|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050621 ID=TCONS_00050621|Name=TCONS_00050621|organism=Clytia hemisphaerica|type=transcript|length=4459bpRun BLAST on NCBI protein sequence of TCONS_00050621-protein >TCONS_00050621-protein ID=TCONS_00050621-protein|Name=TCONS_00050621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1154bp PTITVEVICHNVTWHNDLLDDRNFKQQAISKIVIEALSDLYGTPLLPSSARun BLAST on NCBI transcript from alignment at scaffold_18:235488..251987- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050621 ID=TCONS_00050621|Name=TCONS_00050621|organism=Clytia hemisphaerica|type=transcript|length=16500bp|location=Sequence derived from alignment at scaffold_18:235488..251987- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_18:235488..251987- >TCONS_00050621 ID=TCONS_00050621|Name=TCONS_00050621|organism=Clytia hemisphaerica|type=CDS|length=48510bp|location=Sequence derived from alignment at scaffold_18:235488..251987- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050621 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 4.351e-24 Identity = 71/165 (43.03%), Postives = 93/165 (56.36%), Query Frame = 3
Query: 3915 YGEWTSWSLCEVXXXXXXXXXXXXXXIP---FGG--CSGPSMQVGDCNTDPCPIYGNWGQWGEYSECTKTCGFGVERRLRKCDSPKPQFGGEECPGTDVDEIEGCNPMPCPVHGQWGSWGEFEECLKPCGNQSLRISRRYCDSPKPLFDGLDCVGNNTKSEKCDF 4394
+ W SWS C VSCGGG +R+R CS P +GG C G +Q CN+DPCP +GNW W + C++TC G RR R CD+P P GG C G D +I+ CN CPV G WGSW + +C CG + +R CD P P+ G C G+ T+ +C+
Sbjct: 4703 WATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPD-SQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGE-KTRKRLCDHPVPVKGGRPCPGDTTQVTRCNV 4865 HSP 2 Score: 107.457 bits (267), Expect = 5.120e-23 Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 3
Query: 3912 GYGEWTSWSLCEVXXXXXXXXXXXXXXIPF---GG--CSGPSMQVGDCNTDPCPIYGNWGQWGEYSECTKTCGFGVERRLRKCDSPKPQFGGEECPGTDVDEIEGCNPMPCPVHGQWGSWGEFEECLKPCGNQSLRISRRYCDSPKPLFDGLDCVGNNTKSEKCD 4391
G+ +W++W C V+CG G +RSR C+ P GG C G +++ +C PCP+ G+W +W + ECT++CG G + R R C++P Q GG C G V EI CN PCPVHG W +W + C + CG + + R C++P P F G C G T+ + C+
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAV-EIIMCNIRPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN 4693 HSP 3 Score: 102.834 bits (255), Expect = 1.295e-21 Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 3
Query: 3999 FGG--CSGPSMQVGDCNTDPCPIYGNWGQWGEYSECTKTCGFGVERRLRKCDSPKPQFGGEECPGTDVDEIEGCNPMPCPVHGQWGSWGEFEECLKPCGNQSLRISRRYCDSPKPLFDGLDCVGNNTKSEKCD 4391
FGG C G Q+ CN CPI+G W W +S C+ +CG G +R R C P PQ+GG +C G+DV + CN PCP HG W W + C + C +R R CD+P P G C G +++ ++C+
Sbjct: 4677 FGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQS-DFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMR-RYRTCDNPPPSNGGRACGGPDSQIQRCN 4807 HSP 4 Score: 99.7525 bits (247), Expect = 1.224e-20 Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 3
Query: 3918 GEWTSWSLCEV------XXXXXXXXXXXXXXIPFGG--CSGPSMQVGDCNTDPCPIYGNWGQWGEYSECTKTCGFGVERRLRKCDSPKPQFGGEECPGTDVDEIEGCNPMPCPVHGQWGSWGEFEECLKPCGNQSLRISRRYCDSPKPLFDGLDCVGNNTKSEKCD 4391
G W+ WSL E R R S+ GG C G ++++ CN PCP++G W W + C+++CG G + R R C++P P FGG C G + +++ CN CP+HG+W +W + C CG + R R C P P + G C G++ +S+ C+
Sbjct: 4587 GSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAET-QMQVCNERNCPIHGKWATWASWSACSVSCGGGA-RQRTRGCSDPVPQYGGRKCEGSDVQSDFCN 4750 The following BLAST results are available for this feature:
BLAST of TCONS_00050621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.