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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050609 ID=TCONS_00050609|Name=TCONS_00050609|organism=Clytia hemisphaerica|type=transcript|length=399bp
ACGCTTTGGAAATGTTATTACTGGCCTCCCGTTCATGGTCAATGGAGCAA
TTGGTCAACTGTAAACGAAACATTCCAAAACGACACGACGTGCCCAGGGA
AACTTTCGTTCGCAACACGACAGTGCGATTCTCCGACACCAGAGTATTGC
GGAATGTATTGTGGATCCAGTAGTATCAAGATTGATATATTTCCTGTGGA
TGGTGGTTGGTCTAGCTGGAGTGGTTTTTCTTCTTGCACACTAAGTTGTG
GAAGTGGTACGCAGTATCGAACACGAGCTTGTGATAATCCATCAAGTCAG
TATGGAGGAAAGTATTGTGAAGGCTATGAACGAGAAGTAAAATCATGCAA
TATCAATCCATGTTCTGACGTCTTGAAGAAATCAAGGATATCAGCGGTG Run BLAST on NCBI transcript from alignment at scaffold_18:34063..37445- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050609 ID=TCONS_00050609|Name=TCONS_00050609|organism=Clytia hemisphaerica|type=transcript|length=3383bp|location=Sequence derived from alignment at scaffold_18:34063..37445- (Clytia hemisphaerica)
ACGCTTTGGAAATGTTATTACTGGCCTCCCGTTCATGGTCAATGGAGCAA
TTGGTCAACTGTAAACGAAACATTCCAAAACGACACGACGTGCCCAGGGA
AACTTTCGTTCGCAACACGACAGTGCGATTCTCCGACACCAGAGTATTGC
GGAATGTATTGTGGATCCAGTAGTATCAAGATTGATATATTTCCTGGTAT
GCGACACAATTTTTCAAATAGATATACTTTTGTAAATATGGAAATATGAC
TTTTTTATATTTCCAAAGTTGTGGAAATATCATATATCATGATATTTCCA
TATCATGTTTCATGATATTTCCAATTCTGAAATTCATTGAAACATCATAT
TTTCAAAATATTTCCAATTTTTAAATTTGAAATATTTTGAAAATATGATA
TTTCAGATTTGGAAATATCATGAAATATGGTATTTTCATAACTTAGAAAT
AAAGAAAAGTCATATTTCCATATTTACAAAAGTATATGGAAATATAATAT
TTTCAAGATATTTCCAGGATTGGAAACCTCTTATTTCGCCCAGTGGAGGG
GGCATGGAAAAATTGGTTTTTAGAATCACACCCTTACACTACAGTGCAGC
AAAAAATTGGTAATATTCATACCCTTACAGTGCATTTTCCTCGAATTTTC
TACTCTTTTTGAGCAAAATAATCCGAATTTTCGGGCAAAAATGTGCAACT
GTTCCTGGATTTGCTGAAAATTCCACCCTGCATCTAAAAAAAGTCAACCC
TACAGTGCGGTTCTGTTATGTTTAAAACATACCCTTAATCGCCGCACATA
CCGCCGCCGGTCAATTTGCCTGACTACCCTCCCCATCCAGACCTTACATT
CCTGTTCTATGACTTGTTTAAAAGGTTGTTATAACAGTTATTTAACAATT
ATTTCAACGGAGCTGTGAAAAAGAACAATGACTTGATGTATTTCGCAAAA
AAAAAGCTTAGACATCATTCAATCTTCTCTAAATTAGATGTATAAAGCAT
CAAAAAGTATCTTATCTTCCTACCGGTCTATAAAGCAAATATGAACCTAT
CTCTGGAACTCAGGAAATATTGGACCTTCTGAATTGAAAGTTTTACCAAT
GATAATTGACCACCTAAGTCGCTGTGAGAAATTTCAGAGGCCCCTTAGAT
GCATGGAGGGTATTTGCAATTTATCTCTTTGTTCTAGTGGATGGTGGTTG
GTCTAGCTGGAGTGGTTTTTCTTCTTGCACACTAAGTTGTGGAAGTGGTA
CGCAGTATCGAACACGAGCTTGTGATAATCCATCAAGTCAGTATGGAGGA
AAGTATTGTGAAGGCTATGAACGAGAAGTAAAATCATGCAATATCAATCC
ATGTTCTGGTAAGAGTAATCAATGCCATTGGGAAATTAGCGGGTTTATCT
TCTTACCCAGCTGGCACACAACGTTGTTTTGACGTTCATCTAACGTTATA
TGGACGTTGTGAATATTAGAAAAACGTTAAAACGACGTTGTGTTCCAGCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCAGGCAAGCA
TCAGTTGATCCCTCTGGACAACCCAAATTACCCCCGGACAGAGCAAATTC
ACCCCCCAGACAAGGTAAATTTCGATGTTTTTTCGCTACCCCCCGGACAC
TATATCCTCCTGCCCCCATGTATGAACATTTTCTGGAATAGCCCAATAAG
AATTTGTCCCATCCTTATTTTGTAAACAAAAACTTCGGTTCCCTGTAAAT
TATTTCAGCCAATTCTTGACACTCGTTGGGTTTTGGATCGAGGAGAAAAA
TGGCAAGAAGTCTCGGTATTTTCTCAGCCATATAGCGCAGAATTATAGAG
TAATCCATATGATTAGGAGCTTGGAAAGCATTAACTGCAGCGAATCCCAA
TGATGTGGTTTATGACTGATCTGGTGACGAAAAGTTTTCTTTTTATGTCA
ATCATTGCCTTTCACTCATTCAAAAAAGAAACCACCTGGCAATGAAACAC
TTTTCCGATACTTTCAGGTAATCGCCTACTCACCTAAGCCTGAAAAGCCT
TTTTAAGATACAGTGTGTCCAAATAAAAGCGGACAAATTTTTATTTATTT
CTTCTCGTTTAATTAGATTATTTTTCTTATAAGCATATACTTTATAAGAA
TCAAATCAATAACTCTCGATAGATGGTGATATACCTTTGGGAATTAGTTT
TTACAAAGTAAACGAGGGATGGCGCACAATATGAACATATTTATTTTTCT
TATAAGCATATACTTTATAAGAATCAAATTAATAACTCTTGATAGACGGT
TATGTACCCTTCGGTTACTAGAAAAATTTTTGACCCCATCTAGGTTTGTC
CACCCCCCCTGTATGGTTATAAAATAGAACAGCCCATTGCTGAAACCATA
ATCGACCAACAAATAAAGGGCAGAATCGTCAATGGACCCGTAATTAGACA
CACCCGAAAATTCACGACAAAAAGAATAAAGCGCTCCTCTCTTGATTCCA
GACGTCTTGAAGAAATCAAGGATATCAGCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050609-exon-scaffold_18-1575043694:37250..37445 | TCONS_00050609-exon-scaffold_18-1575043694:37250..37445 | Clytia hemisphaerica | exon |
| TCONS_00050609-exon-scaffold_18-1575043694:36088..36258 | TCONS_00050609-exon-scaffold_18-1575043694:36088..36258 | Clytia hemisphaerica | exon |
| TCONS_00050609-exon-scaffold_18-1575043694:34063..34094 | TCONS_00050609-exon-scaffold_18-1575043694:34063..34094 | Clytia hemisphaerica | exon |
| TCONS_00050609-exon-scaffold_18-1510915933:37250..37445 | TCONS_00050609-exon-scaffold_18-1510915933:37250..37445 | Clytia hemisphaerica | exon |
| TCONS_00050609-exon-scaffold_18-1510915933:36088..36258 | TCONS_00050609-exon-scaffold_18-1510915933:36088..36258 | Clytia hemisphaerica | exon |
| TCONS_00050609-exon-scaffold_18-1510915933:34063..34094 | TCONS_00050609-exon-scaffold_18-1510915933:34063..34094 | Clytia hemisphaerica | exon |
| TCONS_00050609-exon-scaffold_18-1491911889:37250..37445 | TCONS_00050609-exon-scaffold_18-1491911889:37250..37445 | Clytia hemisphaerica | exon |
| TCONS_00050609-exon-scaffold_18-1491911889:36088..36258 | TCONS_00050609-exon-scaffold_18-1491911889:36088..36258 | Clytia hemisphaerica | exon |
| TCONS_00050609-exon-scaffold_18-1491911889:34063..34094 | TCONS_00050609-exon-scaffold_18-1491911889:34063..34094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:34063..37445 - |
Blast
The following BLAST results are available for this feature:
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