TCONS_00050670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050670
Unique NameTCONS_00050670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050670 ID=TCONS_00050670|Name=TCONS_00050670|organism=Clytia hemisphaerica|type=transcript|length=1291bp
GAATTTTCTTTAGGATTGAAAGGAGTCCAGGTTTTAATTGAAAAAACTAA
ATCCAGgTTCAATCCTTGGCAAAGTGATTCTGAgcaaatcaaaaatatat
ttgatgtACAAATTGAAGTTGCTGACTCACCTTGCATTTGGGAATTCAAT
CTAGAGCATGCAGATCATTTTCCAGATGTGATATTTGCTGAAGAAGACGA
AGAGTTTAATCCGGATATTACCTCATACACTGTGCATTTTTAAGAATCAG
TTATTTTTATGTTCCACAATTCCTCAAAAACTTTCGATGGTCCACAGCAG
TTTTTAACTTAAGTCAATCTCTTGACCAAACTTTCCTCAGAACAGAACTT
CTTGTAAGCCTTTTTGATCATTAGAAATTGGATTCCCTTCTTCCACTTTT
GTAAAACAAACATTTTATCcttgaaaatttcagagcttGTCTGACTGGGA
CATTAAGAAAGACACAAAATTGCAAGAGTTTGTTCTGGAACTTTCTCGAT
CATATGTGCAATATCAAAAAGAGAAACTTCAATGCTACGATcaaataaaa
gaagaatttcAAATATTCTTCAAGGACCATTCAGAACTGGCTAATGAATG
TGAACTACAGATTGCGAAAGGAGGGCAGAAAGCACATACATACAGTGATA
TCATAACATTTTTGGTTCCGATCAAATGTGACTGTTCAGATGTACCACCA
ACATTCAAAAAGaAGAATTCAGGGAAGGATGTATCATATCTTCACATAAA
ATACGAATCACCAAATCAAACATCAGTCTCCTCAAAATTGATTCTCAACA
ACTCGCTCATCAGTGTGTTAGGTGGCAGCTCAAATCTTCGGATTCCATCA
TATGGTTCTTTAAGTTTATCAAAGTATGTGGAGAAAGTGACTAAGCTTGT
ACAAAATACTGTCGAAATGGTCAGTCAGGGATATCAAATGCGAAGACATT
TCATATCATTACTAATCAAAGAACTTGGAAGCTCAGCAATAGTTGAATAT
GATACCAAATTGTTCCTTGAAGCATGTTTTATGGTGGAACGCGAGGATGG
TTTTGCTTGTTTGCTTCTTGTTTCATTGACGCGTCTTTATTCTGAAAAAT
CTCCGAAGATGGTGCTACAATCCATTTACAATGTGGACGGTGCTTCAAAG
TTACCGAAACTTCAAGTGCCCTTAGAAGGATGTTTCCAAGATGTTGCTGG
TGCTGGTGATGGTGTTGGAGAATGCAATGAGAATGAAGACATCAGAGTGG
CGTTCATACGGTAAGTCCGGTTAATGAGATGTAGCCAGACN
Run BLAST on NCBI

transcript from alignment at scaffold_182:137832..145296-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050670 ID=TCONS_00050670|Name=TCONS_00050670|organism=Clytia hemisphaerica|type=transcript|length=7465bp|location=Sequence derived from alignment at scaffold_182:137832..145296- (Clytia hemisphaerica)
GAATTTTCTTTAGGATTGAAAGGAGTCCAGGTTTTAATTGAAAAAACTAA
ATCCAGGTACAGTAAATTAAATTTCATAGACGGTACTATAAATCTAGTAA
TCGATAATGCCAGACGGTGTCAATCGAACAACTTCGAACAAAAATCGCAA
TCGAACCAATCGAACGTAATCGAACGCGATCGAATAATTGCGATTCGATT
GTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACCGATAAAAAAACAG
GTAAAACCAAACTATCAATTGGGCCTGCTGGCCTAAAGATTGACCCCCTT
ATTTCCCAGCCATTTTCCCCGCCATTTTGTGTGACTTTGCCCTGGGTTTC
CTCAAGTAACTCATATCGCACATTCTGATTGGTCAGAGAAAATAAAAGTG
GTTTTCGCGCGTGAATCGTGTGCCTTAAAAAAATTGGTGGAACTAGACTT
GGTGTGACTTGGTTTCAGATTATTTTGAGGCGCTGCTACTGGAAACTGGA
AACATATTTGATAAAATCGGAGGCTGGAAAGTACTCAATATAATCAAAGG
TATTCAATATGATCGAAGGTAATCTCATGCAGCAAGTTACATGACTGGTT
ATTTGCAAGTCCCATGGGGCGATAGGCGGTAAGGAGGTGGGCGTTCTCTG
ATTCTCAAATTGGTGCCAGTCATTTTGAATGAAAACAAAAAAGTTAAAAA
GGGCACGCTATCAGTGAAAGTTATCGTGACGTGCTATGGCAGAAAGTATG
ATTGATAAACTCGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGATT
TAACAATACAGGCCAGATATCAACAGTCTCATGTTTCGACCAATTGTCCC
AAGTTAGCTCAGTTGAAGGTAGCCCACTACTCTAGAGCTTTATAGCAGAG
CATAGGTTGCTGGGCGACCGCCTCAATAGGCCATTGGAAAATCAGATAAG
AGCAAGCGGGTAAGTACCGCACGAGACGAGAGTGATTAATGCAAGCAATT
GCAATTGAATCAATCAAACGTATAATATAATGAATACAATTGAATGTAAA
AAAACACTCAAATTTTTATCAGCATTGGGCCGATAAGCTTCAAACCCTCT
ACCCCTATCGAGTTGATCTCACCTTTGCACCCGTTATCATTGATCTTGCC
TTTGCACCCGTTATTGTTGATCTCGCCTTTGCACCCATTATCGTTGAGTT
TTTGTCTATTTGCACCAACATTGAGTTTGTTCATACAACGCATTGATATT
GTCAATCAAAACGAAAGTTAAAAAGGTGCAATGAAGTTGCAACATTTTGA
AAGAAAAGGCAGCGCCCTGGCCAATGAAAAAGTAGGTTTTTTTAAGCTAA
TTAAGCTAATTCAAAGCTGTACTTTTAAAGTTGCAAATTTGCGTGCGAAG
GTGAAAGCAAGTGAAATTGCATGCTTTTAGTGGAGTTTTTGGACGAAATG
AGGAAGAAATTGGCAGAAAAGATTTTCTTCCTAATACTTGTTTTTTTATT
GGTATGTAGTTGGACTCAGTCTCGGCCTTATCAGCCCAATGCCAATAAAA
AATTTGAAAGTTTTTTGTCAAGGGCCCCTAATCGGAGCAATCAAACGGCA
AATCCAGGGTAATATTGCTTTCGATTGAGTTCATTTGGCGTGCGATTCCC
TCGATTGACATCGTCTGGCTATATAGAACCCCCTCTGAACCCCCACCAGA
GACCAACAGTTTCATTAATGCACAGCTTTGCTGAGCAAATATCCTCATTA
GAAACTCAATCTAAATTTACAAAAGAAGCCATAGCTCAAAGTTCTTAGAA
AAATAACTACCCACTAGAAGTAGATGAGATTCAATCTGATCCAAAGGAAG
ACCTCCCAAATCGTATGCCACCTGTAAAGGAAAATATTAATGTTTTTCTA
TAGACTTTTTGTAGGAGGTGATGTCATGTCGTTTTATGCAAGTTTTACTT
GTTGCATAATTTAGTTTGTCGACTTTTATATTATTTTTTTCATTTTAAAG
ACATTATTTAAAATTTTTGTAGGTTCAATCCTTGGCAAAGTGATTCTGAG
CAAATCAAAAATATATTTGATGTACAAATTGAAGTTGCTGACTCACCTTG
CATTTGTATGTTTTAATTTTGAGGTTCAGATTTATAATTGTTTTCTCAAT
TGTACTATAATTGTACTAAACTAAANTATGTTTTCAGATTTATAATTGTT
TTCTTAATTGTACTATAATTGTACTAAACTAAAATGAAACCTTTGTTTTT
GATTTCAGTCAAATCCGCCAAATCCGCCAAATTTTCTTTCTGCCAAAATT
TCTTCCTTTAAGGTAGATGATATTTAATTAGAAGTTGTTTTTGTGGAATA
TTTTAACTAATTTTAAAACACGTTTCTTTTTTCAGGGGAATTCAATCTAG
AGCATGCAGATCATTTTCCAGATGTGATATTTGCTGAAGAAGACGAAGAG
TTTAATCCGGATATTACCTCATACACTGTGCATTTTTAAGAATCAGTTAT
TTTTATGTTCCACAATTCCTCAAAAACTTTCGATGGTCCACAGCAGTTTT
TAACTTAAGTCAATCTCTTGACCAAACTTTCCTCAGAACAGAACTTCTTG
TAAGCCTTTTTGATCATTAGAAATTGGATTCCCTTCTTCCACTTTTGTAA
AACAAACATTTTATCCTTGAAAATTTCAGAGCTTGTCTGACTGGGACATT
AAGAAAGACACAAAATTGCAAGAGTTTGTTCTGGAACTTTCTCGATCATA
TGTGCAATATCAAAAAGAGAAACTTCAATGCTACGATCAAATAAAAGAAG
AATTTCAAATATTCTTCAAGGACCATTCAGAACTGGCTAATGAATGTGAA
CTACAGATTGCGAAAGGAGGGCAGAAAGCACATGTTAGTATATTGAGCAG
ATCGCAAAGGTTTAAGCTATAACCTTTCAAATAAATATTTTTACATTTTT
AATGTTTACAAAACATCATAAAAGATATATGACTTTATTCTTCTTTTCAG
ACATACAGTGATATCATAACATTTTTGGTTCCGATCAAATGTGACTGTTC
AGATGTACCACCAACATTCAAAAAGGTATCATAGTTAATATTGGTATTTG
AGATAATTGTTGCAAGCTTGATTTGAAGTGAAATCTTATTTACAGTTTTG
AGCTTTTTTTTCCAGCTAAGTAGTTGGTATTAGTTAATTTTAGTTAGATT
TAGAACCATTATTGAAGAGGGCCTATTGAAAGAAGTCATTGCATTGATGT
CAAAAGAGGGATATGCATTGACTATAAACATCCAACTTTCTTTCAGCCAA
GATTTTTTATTCATTTTTTTTTAAATCACTTTTTTTTCATTGTAGGCATC
TTCTCTCAAAAAATGCCAAAAATGATATCCCAAAGCCGACGTCCCCTTTA
ATTCACATTTAGAATAAGCAGGGCGAAAAGTGGGCCATCTAAACCAGAGC
TGAGTCGCCAAGCTTGCATTGATCATTGTGATCAGAGTGATAGATGCTTT
CTCTTCTTTTTTAGAAGAATTCAGGGAAGGATGTATCATATCTTCACATA
AAATACGAATCACCAAATCAAACATCAGTCTCCTCAAAATTGATTCTCAA
CAACTCGCTCATCAGGTAGCTGGAAAAGTAGTTTTTTATCTAACTATAAT
TTTCCTGTTGTTTTGGTTAGCTACGAAATAGATAAAGTTATTCTGGCTAA
GATCCTAAGCGTGAGAGGTACGTTTGCCATGTCTTATTGTCTAGATTGAC
TTTTCGAAATTTTCATCGGGAGCAATCAAGGTCGTAATATTCGATAAAAA
AAGGAAAAAGCCCACAAATCTTATAGCCACAAACGATAGGGTCTAACTGC
TCTAACTTAGGTTGGAAGGGTCAAGTTTTAACGCTGAGGATCCAAAAGCT
CAAAAATGGTCCAATACGGCTCAGAATATAGACTGGAAGTCTATAAACCC
CTTCCATATTGAAATATTCGAATAAATTTAACAAATAGCCTAAAAGCAAC
TTTCTCGTCCGAACTTTTAATTTCGAAAAACGAGAAAATTTTCGCCAAAA
TTCTCAATATATTTTGACGCAGATTGTGGGAGGTTAGATTTTATCACTTG
CCTTAGAAGAAAGTCTCCGCTGCTAAGGGGTAATATCAAGCAGTTATTGG
ACAAAGTCGAATCCAATATTTTTCATATTGGATGAGACTGCGTCCAAATA
AATGGTTTATTATCCGTTTATCGCTAAAACATTTCTCGTTTTCAAACATA
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAATATGTAGCCTCCATGGAAGCTATATATTCGAAAA
TATTGGACAGAAAAGAAGCCAATCAAATGTCGCTATTTACGCGCGTCGGA
TAATAAGTGCAATTATCAATATTTTGTTCTTTTAGTGTGTTAGGTGGCAG
CTCAAATCTTCGGATTCCATCATATGGTTCTTTAAGTTTATCAAAGTATG
TGGAGAAAGTGACTAAGCTTGTACAAAATACTGTTAGTATCTTTTATTTT
TATAATTAATAATGCACTTTAAGACTCTCGCTTATTCGAACTTCTATGAT
TCAAATCTCTCTATAATTCGAATATATTCCCCTTCCCCATCAAGGAAAAA
CTCTCTTAACATAATTTCAATAATTCGAATTTCTCTGTAATTCGAACAAA
TAAGATTCCCCGTTCGAGTTCGAATTAGCGGGAGTCTACTATAATAAAAC
GTAATACGTAATTGGGTAAGAAAAAGTCGAAAAAATCCTTCCATACCAAT
TCCCCTATCTTTAATTCCGTATTAAAAGGTATTTTGAATTATTACAAAGT
GTGACCAATTTCAAATGTTAAGAATTCCTACATTTTTCAAGAATTTATAA
TATTTATTTTTGATAAGCTCAGCTAGAATACTAAAATGCAGAAAATGATC
TTTGTTGTGTCGTCTCTTCTTTGTTAGGTCGAAATGGTCAGTCAGGGATA
TCAAATGCGAAGACATTTCATATCATTACTAATCAAAGAACTTGGAAGGT
TGGACAGAAAATTTTTTGAATTCTTTGATTCATGAAAGGGTCTGGGTTTG
AGTTTACAATAAGATCTAATGTCTCTAAAATTTTTAAGTCTGAAATCAAT
GCACTGCAGTCAATCTACCTTGGTAAACTTAGAACCAAATCTCTCGTGGT
GTTTTAATCTGATAATGCTGAAATAGCCGAAGTCTCTCCTAATCAAAGCC
TAATTCGTACTAAGGACTATATTATTACAAGTCTAATGGAAAATATGTTT
GTTCATTTTCTTAAGAAAACAGTTGCTTTGAGCCCACAAAGCTAAAATGT
TCTTAAGTTGTTGTTCTTAATATTTTGGCCATCGAAGTCTTATGTTCTTA
TATAGTTTGTTCTTATAAAAAAAAACTTCTATCTTACAAAACAGGAGAAT
TATTTCAGAAGGGATTAACTTGATTAAATTATTTCTTTTTGCTTTGATAT
GATAGCTCAGCAATAGTTGAATATGATACCAAATTGTTCCTTGAAGCATG
TTTTATGGTGGAACGCGAGGATGGTTTTGCTTGTTTGCTTCTTGGTAAGA
TTCATCAATGTTATTTGTGAGTTTATTGTGAGTTTATTGTGAGAATCTCT
CCATGTCTGTTACTGCTGTGTCTTTTAACCCTTGGGCCGGATTTAGCTGA
CATGTTCTATACTTCATGATTAAAATTTTGATTTAAACGGGATAACACCT
CTCTAGAAAACTAGGAAAGGGAGGTATAAACGAAAGGAGGAATTGCTTCT
TTCTAGTCGGAAATGGATACTTTGCTTTTTTTGTACCAATTACTTTGCTG
GGTGTAATGAAGAGGAGATCGTTTAAGAAGAGGGAATCAGATGCCAGTCT
GCAGTTAGGCTGCACGCATCCAATTCCCGTACGAGAGTCACCCTAAATTT
GAGGTTACCTGTTTCAATTTATAGCGTGTTTTTATTGCCATAACACAACT
TTGATAAGACTGATTTGACTCTCCTTCGTTTTTGGAGTGAAGATACACAA
AAAGCGTAAACGTTCAATCAGCCTGTTGGGGGTAACTCTCGGACGGGAAT
TTCATTCGCGATACGCATCCCCTCTATCAAGATAAGAGATGGGATTACAA
AAGGGTGATACCAATAGGCTTCTTCAGAAATAGTCCCCCGCTGTTGAGGA
TATCGGATATCCAGGGGATTAACGATTTTTGTTCTAAGATGGATATCCAG
GGGGTTGAGCATATTTTTAAGAGTGAATATCCAGGGGGTCTTTACTAATA
AAGTAGGGGTTCGATACTTCGAAAAATCAATATCCTCAACAGCGGGGGTA
AAATCTTTTTCTGGAAAAGCCCAATGGAATGGTTTATGTTTCAGTTTCAT
TGACGCGTCTTTATTCTGAAAAATCTCCGAAGATGGTGCTACAATCCATT
TACAATGTGGACGGTGCTTCAAAGTTACCGAAACTTCAAGTGCCCTTAGA
AGGATGTTTCCAAGATGTTGCTGGTGCTGGTGATGGTGTTGGAGAATGCA
ATGAGAATGAAGACATCAGAGTGGCGTTCATACGGTAAGTCCGGTTAATG
AGATGTAGCCAGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032103XLOC_032103Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050670-exon-scaffold_182-1575043694:145241..145296TCONS_00050670-exon-scaffold_182-1575043694:145241..145296Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1575043694:142542..142624TCONS_00050670-exon-scaffold_182-1575043694:142542..142624Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1575043694:141764..142261TCONS_00050670-exon-scaffold_182-1575043694:141764..142261Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1575043694:141572..141646TCONS_00050670-exon-scaffold_182-1575043694:141572..141646Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1575043694:141032..141132TCONS_00050670-exon-scaffold_182-1575043694:141032..141132Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1575043694:139915..140011TCONS_00050670-exon-scaffold_182-1575043694:139915..140011Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1575043694:139399..139469TCONS_00050670-exon-scaffold_182-1575043694:139399..139469Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1575043694:138853..138941TCONS_00050670-exon-scaffold_182-1575043694:138853..138941Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1575043694:137832..138052TCONS_00050670-exon-scaffold_182-1575043694:137832..138052Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:145241..145296TCONS_00050670-exon-scaffold_182-1510915933:145241..145296Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:142542..142624TCONS_00050670-exon-scaffold_182-1510915933:142542..142624Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:141764..142261TCONS_00050670-exon-scaffold_182-1510915933:141764..142261Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:141572..141646TCONS_00050670-exon-scaffold_182-1510915933:141572..141646Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:141032..141132TCONS_00050670-exon-scaffold_182-1510915933:141032..141132Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:139915..140011TCONS_00050670-exon-scaffold_182-1510915933:139915..140011Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:139399..139469TCONS_00050670-exon-scaffold_182-1510915933:139399..139469Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:138853..138941TCONS_00050670-exon-scaffold_182-1510915933:138853..138941Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1510915933:137832..138052TCONS_00050670-exon-scaffold_182-1510915933:137832..138052Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:145241..145296TCONS_00050670-exon-scaffold_182-1491911889:145241..145296Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:142542..142624TCONS_00050670-exon-scaffold_182-1491911889:142542..142624Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:141764..142261TCONS_00050670-exon-scaffold_182-1491911889:141764..142261Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:141572..141646TCONS_00050670-exon-scaffold_182-1491911889:141572..141646Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:141032..141132TCONS_00050670-exon-scaffold_182-1491911889:141032..141132Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:139915..140011TCONS_00050670-exon-scaffold_182-1491911889:139915..140011Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:139399..139469TCONS_00050670-exon-scaffold_182-1491911889:139399..139469Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:138853..138941TCONS_00050670-exon-scaffold_182-1491911889:138853..138941Clytia hemisphaericaexon
TCONS_00050670-exon-scaffold_182-1491911889:137832..138052TCONS_00050670-exon-scaffold_182-1491911889:137832..138052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_182supercontigscaffold_182:137832..145296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.318672	0.000149638	0	0	0	0
Blast
[Close]
BLAST of TCONS_00050670 vs. Swiss-Prot (Human)
Match: BABA2 (BRISC and BRCA1-A complex member 2 OS=Homo sapiens GN=BABAM2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.500e-21
Identity = 72/249 (28.92%), Postives = 122/249 (49.00%), Query Frame = 2 
Query:  419 P*KFQSLSDWDIKKDTKLQEFVLELSRSYVQYQKEKLQCYDQIKEEFQIFFKDHSELANECELQIAKGGQKAHTYSDIITFLVPIKCDCSDVPPTFKK---KNSGKDVSYLHIKYESPNQTXXXXXXXXXXXXXXXXGGSSNLRIPSY-GSLSLSKYVEKVTKLVQNTVEMVSQGYQMRRHFISLLIKELGSSAIVEYDTKLFLEACFMVEREDGFACLLLVSLTRLYSEKSPKMVLQSIYNVDGASKL 1153
            P   Q+L+ W+      L   V EL + Y Q+Q  +L+   ++  E+Q   ++     N   ++I  G +   T      FL+ +  D S++P    K   ++ G+DV+ L + +E    T V  KL L+  +   LGGSS L IP++ G   L  YV +V  L+ N V+ V QGY  RR +I+  +   G + +VEYD + F +   ++  +D F  L+ + L   +    P +  QS+Y+   + +L
Sbjct:   96 PSALQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGEN---MEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFG-TGVVEYDAEGFTKLTLLLMWKD-FCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQL 339
The following BLAST results are available for this feature:
BLAST of TCONS_00050670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BABA28.500e-2128.92BRISC and BRCA1-A complex member 2 OS=Homo sapiens... [more]
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