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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050581 ID=TCONS_00050581|Name=TCONS_00050581|organism=Clytia hemisphaerica|type=transcript|length=831bp
AATGACTAAGACCAGATATATTGTGGCTAGTCTACTGATGGACTTgctga
agtttttcaaatcaATTGTATTGTTCTTTACGTGCTCTTTCATCAGGACA
ATAGCACGCCAATACAAAAGCACATCGCATAACACGAATGTATTGTCCAC
CGGTTGAATTCCGACCAACGCTATGGTCCAATTACCGGTAAAAATACCGG
ATATTAAAATCATGCAATTCAAAATTGCAAGAATTGCAATGATTATCAAA
CCAATGGTTTGTCGTTTGAAAGTCATGATTTCATTGTATCTGTTTGTGTA
TTTGACACGACAGTATCTGTCCAGTGCGACCATTCCAACGAAAAATCCAG
TCATGTGAGGAAAGATGTAGAGAATGTATTGCATAATGACTTGGGTAATA
CACGTTAGTTTCGAATGTGCTTCGAATAGAAAGATCGTCAACATATGCTG
GCTGATGAAACCGACTAAAAAGTCTGAGCAAGACATGTAAAGAGTCAACC
TAAGCGAACTGTTTTGATATTGTTTCGTTTTGTAGATAAGATACATGACC
ATAGAGTTGACAACAATGTTACTGATGGCGACCAGTATATTGGCGGCGAT
TAATACATTTATACTTGAATCACTCAAGAGGTGTATCTTATGAAAAAGTG
TCCTGCAAGCATCTTTGTTGTTTGAAGTAGTGTTGATTGTTGTCGTTTCG
TTGGAGAGTGAATAATTCATTCTGTAGTGGATACAGAGGTGTTGGTTGAT
TGAGATATCCCTATGGATAGTCGTCTTGTATCTTCTTTTTATGATTTACA
GGTGAAAATCTTTTCAACGACAATATTGAAA Run BLAST on NCBI protein sequence of TCONS_00050581-protein >TCONS_00050581-protein ID=TCONS_00050581-protein|Name=TCONS_00050581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MNYSLSNETTTINTTSNNKDACRTLFHKIHLLSDSSINVLIAANILVAIS
NIVVNSMVMYLIYKTKQYQNSSLRLTLYMSCSDFLVGFISQHMLTIFLFE
AHSKLTCITQVIMQYILYIFPHMTGFFVGMVALDRYCRVKYTNRYNEIMT
FKRQTIGLIIIAILAILNCMILISGIFTGNWTIALVGIQPVDNTFVLCDV
LLYWRAIVLMKEHVKNNTIDLKNFSKSISRLATIYLVLVI Run BLAST on NCBI transcript from alignment at scaffold_179:215327..216157 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050581 ID=TCONS_00050581|Name=TCONS_00050581|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at scaffold_179:215327..216157 (Clytia hemisphaerica)
TTTCAATATTGTCGTTGAAAAGATTTTCACCTGTAAATCATAAAAAGAAG
ATACAAGACGACTATCCATAGGGATATCTCAATCAACCAACACCTCTGTA
TCCACTACAGAATGAATTATTCACTCTCCAACGAAACGACAACAATCAAC
ACTACTTCAAACAACAAAGATGCTTGCAGGACACTTTTTCATAAGATACA
CCTCTTGAGTGATTCAAGTATAAATGTATTAATCGCCGCCAATATACTGG
TCGCCATCAGTAACATTGTTGTCAACTCTATGGTCATGTATCTTATCTAC
AAAACGAAACAATATCAAAACAGTTCGCTTAGGTTGACTCTTTACATGTC
TTGCTCAGACTTTTTAGTCGGTTTCATCAGCCAGCATATGTTGACGATCT
TTCTATTCGAAGCACATTCGAAACTAACGTGTATTACCCAAGTCATTATG
CAATACATTCTCTACATCTTTCCTCACATGACTGGATTTTTCGTTGGAAT
GGTCGCACTGGACAGATACTGTCGTGTCAAATACACAAACAGATACAATG
AAATCATGACTTTCAAACGACAAACCATTGGTTTGATAATCATTGCAATT
CTTGCAATTTTGAATTGCATGATTTTAATATCCGGTATTTTTACCGGTAA
TTGGACCATAGCGTTGGTCGGAATTCAACCGGTGGACAATACATTCGTGT
TATGCGATGTGCTTTTGTATTGGCGTGCTATTGTCCTGATGAAAGAGCAC
GTAAAGAACAATACAATtgatttgaaaaacttcagcAAGTCCATCAGTAG
ACTAGCCACAATATATCTGGTCTTAGTCATT Coding sequence (CDS) from alignment at scaffold_179:215327..216157 >TCONS_00050581 ID=TCONS_00050581|Name=TCONS_00050581|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_179:215327..216157 (Clytia hemisphaerica)
ATGAATTATTCACTCTCCAACGAAACGACAACAATCAACACTACTTCAAA
CAACAAAGATGCTTGCAGGACACTTTTTCATAAGATACACCTCTTGAGTG
ATTCAAGTATAAATGTATTAATCGCCGCCAATATACTGGTCGCCATCAGT
AACATTGTTGTCAACTCTATGGTCATGTATCTTATCTACAAAACGAAACA
ATATCAAAACAGTTCGCTTAGGTTGACTCTTTACATGTCTTGCTCAGACT
TTTTAGTCGGTTTCATCAGCCAGCATATGTTGACGATCTTTCTATTCGAA
GCACATTCGAAACTAACGTGTATTACCCAAGTCATTATGCAATACATTCT
CTACATCTTTCCTCACATGACTGGATTTTTCGTTGGAATGGTCGCACTGG
ACAGATACTGTCGTGTCAAATACACAAACAGATACAATGAAATCATGACT
TTCAAACGACAAACCATTGGTTTGATAATCATTGCAATTCTTGCAATTTT
GAATTGCATGATTTTAATATCCGGTATTTTTACCGGTAATTGGACCATAG
CGTTGGTCGGAATTCAACCGGTGGACAATACATTCGTGTTATGCGATGTG
CTTTTGTATTGGCGTGCTATTGTCCTGATGAAAGAGCACGTAAAGAACAA
TACAATtgatttgaaaaacttcagcAAGTCCATCAGTAGACTAGCCACAA
TATATCTGGTCTTAGTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050581-exon-scaffold_179-1491911889:215327..216157 | TCONS_00050581-exon-scaffold_179-1491911889:215327..216157 | Clytia hemisphaerica | exon |
| TCONS_00050581-exon-scaffold_179-1510915933:215327..216157 | TCONS_00050581-exon-scaffold_179-1510915933:215327..216157 | Clytia hemisphaerica | exon |
| TCONS_00050581-exon-scaffold_179-1575043694:215327..216157 | TCONS_00050581-exon-scaffold_179-1575043694:215327..216157 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:215327..216157 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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