TCONS_00050605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050605
Unique NameTCONS_00050605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050605 ID=TCONS_00050605|Name=TCONS_00050605|organism=Clytia hemisphaerica|type=transcript|length=2405bp
gaaaataggaacatgttaagaacattttttggcttaaatctcaaaaagtt
aagaacattggaaggcttcaaaaattttggctgTTCGTTTAGAAAAACGT
GTAGTATCAACAATCCGTAGATAAGTAAAACCTCAAATCTCCTAATATTG
AAAATGTTCTTCGgttttctttatctttctttctttctttctttgcaTTA
CCGATTAGTATAACTACACGTCCATGGTTCCGGCTCTTTCTTGAATGCCC
CTCTCATGAAACTCCTTAAATtacaaaatgttttaaaattcaaaacataa
tCTACTGGCAAATCAGCAAGCGTCGACTTGGAGGTCAGATTCAAGATATT
GTCTTTCTTCGACAACTTTAAGTTCTGTCTTTGGCAAAATCCATAAGAAC
TACAGCGGTATTCTTGAAATTTCCGAGTTAGAAATTCCATGGCATCTTGA
ATTGTATACACGTCCTGAATAAGGTTTAATCTATCTTTAACGGTAACCCG
CTTTTCTAGAGTCTCGTCGTTTCCACATTTCCTACATTTAACATGAACTA
GTGCCTTTAAAGTTCGGAACACACGTAAAGACAAAGATTCGGTTACATCT
GTACTAATCAGTGAGAAAAGATGAACTCTATCTTTGGGCAGCGAGAACTC
GTCGTGGTTATGTTTTTGTGGTGGGTTTCTTGGGAATACGGATATTTGAA
TATTCATCATTTCCGATAACCTGTTTTCTAGGTCTTTGACTGTAGATGTT
TCTAAAATGTCGATGGTTTCCGGCAGCCCAATTCTCCCTCCGTAAGCGCA
ATTGAGATAAACTGTGACGTTTTTAGGCTCAAGTGTTATCAAGTTGAAAT
GCAAGGCGTTTTGTTTTCGTTCTTCTTCGGTTGTGCTATGCTTGTAAAGC
ATTAGCAGAGACTCGTTCGAATCTGGTTCAATCTTTCGATCCTTTGTCAT
GTAAACTTGACACCGTTTAGAGATTTCCCATTCAGATTCAATAAATCTTC
TCAATTTGTCTAAAGTGTTAAAAGTTGACACATCAAGCTCTATGACTTTT
GTTAAAGATTTGATGACCAATTTCTTGAAACCATACATTCTCATATGACA
GTCTTGATCTTCACCAGGCTTCGCTTTCGTGTAATTCAAAGAACATTTGA
GTTCAATATCCTCGCTGAATACACCGCCGTTGTAAAACAATTCTTCGATA
ACAAGTCCTCTGTATAAGGTTTTCCCAGATTTGGACAAATCGTagatgaa
attttcaccaaGTTTATCACTGATAACGTGTACGATCTCTCCATATCCTG
CTGACGGGTTCAACATGACAACCAATGCGTTTTCAACAATCGTCCAATTT
GTATCTAAATCTTTAATAGTCATTGACCGCACTTCTTGTAatctaagctc
ttcaaagtgaGATCTTGAATGTTCTGAAAGCTCTTTTCCGGGTGCTTTTG
GGAAAGTTTTGTAAGCTACATGGATGTCAATAGAATACGCGTTGGTAATG
AGTAATGATGTCAGATTTGTTGATCGCGTTAACTTCTTTTCGGCGTGATA
AAGGACTTGGTTTTGTAAAGGAATTTCCAGTTCATTTTGAATGAATGTCA
TTAGATTCACTGTATCGCAGCTTTTGCTGTCTGGATACCATTTGGTGATC
TCCTCATCTCGAGTATTACATACCTTAATGAATGGAAGGCGTAGAATGTT
TGAACTGTTTGACTGTTGTTGAACTGTATTTGAGGGTTGACTGAATACTC
CTATGTACACGTCTAAAACCTGCTCACGAACCCCATATTCATTTAGAGTT
TCTAACCAATGTTCAGTATCCTTGAGAAAAGATCTTTCTTTAAAGCTCTC
TATATAAAGCAGTAAAGATTCATTCGGATCTGTGTTAAATTTGTCACAAA
TCATTGCTTGAAATCCTTTAAGTGTACACAACGCATGATGACGTTGAAAC
TCGTCCCAACCTATTTCAATAACATTGTTTTCTATGGTGTATCTTTTCGG
AAAAACTCGAATTTTTGGAAATACGAAAGATTTCTTCCTGTCATCAGCGA
AAGGGAATAATGATAAATGTTCTTTGATGGCGAGACATTTCAAATCGATT
TGTATCTCAGCAACCGTTTCGGCTGTTGGATGCTCTATATCGCTAGTGAA
AACCAGGGTTTCATTGTCCCTCAAATAAATCCAATCTTGATTTACCTTTC
TTAAGATACATTGGTTTTCTATTGGTAAGTCAAGTTTCCaaactaaatga
tatttcatactGAGAACCGTCGTCTCTTCATCCTCGACAAATGTTAAATC
GGTATCGCGGTTTTCACCACATTGAACTTTGAAAGTGATTTGCCGTGATG
ATGGATTTTGGCTGTCCATTCCGTCTCAGATTTTACTGTAGGTTTTTTCT
CTATG
Run BLAST on NCBI

transcript from alignment at scaffold_18:205465..207980+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050605 ID=TCONS_00050605|Name=TCONS_00050605|organism=Clytia hemisphaerica|type=transcript|length=2516bp|location=Sequence derived from alignment at scaffold_18:205465..207980+ (Clytia hemisphaerica)
gaaaataggaacatgttaagaacattttttggcttaaatctcaaaaagtt
aagaacattggaaggcttcaaaaattttggctgTTCGTTTAGAAAAACGT
GTAGTATCAACAATCCGTAGATAAGTAAAACCTCAAATCTCCTAATATTG
AAAATGTTCTTCGgttttctttatctttctttctttctttctttgcaTTA
CCGATTAGTATAACTACACGTCCATGGTTCCGGCTCTTTCTTGAATGCCC
CTCTCATGAAACTCCTTAAATtacaaaatgttttaaaattcaaaacataa
tCTACTGGCAAATCAGCAAGCGTCGACTTGGAGGTCAGATTCAAGATATT
GTCTTTCTTCGACAACTTTAAGTTCTGTCTTTGGCAAAATCCATAAGAAC
TACAGCGGTATTCTTGAAATTTCCGAGTTAGAAATTCCATGGCATCTTGA
ATTGTATACACGTCCTGAATAAGGTTTAATCTATCTTTAACGGTAACCCG
CTTTTCTAGAGTCTCGTCGTTTCCACATTTCCTACATTTAACATGAACTA
GTGCCTTTAAAGTTCGGAACACACGTAAAGACAAAGATTCGGTTACATCT
GTACTAATCAGTGAGAAAAGATGAACTCTATCTTTGGGCAGCGAGAACTC
GTCGTGGTTATGTTTTTGTGGTGGGTTTCTTGGGAATACGGATATTTGAA
TATTCATCATTTCCGATAACCTGTTTTCTAGGTCTTTGACTGTAGATGTT
TCTAAAATGTCGATGGTTTCCGGCAGCCCAATTCTCCCTCCGTAAGCGCA
ATTGAGATAAACTGTGACGTTTTTAGGCTCAAGTGTTATCAAGTTGAAAT
GCAAGGCGTTTTGTTTTCGTTCTTCTTCGGTTGTGCTATGCTTGTAAAGC
ATTAGCAGAGACTCGTTCGAATCTGGTTCAATCTTTCGATCCTTTGTCAT
GTAAACTTGACACCGTTTAGAGATTTCCCATTCAGATTCAATAAATCTTC
TCAATTTGTCTAAAGTGTTAAAAGTTGACACATCAAGCTCTATGACTTTT
GTTAAAGATTTGATGACCAATTTCTTGAAACCATACATTCTCATATGACA
GTCTTGATCTTCACCAGGCTTCGCTTTCGTGTAATTCAAAGAACATTCGA
GTTCGACNTTCGTTAAAGATTTGATGACCAATTTCTTGAAACCATACATT
CTCCTATCACAGTCTTGATCTTCGCCAGGCTTGGATTTCGTGTAATTCAA
AGAACATTTGAGTTCAATATCCTCGCTGAATACACCGCCGTTGTAAAACA
ATTCTTCGATAACAAGTCCTCTGTATAAGGTTTTCCCAGATTTGGACAAA
TCGTagatgaaattttcaccaaGTTTATCACTGATAACGTGTACGATCTC
TCCATATCCTGCTGACGGGTTCAACATGACAACCAATGCGTTTTCAACAA
TCGTCCAATTTGTATCTAAATCTTTAATAGTCATTGACCGCACTTCTTGT
AatctaagctcttcaaagtgaGATCTTGAATGTTCTGAAAGCTCTTTTCC
GGGTGCTTTTGGGAAAGTTTTGTAAGCTACATGGATGTCAATAGAATACG
CGTTGGTAATGAGTAATGATGTCAGATTTGTTGATCGCGTTAACTTCTTT
TCGGCGTGATAAAGGACTTGGTTTTGTAAAGGAATTTCCAGTTCATTTTG
AATGAATGTCATTAGATTCACTGTATCGCAGCTTTTGCTGTCTGGATACC
ATTTGGTGATCTCCTCATCTCGAGTATTACATACCTTAATGAATGGAAGG
CGTAGAATGTTTGAACTGTTTGACTGTTGTTGAACTGTATTTGAGGGTTG
ACTGAATACTCCTATGTACACGTCTAAAACCTGCTCACGAACCCCATATT
CATTTAGAGTTTCTAACCAATGTTCAGTATCCTTGAGAAAAGATCTTTCT
TTAAAGCTCTCTATATAAAGCAGTAAAGATTCATTCGGATCTGTGTTAAA
TTTGTCACAAATCATTGCTTGAAATCCTTTAAGTGTACACAACGCATGAT
GACGTTGAAACTCGTCCCAACCTATTTCAATAACATTGTTTTCTATGGTG
TATCTTTTCGGAAAAACTCGAATTTTTGGAAATACGAAAGATTTCTTCCT
GTCATCAGCGAAAGGGAATAATGATAAATGTTCTTTGATGGCGAGACATT
TCAAATCGATTTGTATCTCAGCAACCGTTTCGGCTGTTGGATGCTCTATA
TCGCTAGTGAAAACCAGGGTTTCATTGTCCCTCAAATAAATCCAATCTTG
ATTTACCTTTCTTAAGATACATTGGTTTTCTATTGGTAAGTCAAGTTTCC
aaactaaatgatatttcatactGAGAACCGTCGTCTCTTCATCCTCGACA
AATGTTAAATCGGTATCGCGGTTTTCACCACATTGAACTTTGAAAGTGAT
TTGCCGTGATGATGGATTTTGGCTGTCCATTCCGTCTCAGATTTTACTGT
AGGTTTTTTCTCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032054XLOC_032054Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050605-exon-scaffold_18-1491911889:205465..206608TCONS_00050605-exon-scaffold_18-1491911889:205465..206608Clytia hemisphaericaexon
TCONS_00050605-exon-scaffold_18-1510915933:205465..206608TCONS_00050605-exon-scaffold_18-1510915933:205465..206608Clytia hemisphaericaexon
TCONS_00050605-exon-scaffold_18-1575043694:205465..206608TCONS_00050605-exon-scaffold_18-1575043694:205465..206608Clytia hemisphaericaexon
TCONS_00050605-exon-scaffold_18-1491911889:206720..207980TCONS_00050605-exon-scaffold_18-1491911889:206720..207980Clytia hemisphaericaexon
TCONS_00050605-exon-scaffold_18-1510915933:206720..207980TCONS_00050605-exon-scaffold_18-1510915933:206720..207980Clytia hemisphaericaexon
TCONS_00050605-exon-scaffold_18-1575043694:206720..207980TCONS_00050605-exon-scaffold_18-1575043694:206720..207980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:205465..207980 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135437	0.0630171	0.227784	0.377408	24.9751	18.8003	14.3869	15.6361	5.33423	11.5672	9.54717	5.10376	13.764	8.58457	1.88545	3.56271	1.71271	3.89079	7.66767	10.4069	2.67692	1.84144	0.856895	1.12885	1.64924	2.38397	3.72967	3.1032	0.225453	0.0775126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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