon-scaffold_183-1575043694:17183..17342 | TCONS_00050691-exon-scaffold_183-1575043694:17183..17342 | Clytia hemisphaerica | exon |
| TCONS_00050691-exon-scaffold_183-1491911889:17759..19721 | TCONS_00050691-exon-scaffold_183-1491911889:17759..19721 | Clytia hemisphaerica | exon |
| TCONS_00050691-exon-scaffold_183-1510915933:17759..19721 | TCONS_00050691-exon-scaffold_183-1510915933:17759..19721 | Clytia hemisphaerica | exon |
| TCONS_00050691-exon-scaffold_183-1575043694:17759..19721 | TCONS_00050691-exon-scaffold_183-1575043694:17759..19721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_183 | supercontig | scaffold_183:17183..19721 + |
Blast
The following BLAST results are available for this feature:
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