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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050589 ID=TCONS_00050589|Name=TCONS_00050589|organism=Clytia hemisphaerica|type=transcript|length=1679bp
CTTCACATAATTCAAAGATTATATTAAGTGATTTATGcaaaataaatatg
aaaaataaaaagtattgaaaataatACCTGTCAGTAAAAAAAAgcaatta
atatttttaaaaataaaagtagttAAAAAAACGTGTTATTAAAAATGCAT
TTTCATGAGTCAAATAGAATTGCACAAAATGTTATTCCGGAGGAGGAGGA
TAGCTGGCGGGTATGTGCCGCAGgatttcgaccctcggacccttagagga
actaaaaagaaggaaaatttGTTATGGATTTTACGACCCTAATTGAGAAT
AATTTGACCATTTTGATCTAAtaaggggcaaaaagttaaaagttcCCTAT
TCTATTTATTTCTGATTATTTCCAACCCTCAAAAAGACTTCAAGGTTtga
aaaaggcacccttaaagGCGCCAGATACATGTACTCTTCAATTGCCTAGG
TACCCCCACCGGGATTagcaaaagtgaaaaaacttttaaaattaacGAAC
GAATCAATAAACAAATCTAGGGTAATATCATTGGGAAAGACAAACCTGGG
TAGGTATTTATTTTATACTTTCTAACTTGTGCAGTGTATTGAACATTAAA
AAGTAGAGGAAATACACGTttgtttttaagaaactagttttaccaagcca
GCCtcgatgtttcttaagaaatcggcctttttgacataatcagcctattg
tTCATGcaattaaaaacaaacatttgttttgattggaaggtccttaaaaa
aaacgaattaaaaaatgttattttctcattctcagcctcagcattcttct
tagatgtttcttagtttttaagcattctgagcctcatgtttcttaaaagt
gtgtttcttaaaaaaaaacgtgtagttatCTTAAAACAATAATCCCATAC
CAAAGGtcactaaaaacaaaaaaataatcgcTTGACAGCCCATCATTTTA
ACAAAACGTTCAATCCATCCACCATCAATCATCACACGATTGGTCAGTTT
TCATAAAACATGGTACATAACATTTCCATTTAAACGGTACCGAAAACCAA
TACGACAAACGATACCTGCGTTTCAACAAGCCAATATATTTCTCGGGCAC
GGCAACTTGAATACCAACAAATTCCAAGATAGTTCGTTTTCCAATAAACT
CTTTAGGGATATATTCTAACTTATGACTAATCTTGGTTATTAGACCATCT
TTGACCCAGCTTGGGTAATATTTGGTGTACGTTTTTTCATGCTCAGTCCA
ACGCACGAGGTCAACAGATGCGGATCCATAAGTTGCTATCATGGTGTTAG
CAGATACTCCTCGGTTATTTATATCACGTAAAGCCTCATTTACATTAGGA
TCATCCTTAAGGAAAGAGACATCCCCATCTCCATCCCAAGGGATAATACC
ATGGTAACGAACTGCACCTAGCAACGAGCCATAATCTAACCAATAGAAAA
CCTTATTTTTCTCAAATGATGATATAATGATTTTCAGTAAAAtttcaaga
tcttttttcgattGTTCACTGAGATAGCAGTCTGTATTATACTGGTCAGT
AATTGATGGGAGTAATTTGAAATGAACCCATGCTAACAATATTAACAATA
AAACTAAAACCAGATAGCATCTTCTATGTTTTATTCGAATCATTCTTTTT
CAtgttcgttctttttttttctttttttg Run BLAST on NCBI protein sequence of TCONS_00050589-protein >TCONS_00050589-protein ID=TCONS_00050589-protein|Name=TCONS_00050589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MIRIKHRRCYLVLVLLLILLAWVHFKLLPSITDQYNTDCYLSEQSKKDLE
ILLKIIISSFEKNKVFYWLDYGSLLGAVRYHGIIPWDGDGDVSFLKDDPN
VNEALRDINNRGVSANTMIATYGSASVDLVRWTEHEKTYTKYYPSWVKDG
LITKISHKLEYIPKEFIGKRTILEFVGIQVAVPEKYIGLLKRRYRLSYWF
SVPFKWKCYVPCFMKTDQSCDD Run BLAST on NCBI transcript from alignment at scaffold_179:400618..402296 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050589 ID=TCONS_00050589|Name=TCONS_00050589|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at scaffold_179:400618..402296 (Clytia hemisphaerica)
caaaaaaagaaaaaaaaagaacgaacaTGAAAAAGAATGATTCGAATAAA
ACATAGAAGATGCTATCTGGTTTTAGTTTTATTGTTAATATTGTTAGCAT
GGGTTCATTTCAAATTACTCCCATCAATTACTGACCAGTATAATACAGAC
TGCTATCTCAGTGAACaatcgaaaaaagatcttgaaaTTTTACTGAAAAT
CATTATATCATCATTTGAGAAAAATAAGGTTTTCTATTGGTTAGATTATG
GCTCGTTGCTAGGTGCAGTTCGTTACCATGGTATTATCCCTTGGGATGGA
GATGGGGATGTCTCTTTCCTTAAGGATGATCCTAATGTAAATGAGGCTTT
ACGTGATATAAATAACCGAGGAGTATCTGCTAACACCATGATAGCAACTT
ATGGATCCGCATCTGTTGACCTCGTGCGTTGGACTGAGCATGAAAAAACG
TACACCAAATATTACCCAAGCTGGGTCAAAGATGGTCTAATAACCAAGAT
TAGTCATAAGTTAGAATATATCCCTAAAGAGTTTATTGGAAAACGAACTA
TCTTGGAATTTGTTGGTATTCAAGTTGCCGTGCCCGAGAAATATATTGGC
TTGTTGAAACGCAGGTATCGTTTGTCGTATTGGTTTTCGGTACCGTTTAA
ATGGAAATGTTATGTACCATGTTTTATGAAAACTGACCAATCGTGTGATG
ATTGATGGTGGATGGATTGAACGTTTTGTTAAAATGATGGGCTGTCAAgc
gattatttttttgtttttagtgaCCTTTGGTATGGGATTATTGTTTTAAG
ataactacacgtttttttttaagaaacacacttttaagaaacatgaggct
cagaatgcttaaaaactaagaaacatctaagaagaatgctgaggctgaga
atgagaaaataacattttttaattcgttttttttaaggaccttccaatca
aaacaaatgtttgtttttaattgCATGAacaataggctgattatgtcaaa
aaggccgatttcttaagaaacatcgaGGCtggcttggtaaaactagtttc
ttaaaaacaaACGTGTATTTCCTCTACTTTTTAATGTTCAATACACTGCA
CAAGTTAGAAAGTATAAAATAAATACCTACCCAGGTTTGTCTTTCCCAAT
GATATTACCCTAGATTTGTTTATTGATTCGTTCgttaattttaaaagttt
tttcacttttgctAATCCCGGTGGGGGTACCTAGGCAATTGAAGAGTACA
TGTATCTGGCGCctttaagggtgcctttttcaAACCTTGAAGTCTTTTTG
AGGGTTGGAAATAATCAGAAATAAATAGAATAGGgaacttttaacttttt
gccccttaTTAGATCAAAATGGTCAAATTATTCTCAATTAGGGTCGTAAA
ATCCATAACaaattttccttctttttagttcctctaagggtccgagggtc
gaaatcCTGCGGCACATACCCGCCAGCTATCCTCCTCCTCCGGAATAACA
TTTTGTGCAATTCTATTTGACTCATGAAAATGCATTTTTAATAACACGTT
TTTTTaactacttttatttttaaaaatattaattgcTTTTTTTTACTGAC
AGGTattattttcaatactttttatttttcatatttattttgCATAAATC
ACTTAATATAATCTTTGAATTATGTGAAG Coding sequence (CDS) from alignment at scaffold_179:400618..402296 >TCONS_00050589 ID=TCONS_00050589|Name=TCONS_00050589|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_179:400618..402296 (Clytia hemisphaerica)
ATGATTCGAATAAAACATAGAAGATGCTATCTGGTTTTAGTTTTATTGTT
AATATTGTTAGCATGGGTTCATTTCAAATTACTCCCATCAATTACTGACC
AGTATAATACAGACTGCTATCTCAGTGAACaatcgaaaaaagatcttgaa
aTTTTACTGAAAATCATTATATCATCATTTGAGAAAAATAAGGTTTTCTA
TTGGTTAGATTATGGCTCGTTGCTAGGTGCAGTTCGTTACCATGGTATTA
TCCCTTGGGATGGAGATGGGGATGTCTCTTTCCTTAAGGATGATCCTAAT
GTAAATGAGGCTTTACGTGATATAAATAACCGAGGAGTATCTGCTAACAC
CATGATAGCAACTTATGGATCCGCATCTGTTGACCTCGTGCGTTGGACTG
AGCATGAAAAAACGTACACCAAATATTACCCAAGCTGGGTCAAAGATGGT
CTAATAACCAAGATTAGTCATAAGTTAGAATATATCCCTAAAGAGTTTAT
TGGAAAACGAACTATCTTGGAATTTGTTGGTATTCAAGTTGCCGTGCCCG
AGAAATATATTGGCTTGTTGAAACGCAGGTATCGTTTGTCGTATTGGTTT
TCGGTACCGTTTAAATGGAAATGTTATGTACCATGTTTTATGAAAACTGA
CCAATCGTGTGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050589-exon-scaffold_179-1491911889:400618..402296 | TCONS_00050589-exon-scaffold_179-1491911889:400618..402296 | Clytia hemisphaerica | exon |
| TCONS_00050589-exon-scaffold_179-1510915933:400618..402296 | TCONS_00050589-exon-scaffold_179-1510915933:400618..402296 | Clytia hemisphaerica | exon |
| TCONS_00050589-exon-scaffold_179-1575043694:400618..402296 | TCONS_00050589-exon-scaffold_179-1575043694:400618..402296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:400618..402296 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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