TCONS_00050652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050652
Unique NameTCONS_00050652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050652 ID=TCONS_00050652|Name=TCONS_00050652|organism=Clytia hemisphaerica|type=transcript|length=329bp
GTCTTTTTCCATGAGGTGATACACTGTTTATGACTAATGTATCAAGGTTT
ACAGATTCTGGGGTTGCAGACTGACTGGTTTCATTCTCATTGCTTGCCTA
CTGTCTTCTAAGCCTTCTGTTCTTGTTGTATGTAAGCttaactttaattt
ttaaagtgtcCTGTTCTTTTCTCATGTTTTCAGAATTTcgctttctcttt
tttttgccaATTAGTTTATTTCTTTGTAAAATTGATAACTCAGATGTTTG
TCCCTCACTTTATCTTTTTCTGGCCTGTTGTAATCTCTTACTCGCTCTTC
CCTTCTTGCAATACTCCTCTTTTGCCTCA
Run BLAST on NCBI

transcript from alignment at scaffold_180:86358..86686

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050652 ID=TCONS_00050652|Name=TCONS_00050652|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_180:86358..86686 (Clytia hemisphaerica)
TGAGGCAAAAGAGGAGTATTGCAAGAAGGGAAGAGCGAGTAAGAGATTAC
AACAGGCCAGAAAAAGATAAAGTGAGGGACAAACATCTGAGTTATCAATT
TTACAAAGAAATAAACTAATtggcaaaaaaaagagaaagcgAAATTCTGA
AAACATGAGAAAAGAACAGgacactttaaaaattaaagttaaGCTTACAT
ACAACAAGAACAGAAGGCTTAGAAGACAGTAGGCAAGCAATGAGAATGAA
ACCAGTCAGTCTGCAACCCCAGAATCTGTAAACCTTGATACATTAGTCAT
AAACAGTGTATCACCTCATGGAAAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032091XLOC_032091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050652-exon-scaffold_180-1491911889:86358..86686TCONS_00050652-exon-scaffold_180-1491911889:86358..86686Clytia hemisphaericaexon
TCONS_00050652-exon-scaffold_180-1510915933:86358..86686TCONS_00050652-exon-scaffold_180-1510915933:86358..86686Clytia hemisphaericaexon
TCONS_00050652-exon-scaffold_180-1575043694:86358..86686TCONS_00050652-exon-scaffold_180-1575043694:86358..86686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_180supercontigscaffold_180:86358..86686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.590579	0.372449	0.386325	2.58035	0	2.09142	0.380088	0	1.24564	1.09554	0.29952	0.393786	1.10862	1.50005	0.503618	0.720612	0.221934	0.9099	0.206081	0	2.61722	2.98638	0.6707	0.308175	3.34652	0.450298	0	0.802057	0	0.334317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top