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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050575 ID=TCONS_00050575|Name=TCONS_00050575|organism=Clytia hemisphaerica|type=transcript|length=1141bp
NNAAGAAGAAACAGATCCAAACAAATGCACAAAAGATGGTAAAAGGAGAA
GAACTTGATTTTGGATTTTAAATTCCTTGAGAcattaatattaaaaaaac
atgaatCAATAAAGCTATTTTTCTAGAAGTTATCCTAAGAATTTACGAAT
GTGTTTAAATATCTTATTACTTTACGTTAATTTTTGGTTTTAatgttaaa
atatattttatttgatatcagcaatacagttgactctctcgaAATCGATC
TTCACAATAACCTAAAAGCCTTTGCTGGATTATAAGAATCGAATGCGTCT
ATGAGACTTTTGAAATAACTCCAAGTTATAAATTTCAAGTTAACCGAACT
GCCATACTGTAGAGTTTCAAATTGCTgcttaattttcttataaaattgat
tTAGGCGATACGATTAGGATTTTTAAAGTTCGACTGTTTAAcacagcaaa
ttttcaaaacccttttgtgaaaatttaaattaatttctcACGATATGTCA
AATCCCTCTCGACACCTGATTGTTCATTGTAGGAGTAATTGATTTGGTTC
TAcctcaatttttttcttatataagcATTATCTAATTTGCCTAATAATTT
GTTTAGATGTAATAGCTTTTAATATCCTTTATCCAATATCTCagtattat
aatattttttttattctacGGCTGCATAATTTTCAAATTACATAGAAGGA
GGCATTTTCAAGGTTAAAATTGGTCTAACGTGCACATAAGATACCTCAAA
ATATTCGTAAGACGAAATGAcatataaaaatgttttacttgtaagacatg
ataggATCATAGTACTTGAATTATGGAACacttaaattaacaaaaagaaa
CTGAAGTGAAAGAATAATTCTGAGTAACTTCAGAAACTCCCAATTCGAGT
TGTATGATTTACAAAAGGGCGACACAAATGTTTTTTTAGGAGTGTGcttt
gttctcattttttttgtaTATGAAATCTTAATTTGTATCTTATGTTAAAG
TATATtttaggaaaagaaaaacaatttgtttgtttttggttttaaTCTAG
TCACACAGTAGACActcactaattcgaacttccattattagaaactttct
ataattcgaacaaaatctTGGTCACCATCAATTTTCAGAAG Run BLAST on NCBI transcript from alignment at scaffold_179:125056..126196 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050575 ID=TCONS_00050575|Name=TCONS_00050575|organism=Clytia hemisphaerica|type=transcript|length=1141bp|location=Sequence derived from alignment at scaffold_179:125056..126196 (Clytia hemisphaerica)
CTTCTGAAAATTGATGGTGACCAagattttgttcgaattatagaaagttt
ctaataatggaagttcgaattagtgagTGTCTACTGTGTGACTAGAttaa
aaccaaaaacaaacaaattgtttttcttttcctaaaATATACTTTAACAT
AAGATACAAATTAAGATTTCATAtacaaaaaaaatgagaacaaagCACAC
TCCTAAAAAAACATTTGTGTCGCCCTTTTGTAAATCATACAACTCGAATT
GGGAGTTTCTGAAGTTACTCAGAATTATTCTTTCACTTCAGtttcttttt
gttaatttaagtGTTCCATAATTCAAGTACTATGATcctatcatgtctta
caagtaaaacatttttatatgTCATTTCGTCTTACGAATATTTTGAGGTA
TCTTATGTGCACGTTAGACCAATTTTAACCTTGAAAATGCCTCCTTCTAT
GTAATTTGAAAATTATGCAGCCgtagaataaaaaaaatattataatactG
AGATATTGGATAAAGGATATTAAAAGCTATTACATCTAAACAAATTATTA
GGCAAATTAGATAATgcttatataagaaaaaaattgaggTAGAACCAAAT
CAATTACTCCTACAATGAACAATCAGGTGTCGAGAGGGATTTGACATATC
GTgagaaattaatttaaattttcacaaaagggttttgaaaatttgctgtg
TTAAACAGTCGAACTTTAAAAATCCTAATCGTATCGCCTAaatcaatttt
ataagaaaattaagcAGCAATTTGAAACTCTACAGTATGGCAGTTCGGTT
AACTTGAAATTTATAACTTGGAGTTATTTCAAAAGTCTCATAGACGCATT
CGATTCTTATAATCCAGCAAAGGCTTTTAGGTTATTGTGAAGATCGATTt
cgagagagtcaactgtattgctgatatcaaataaaatatattttaacatT
AAAACCAAAAATTAACGTAAAGTAATAAGATATTTAAACACATTCGTAAA
TTCTTAGGATAACTTCTAGAAAAATAGCTTTATTGattcatgttttttta
atattaatgTCTCAAGGAATTTAAAATCCAAAATCAAGTTCTTCTCCTTT
TACCATCTTTTGTGCATTTGTTTGGATCTGTTTCTTCTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050575-exon-scaffold_179-1491911889:125056..126196 | TCONS_00050575-exon-scaffold_179-1491911889:125056..126196 | Clytia hemisphaerica | exon |
| TCONS_00050575-exon-scaffold_179-1510915933:125056..126196 | TCONS_00050575-exon-scaffold_179-1510915933:125056..126196 | Clytia hemisphaerica | exon |
| TCONS_00050575-exon-scaffold_179-1575043694:125056..126196 | TCONS_00050575-exon-scaffold_179-1575043694:125056..126196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:125056..126196 . |
Blast
The following BLAST results are available for this feature:
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