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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050595 ID=TCONS_00050595|Name=TCONS_00050595|organism=Clytia hemisphaerica|type=transcript|length=1504bp
GTCAAAACATATCTCACAAGTTACAAGAAGCGTGAAAATTAAAGGTTGCA
CGAATATCCCATTTTATAAGGTGCGCAAAAATTGAAGGTGCAAAAATTGA
AGGCAAAGAAATTAGAGGCCCGAAAATTAGAGGCCCGAAAATTAGAGGCA
CAAAAATAAAAGGCGCAAAAATAAAAGGAATTGATTGAATTAAGGTACCt
gcataaacttttttttagattactaacttgaaaaattttgagCTCCCTCA
TCTCACTTGTAGATAGGATCCTTCCCCACTGAAGGAAAAAGGCATTATCT
TGTAATTTCCTTGGTCATTCAAGGGCTTTTAATCTCTTTCTTAAAAGTTC
aggaaaaataaaaagcaaaatcctaattttgttattcaaaattttgaggt
gAACTTTTCAACTGACAACTGGGACATTATATTATACCTTTCATTTTATT
CATTATAAGAATTCACCTAGCTGTTGAAGTTTTTCTATAATCTCAGTTTG
AGAGAATCTGCCATTATTTTCATTCTGTGAAggtaaatttagatttttat
tgCTTTTGCATGTTGTTTTGATAAGTTTTTGCAATAGAAAATGTGGCAAG
GTGCATTCTAAAGGAAAGACAACCTTAATCACAGCTAAAGGTAGAGACAA
GTAGAAATGATTATATCTGATTACATCTACATTATCAGTTATTTCTTTCC
ATTTCTTTTAAATCTCTATCTACTAAACTTGGGTGCAGGGTGTAGTCTTG
AAAGTTGATGGATTTTTCATTAAAACTGATTCATGCTGTCTTCATGAATA
CATtgtgcaatatcatctttttataaaacaaatttacGAAAGGATTCATC
CGACTTAATCACTTTAATTCTTTAATAATGACTCGCCTTCTTAATACCAT
GCTCATTTTTAATAACTCTTGTGTTTTGGTAATAGATTTATCCACTTAAT
GAAAGTCATTTTCTATGAGTTTTTTCCTTATGAACTTTGCCATTAAGATA
GCTGTCCCTTATTGATGTTTTATTTAAGAGAAACCCTCCATAAAACCAGA
ATCTTTAACTTTAAACTCATTTATACACAAAATATATTTCTCAAAATCAT
CACCATATGTTTTGTACTACCAGTCTTTTAGATCCTTCGCGGAATATTCT
CATGCCAATGAGATCTGACATTGAAAACTTTGCTCAGGCAAACTGCAATT
CTTTGACTCATATCTTCAACTTCACTTTATAGACAATACATGCCANCCAA
TGAGATCTGACATTGAAAACTTTGCTCAGGCAAACTGCAATTCTTTGACT
CATATCTTCAACTTCACTTTATAGACAATACATGCCAGATTTGCTTGTAT
ATTTTCTTGTTTGTTTGTAATTGGCGTCCTGAAAGACACTATAAAATATT
TGCTGTTGAATCACATCCACTTTCCATCAGATTCCATCTAAATTAATTAA
TTGTCAATAGTTTACAAAATACGTATAAAATAATGAGTTAATTTCTTGAG
TCAG Run BLAST on NCBI transcript from alignment at scaffold_179:530091..531594 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050595 ID=TCONS_00050595|Name=TCONS_00050595|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at scaffold_179:530091..531594 (Clytia hemisphaerica)
CTGACTCAAGAAATTAACTCATTATTTTATACGTATTTTGTAAACTATTG
ACAATTAATTAATTTAGATGGAATCTGATGGAAAGTGGATGTGATTCAAC
AGCAAATATTTTATAGTGTCTTTCAGGACGCCAATTACAAACAAACAAGA
AAATATACAAGCAAATCTGGCATGTATTGTCTATAAAGTGAAGTTGAAGA
TATGAGTCAAAGAATTGCAGTTTGCCTGAGCAAAGTTTTCAATGTCAGAT
CTCATTGGNTGGCATGTATTGTCTATAAAGTGAAGTTGAAGATATGAGTC
AAAGAATTGCAGTTTGCCTGAGCAAAGTTTTCAATGTCAGATCTCATTGG
CATGAGAATATTCCGCGAAGGATCTAAAAGACTGGTAGTACAAAACATAT
GGTGATGATTTTGAGAAATATATTTTGTGTATAAATGAGTTTAAAGTTAA
AGATTCTGGTTTTATGGAGGGTTTCTCTTAAATAAAACATCAATAAGGGA
CAGCTATCTTAATGGCAAAGTTCATAAGGAAAAAACTCATAGAAAATGAC
TTTCATTAAGTGGATAAATCTATTACCAAAACACAAGAGTTATTAAAAAT
GAGCATGGTATTAAGAAGGCGAGTCATTATTAAAGAATTAAAGTGATTAA
GTCGGATGAATCCTTTCgtaaatttgttttataaaaagatgatattgcac
aATGTATTCATGAAGACAGCATGAATCAGTTTTAATGAAAAATCCATCAA
CTTTCAAGACTACACCCTGCACCCAAGTTTAGTAGATAGAGATTTAAAAG
AAATGGAAAGAAATAACTGATAATGTAGATGTAATCAGATATAATCATTT
CTACTTGTCTCTACCTTTAGCTGTGATTAAGGTTGTCTTTCCTTTAGAAT
GCACCTTGCCACATTTTCTATTGCAAAAACTTATCAAAACAACATGCAAA
AGcaataaaaatctaaatttaccTTCACAGAATGAAAATAATGGCAGATT
CTCTCAAACTGAGATTATAGAAAAACTTCAACAGCTAGGTGAATTCTTAT
AATGAATAAAATGAAAGGTATAATATAATGTCCCAGTTGTCAGTTGAAAA
GTTcacctcaaaattttgaataacaaaattaggattttgctttttatttt
tcctGAACTTTTAAGAAAGAGATTAAAAGCCCTTGAATGACCAAGGAAAT
TACAAGATAATGCCTTTTTCCTTCAGTGGGGAAGGATCCTATCTACAAGT
GAGATGAGGGAGctcaaaatttttcaagttagtaatctaaaaaaaagttt
atgcaGGTACCTTAATTCAATCAATTCCTTTTATTTTTGCGCCTTTTATT
TTTGTGCCTCTAATTTTCGGGCCTCTAATTTTCGGGCCTCTAATTTCTTT
GCCTTCAATTTTTGCACCTTCAATTTTTGCGCACCTTATAAAATGGGATA
TTCGTGCAACCTTTAATTTTCACGCTTCTTGTAACTTGTGAGATATGTTT
TGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050595-exon-scaffold_179-1491911889:530091..531594 | TCONS_00050595-exon-scaffold_179-1491911889:530091..531594 | Clytia hemisphaerica | exon |
| TCONS_00050595-exon-scaffold_179-1510915933:530091..531594 | TCONS_00050595-exon-scaffold_179-1510915933:530091..531594 | Clytia hemisphaerica | exon |
| TCONS_00050595-exon-scaffold_179-1575043694:530091..531594 | TCONS_00050595-exon-scaffold_179-1575043694:530091..531594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:530091..531594 . |
Blast
The following BLAST results are available for this feature:
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