TCONS_00050570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050570
Unique NameTCONS_00050570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050570 ID=TCONS_00050570|Name=TCONS_00050570|organism=Clytia hemisphaerica|type=transcript|length=258bp
ggatattgaaaataaataacatGGATTCACTAATTAGACACCCGATTCGG
AAAGATTCGTTTCTGTATCTCTCCTATAGCCTAATTTGGGATTTTGTGAA
TCCCGAATGTTTTATAATCTAATTATTATATCTAACttttacaatgaaaa
aaatatacataTGTACAATgacgaaaaatgataaaaatgaagaaataact
TAGTAAATGCAATTACTAGAGTTTGAACTCGTGCAAAAttccaaaaacat
aaaaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_179:35382..35639

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050570 ID=TCONS_00050570|Name=TCONS_00050570|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at scaffold_179:35382..35639 (Clytia hemisphaerica)
ctttttttatgtttttggaaTTTTGCACGAGTTCAAACTCTAGTAATTGC
ATTTACTAagttatttcttcatttttatcatttttcgtcATTGTACAtat
gtatatttttttcattgtaaaaGTTAGATATAATAATTAGATTATAAAAC
ATTCGGGATTCACAAAATCCCAAATTAGGCTATAGGAGAGATACAGAAAC
GAATCTTTCCGAATCGGGTGTCTAATTAGTGAATCCatgttatttatttt
caatatcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032024XLOC_032024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050570-exon-scaffold_179-1491911889:35382..35639TCONS_00050570-exon-scaffold_179-1491911889:35382..35639Clytia hemisphaericaexon
TCONS_00050570-exon-scaffold_179-1510915933:35382..35639TCONS_00050570-exon-scaffold_179-1510915933:35382..35639Clytia hemisphaericaexon
TCONS_00050570-exon-scaffold_179-1575043694:35382..35639TCONS_00050570-exon-scaffold_179-1575043694:35382..35639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:35382..35639 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1655	0	0	0	12.7777	13.7032	7.363	9.09759	3.42191	4.23859	2.05704	3.60591	0.450112	0.821742	0	0	0	0.52075	0	0.355959	0	0.957521	0.775995	0.411216	0	0	0	0.60777	0.6179	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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