TCONS_00050679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050679
Unique NameTCONS_00050679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050679 ID=TCONS_00050679|Name=TCONS_00050679|organism=Clytia hemisphaerica|type=transcript|length=489bp
NNGCACAATCCAACTTCTGGTTTGCAATCGGGCTACAAATGTCTGGAACA
CAAAGAGCTTCAACTAAAACGTATTTAGAAGACTTCCGATGTTTCACTTT
GAATCGAACAACTTCCAAACGTTTGATTTCCGCATTATTCAAATTTCCAA
AAGTCTTGATCACTACATTCTCTTTTCTCACGCACTTTAATTTTAAACGG
TCTTTTAACTCTGTCGTAATGTAGCTTCTTTGGCTTCCAGTGTCGAACAA
CAATCTTTTTTTCACACTGTTGTGACAACTGGAACCAAAGATCTCACTAG
TTGCAGTCTGCAACAAAACGCTACGTGAAGAAACTTGAGCACAATTTTGA
GAAACAGGAGTAGGAACAGAGTTGCAACTACAACTACAAGGAGCTTTGGA
TTCAGACTGAGGCTCACTATTTGCATCGGTCAAGATCGAGATCTGATTGT
TAGAAATGTTATCAGCTTCAGATCTTTGTTTACCTTCTT
Run BLAST on NCBI

protein sequence of TCONS_00050679-protein

>TCONS_00050679-protein ID=TCONS_00050679-protein|Name=TCONS_00050679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
EGKQRSEADNISNNQISILTDANSEPQSESKAPCSCSCNSVPTPVSQNCA
QVSSRSVLLQTATSEIFGSSCHNSVKKRLLFDTGSQRSYITTELKDRLKL
KCVRKENVVIKTFGNLNNAEIKRLEVVRFKVKHRKSSKYVLVEALCVPDI
CSPIANQKLDCX
Run BLAST on NCBI

transcript from alignment at scaffold_182:61850..62338

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050679 ID=TCONS_00050679|Name=TCONS_00050679|organism=Clytia hemisphaerica|type=transcript|length=489bp|location=Sequence derived from alignment at scaffold_182:61850..62338 (Clytia hemisphaerica)
AAGAAGGTAAACAAAGATCTGAAGCTGATAACATTTCTAACAATCAGATC
TCGATCTTGACCGATGCAAATAGTGAGCCTCAGTCTGAATCCAAAGCTCC
TTGTAGTTGTAGTTGCAACTCTGTTCCTACTCCTGTTTCTCAAAATTGTG
CTCAAGTTTCTTCACGTAGCGTTTTGTTGCAGACTGCAACTAGTGAGATC
TTTGGTTCCAGTTGTCACAACAGTGTGAAAAAAAGATTGTTGTTCGACAC
TGGAAGCCAAAGAAGCTACATTACGACAGAGTTAAAAGACCGTTTAAAAT
TAAAGTGCGTGAGAAAAGAGAATGTAGTGATCAAGACTTTTGGAAATTTG
AATAATGCGGAAATCAAACGTTTGGAAGTTGTTCGATTCAAAGTGAAACA
TCGGAAGTCTTCTAAATACGTTTTAGTTGAAGCTCTTTGTGTTCCAGACA
TTTGTAGCCCGATTGCAAACCAGAAGTTGGATTGTGCNN

Coding sequence (CDS) from alignment at scaffold_182:61850..62338

>TCONS_00050679 ID=TCONS_00050679|Name=TCONS_00050679|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_182:61850..62338 (Clytia hemisphaerica)
GAAGGTAAACAAAGATCTGAAGCTGATAACATTTCTAACAATCAGATCTC
GATCTTGACCGATGCAAATAGTGAGCCTCAGTCTGAATCCAAAGCTCCTT
GTAGTTGTAGTTGCAACTCTGTTCCTACTCCTGTTTCTCAAAATTGTGCT
CAAGTTTCTTCACGTAGCGTTTTGTTGCAGACTGCAACTAGTGAGATCTT
TGGTTCCAGTTGTCACAACAGTGTGAAAAAAAGATTGTTGTTCGACACTG
GAAGCCAAAGAAGCTACATTACGACAGAGTTAAAAGACCGTTTAAAATTA
AAGTGCGTGAGAAAAGAGAATGTAGTGATCAAGACTTTTGGAAATTTGAA
TAATGCGGAAATCAAACGTTTGGAAGTTGTTCGATTCAAAGTGAAACATC
GGAAGTCTTCTAAATACGTTTTAGTTGAAGCTCTTTGTGTTCCAGACATT
TGTAGCCCGATTGCAAACCAGAAGTTGGATTGTGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032108XLOC_032108Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050679-proteinTCONS_00050679-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050679-exon-scaffold_182-1491911889:61850..62338TCONS_00050679-exon-scaffold_182-1491911889:61850..62338Clytia hemisphaericaexon
TCONS_00050679-exon-scaffold_182-1510915933:61850..62338TCONS_00050679-exon-scaffold_182-1510915933:61850..62338Clytia hemisphaericaexon
TCONS_00050679-exon-scaffold_182-1575043694:61850..62338TCONS_00050679-exon-scaffold_182-1575043694:61850..62338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:61850..62338 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.380119	0.426635	0.363553	0.421069	121.103	90.0611	7.16764	10.8279	1.13784	5.15796	1.79719	1.85648	1.51683	1.3127	1.50447	3.08845	1.99748	0.974928	0.538766	4.0874	0.612534	0.416446	0	0.792477	1.08831	2.18541	0.173739	0.370839	1.12507	0.573135
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR008737Peptidase_asp_put
IPR001969Aspartic_peptidase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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