TCONS_00050592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050592
Unique NameTCONS_00050592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050592 ID=TCONS_00050592|Name=TCONS_00050592|organism=Clytia hemisphaerica|type=transcript|length=378bp
NNAAGtgtcaaagatttgttcatTATGCCTGTTCGGAGCTTCCAGCCTAC
CAAGTACAGATTTGCCTTCAGTACAAAGCAAGGAGATTCGAATGTGCGAA
ATGCATCACGGTCACGCCAATATTATTAGAGAAGttcaaaacaagtaaac
aaagaacgaCCAATAACAAGGCAACAAATACTAGAGGTAAAGAGAAAGAT
CAAGATGAGCAATCTGTTTTCGCTAGACTGGATAGACTGGAGAAGAAGAT
CGACGATCTTGTAAACAAAGATTATTTCGTTAAAGGATCCAAACAACAGC
AGACATACGCTAGCATCGctaaagatgagctaaagaaaaaagaccaCGAT
ATAGAATCAAAGCAACAACAGACATANN
Run BLAST on NCBI

protein sequence of TCONS_00050592-protein

>TCONS_00050592-protein ID=TCONS_00050592-protein|Name=TCONS_00050592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
KCQRFVHYACSELPAYQVQICLQYKARRFECAKCITVTPILLEKFKTSKQ
RTTNNKATNTRGKEKDQDEQSVFARLDRLEKKIDDLVNKDYFVKGSKQQQ
TYASIAKDELKKKDHDIESKQQQTX
Run BLAST on NCBI

transcript from alignment at scaffold_179:429912..430289

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050592 ID=TCONS_00050592|Name=TCONS_00050592|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_179:429912..430289 (Clytia hemisphaerica)
NNTATGTCTGTTGTTGCTTTGATTCTATATCGtggtcttttttctttagc
tcatctttagCGATGCTAGCGTATGTCTGCTGTTGTTTGGATCCTTTAAC
GAAATAATCTTTGTTTACAAGATCGTCGATCTTCTTCTCCAGTCTATCCA
GTCTAGCGAAAACAGATTGCTCATCTTGATCTTTCTCTTTACCTCTAGTA
TTTGTTGCCTTGTTATTGGtcgttctttgtttacttgttttgaaCTTCTC
TAATAATATTGGCGTGACCGTGATGCATTTCGCACATTCGAATCTCCTTG
CTTTGTACTGAAGGCAAATCTGTACTTGGTAGGCTGGAAGCTCCGAACAG
GCATAatgaacaaatctttgacaCTTNN

Coding sequence (CDS) from alignment at scaffold_179:429912..430289

>TCONS_00050592 ID=TCONS_00050592|Name=TCONS_00050592|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_179:429912..430289 (Clytia hemisphaerica)
NTATGTCTGTTGTTGCTTTGATTCTATATCGtggtcttttttctttagct
catctttagCGATGCTAGCGTATGTCTGCTGTTGTTTGGATCCTTTAACG
AAATAATCTTTGTTTACAAGATCGTCGATCTTCTTCTCCAGTCTATCCAG
TCTAGCGAAAACAGATTGCTCATCTTGATCTTTCTCTTTACCTCTAGTAT
TTGTTGCCTTGTTATTGGtcgttctttgtttacttgttttgaaCTTCTCT
AATAATATTGGCGTGACCGTGATGCATTTCGCACATTCGAATCTCCTTGC
TTTGTACTGAAGGCAAATCTGTACTTGGTAGGCTGGAAGCTCCGAACAGG
CATAatgaacaaatctttgacaCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032046XLOC_032046Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050592-proteinTCONS_00050592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050592-exon-scaffold_179-1491911889:429912..430289TCONS_00050592-exon-scaffold_179-1491911889:429912..430289Clytia hemisphaericaexon
TCONS_00050592-exon-scaffold_179-1510915933:429912..430289TCONS_00050592-exon-scaffold_179-1510915933:429912..430289Clytia hemisphaericaexon
TCONS_00050592-exon-scaffold_179-1575043694:429912..430289TCONS_00050592-exon-scaffold_179-1575043694:429912..430289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:429912..430289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.40848	4.29896	9.50763	9.64558	1.68415	1.597	1.88926	2.02138	1.05238	1.75297	1.26525	2.77353	2.15949	2.31988	0.95363	1.40716	5.39733	9.36338	1.11579	1.52584	1.39941	2.97005	1.14553	4.59543	3.60624	5.23003	2.01497	1.38287	1.94058	0.564898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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