TCONS_00050541 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050541
Unique Name	TCONS_00050541
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1654

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_179:192606..196503-

transcript sequence

>TCONS_00050541 ID=TCONS_00050541|Name=TCONS_00050541|organism=Clytia hemisphaerica|type=transcript|length=1654bp
tagagagataaaaatataaattgaactAATTATAcaataaacaaataaat
aaaacaaaaagaaaagatggCTACCAAACTTTTGGAAAACAACTCAAGAC
CAATCTTATTTCATTTTGAGCATGGACAATTGAAAGAAGAGGCTAAAGTA
ACAACATCCTTCAAATACATGAAATCGATGACTCCAAACTCAAATGAAAG
AATCGTGACCGCGCAAACTGGTAAATTGGACTACAGTGGGAAGATTCTAC
AAAAACAACAGTCTTTTGTCAAATATTACATAGGGTTGGTGGATAAGAGA
AGCAAAAAGATTGAGCATGTCGAGCAATGCCTCCATTGTACTTTGAGACC
CAAAATTGATGtggagaaaaagaaagaagatgaCGAAAAACAAATCACTT
ACAGAGATAAGATGGATAATCTGGTAGAAGCGTTTGGTACGGCCAAACAG
AAACGTTTGTTGACTCAACGAAAGAAAAACGAGGCTGTTCACGGTACTAT
GTCAGATAAAGTACAAAAAATCGCTGAGGACGTTCTAGAAAAGAAACCTG
CCGTCACGCCCAAACCTGCTCAGACGCCCAACGCCATCGAAGAAGAGATT
TTGCCGAGTCGTAACGCGGATGCGACGGACGTGAAACAGTATTACAATAT
TGACGACATCATTTCGTATCGGACGTACCAAAAAGTTCATTCTCACGCCA
AAGAAGTTTTCAACTATAATTCACAAGATTTGCTGAACTGGAGGAAAGAG
AACAAataTTCAGAATTCATCTTGGATATGATAGAAAAGCTGCCTGTTAA
TTTACAAGAGAGAGAAAAGAAAGCAACGTACCTATTCTATCTCAATTATA
TGATCAAGTTTTCAAACATGTCATTCAGAGCAATTTCACGAAAAgAATTT
CCAGAGGACATACCAGAAGAAGTTCATGATATTTTACTGGATCAATTCAC
AAGACAGTCTGAAGCTATCGGTGGTCGAATTCAAAGATACCTACCGAAGA
AATGCAAGGACCAACTGATCTGCTGGATCTTGATTCTGGCTTTAGTGTTA
TCTGACTACGAATTGAAATGCACTCTTCTCCTCAAAGAAATCAAGTATGC
TCAAACAAGATTGGTGAAGATGCTTCGTTTCATCGGCTGTTCCGTCAACT
CCAACAAAAATCGTAAACGAAAAGCGGACGGTGACGAACCAGAAGCTCCA
CATGTTATCGAATACATCGCCACGCTCAGACTTCCGAAGAAAGAAAATCA
AGATAATGCGGATACACCAAAAACAAAGAagacaaaaactgaaaaaacgG
CAAAGACACCCAAAACTCCGAAAACACCAAAGACTCCGAAAACAGGTGCT
AAGAAAACAGCGATGGAAGGAACACCTCAATCGAAAAAAGTCACAAACAA
AGAAACAAACGGCGCCACACCACCACCCATCATTCCTACAAAGAAGATCA
AAACAGAACATTCCAACGACACTGATGCATCCTTTTTGTAGTAGTTTTTT
TAGGGTAAAAATCGTTTacattgagaaaaaaaactttaaaatttaaatta
ctTTATCTTTATCGGGAATTTTAGTCTGGGAAAGATTAACTTTTGATATT
CATGACTTGTCTCTTATACGGAAACACACGAAAAACACCGGGTGTTTACC
ACCA

Run BLAST on NCBI

transcript from alignment at scaffold_179:192606..196503-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050541 ID=TCONS_00050541|Name=TCONS_00050541|organism=Clytia hemisphaerica|type=transcript|length=3898bp|location=Sequence derived from alignment at scaffold_179:192606..196503- (Clytia hemisphaerica)
TAGAGAGATAAAAATATAAATTGAACTAATTATACAATAAACAAATAAAT
AAAACAAAAAGAAAAGATGGCTACCAAACTTTTGGAAAACAACTCAAGAC
CAATCTTATGTGAGTATTATAAAAACAAGAATATTTTAGAGAGCAATGAA
ATCAAAATGAATTATGGATTGATACTTTGCATGTCATACTGTTTGTTTTG
TTTTGTCATATTAGCTGTATTACTCATTAATGAATTTCGTTTTGTTTGTA
GTTCATTTTGAGCATGGACAATTGAAAGAAGAGGCTAAAGTAACAACATC
CTTCAAATACATGAAATCGATGACTCCAAACTCAAATGAAAGAATCGTGG
TATGGTTTCTTGACTTCGATATCAAAACTGTATTTTCTGCTTTTGAATAT
TCTATAGTCCACACAATCACATGTAGTTTCTCCAAGGATCGATCTAGTAT
AACCACTATAATTTTTAAGTCTTTATCACCGACTTCATATTATTCTTTAG
ACCGCGCAAACTGGTAAATTGGACTACAGTGGGAAGATTCTACAAAAACA
ACAGTCTTTTGTCAAGTATGCTTTCTCATTTTTTTGTTACTTTGTAATTT
TATTCATTCGCAATCAAAGAGACAGGGGTTTGTATTTTCCTGCAATGTAC
AATGTATTTTTGAACTCCAGCCCGGCAGGGCCTTCTAAAGGTCCGGCAAA
AGTCTGAAAAGAATCCGGAAAAATCAGGCTGCGACTCAACGTAATAAAAT
ATTTATTGTTCTGATTAGTAACATATTTTGAATATGTGTTTTTTCTAGAT
ATTACATAGGGTTGGTGGATAAGAGAAGCAAAAAGATTGAGCATGTCGAG
CAATGCCTCCATTGTACTTTGAGGCCCAAAATTGATGGTGAGTTTATTTT
AGATACTGGTTGAAGTGCGCATTTGTACCCNACAATGCCTCCATTGTACT
TTGAGACCCAAAATTGATGGTAAGTTTATTTTAAATATTGATTGCTCATA
ATTAGTAATTAGTATCTATTCTATTTTTATCCATTTCCGGGCTAAGAGTC
TTATCTTCTTAACTATTAAGTTTCAATTTAATTTTCAGTGGAGAAAAAGA
AAGAAGATGACGAAAAACAAATCACTTACAGAGATAAGGTAACGAGTTTT
TAGCTTTGTTTGATCATTTTGGAACTCATTGAGGTTTCACTTCACATTTT
TAAAACTTCAAATACTCGGATGGTGAACCCAACTTCAGTCCTAAAACGTG
CAATCAAGTTTGCTAGGTCTTAATTTATTTTATCTCCTTTAATCAGATGG
ATAATCTGGTAGAAGCGTTTGGTACGGCCAAACAGAAACGTTTGTTGACT
CAACGAAAGAAAAACGAGGCTGTTCACGGTACTATGTCAGATAAAGTACA
AAAAATCGCTGAGGACGTTCTAGAAAAGAAACCTGCCGTCACGCCCAAAC
CTGCTCAGACGCCCAACGCCATCGAAGAAGAGATTTTGCCGAGTCGTAAC
GCGGATGCGACGGACGTGAAACAGTATTACAATATTGACGACATCATTTC
GTATCGGACGTACCAAAAAGTTCATTCTCACGCCAAAGAAGTTTTCAACT
ATAATTCACAAGATTTGCTGAACTGGAGGAAAGAGAACAAGTATGATTAG
TTTGGATTTTCATTTCGAGATTTTGGGAAATGTGTCGAGTCTGTTAGAGT
CACTTTGCATGTATGCAATAAATATATAAATTTTGGAAATTTTCTTTTTA
GATATTCAGAATTCATCTTGGATATGATAGAAAAGCTGCCTGTTAATTTA
CAAGAGAGAGAAAAGAAAGCAACGTACCTATTCTATCTCAATTATATGAT
CAAGTTTTCAAACATGTCATTCAGAGCAATTTCACGAAAAGGTAAATTTT
TTCTTGATCCGAAGATTATTTTGTATTTTAATAATCTTTTGACTGTATCA
GTAATACACTTTGTTATGTCACCTTTTAAGCATATTTAAGCTTAAATTTG
AGTTATTTTAAACATATGTTGAAACATACCTCCAAACTAGAATGCTAGAT
ATTTTTAACAAATTTCTTAGTGCCTACACCACTCAATAATCGTTTCGTGA
TCTGTTCTTTTGCAGAATTTCCAGAGGACATACCAGAAGAAGTTCATGAT
ATTTTACTGGATCAATTCACAAGACAGTCTGAAGCTATCGGTGGTCGAAT
TCAAAGGTACTTACAATCTCTTTGGTACTTACAGTCTCTTTTTCTGGAAG
TAAACTAGAATATCTTGTACCAAAGAAACGATTGTAGTCGCCATCAATCT
GCATTAAAAATCAACAAACCAGCCGAAGATTTACTCAGTTTCAGCCTAGT
GTACCGGGTAGTCCAAAAAAAGTGTCCATAAAATTCATTTTTTGACGTAG
CTTGTTTTTGTGGGTCTATTGACTTGAAATTTGGNTTAACCCTTTCTGGA
CGCACGGGCCACTGGGTGGTCCATACTAGTGACCATACTTCAAACAAGAA
TTTTCTCGAGAGCTAAGCCTTCCCGAGAGCTCGTTCAGCTACCGTTAGAA
AGAGCAGGAAATTTGGAGTAAGATATGTCTATTTGAGGCGCCCGACCCAC
TAAAACATATTTTGAATTTTTTTTCAAAAAGTGCATTTCTCTTTCGTCCG
GAAAGGTTTAATATTTATCTGAAAAGACTATAACGAACTCTGCTTTTACA
GGAAGTTACAAATCTATTTCTGCGAACTAACTGAAGTCATTTTTAAATTA
GCTGTCAGTAAAATTACAAAAGCTTTTTTGACAACCATATATATATCAGG
CCCAAAAATTCCGGGTAACTGCTGAAAACCCTGCTACAAGAAAGTGAAAT
TCTTGTGATTCCAAAATGATTTTTCATTTGTTCATAGATACCTACCGAAG
AAATGCAAGGACCAACTGATCTGCTGGATCTTGATTCTGGCTTTAGTGTT
ATCTGACTACGAATTGAAATGCACTCTTCTCCTCAAAGAAATCAAGTATG
CTCAAACAAGGTAAAGTTTTCTATCGCTAAGAATCAGAAATGGAAACGGG
AAATTAAGGGAATTGTATTTAAATAATTAGACCTGATAACTTTTGTGTAC
TTAGGAATTTATTTTTCAAGAAAATATCTATGAATCACGTCTTTCCATTT
TGTTTGTTGTTGTTCTTTGATTTGTGTAATTAATTATAAAAGTAATTAAT
TATAAAAGTAATTAATAATTAATATATTATAAAAGTGCTTTCCTCTTCCC
CTGTATTTCGCGTAACAATCTCATTAAATCCTCATAAAAACCATGAAGTA
TTAAAAGGTGTACCAAAAAACTAAAGAACTAAGAATCTTCTTCCCTCCCT
CAGATTGGTGAAGATGCTTCGTTTCATCGGCTGTTCCGTCAACTCCAACA
AAAATCGTAAACGAAAAGCGGACGGTGACGAACCAGAAGCTCCACATGTT
ATCGAATACATCGCCACGCTCAGACTTCCGAAGAAAGAAAATCAAGATAA
TGCGGATACACCAAAAACAAAGAAGACAAAAACTGAAAAAACGGCAAAGA
CACCCAAAACTCCGAAAACACCAAAGACTCCGAAAACAGGTGCTAAGAAA
ACAGCGATGGAAGGAACACCTCAATCGAAAAAAGTCACAAACAAAGAAAC
AAACGGCGCCACACCACCACCCATCATTCCTACAAAGAAGATCAAAACAG
AACATTCCAACGACACTGATGCATCCTTTTTGTAGTAGTTTTTTTAGGGT
AAAAATCGTTTACATTGAGAAAAAAAACTTTAAAATTTAAATTACTTTAT
CTTTATCGGGAATTTTAGTCTGGGAAAGATTAACTTTTGATATTCATGAC
TTGTCTCTTATACGGAAACACACGAAAAACACCGGGTGTTTACCACCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032010	XLOC_032010	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_179	supercontig	scaffold_179:192606..196503 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.467529	0.247747	0.148781	0.0544612	5.09114	5.21144	10.9374	11.23	7.8762	8.26111	6.47184	3.72667	2.16486	4.04268	3.20669	4.7431	1.17365	2.43917	1.35726	0.699544	4.39984	4.47836	19.3932	15.341	12.2978	10.9346	0.131466	0.173433	13.6614	19.0662

Blast

[Close]

BLAST of TCONS_00050541 vs. Swiss-Prot (Human)
Match: RPA49 (DNA-directed RNA polymerase I subunit RPA49 OS=Homo sapiens GN=POLR1E PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.280e-34
Identity = 102/396 (25.76%), Postives = 205/396 (51.77%), Query Frame = 1

Query:  112 HFEHGQLKEEAKVT-TSFKYMKSMTPNS-NERIVTAQTGKLDYSGKILQ----KQQSFVKYYIGLVDKRSKKIEHVEQCLHCTLRPXXXXXXXXXXXXXQI---TYRDKMDNLVEAFGTAKQKRLLTQRKKNEAVHGTMSDKVQKIAEDVLEKKPAVTPKPAQTPNAIEEEI------LPSRNADATDVKQYYNIDDIISYRTYQKVHSHAKEVFNYNSQDLLNWRKENKYSEFILDMIEKLPVNLQEREKKATYLFYLNYMIKFSNMSFRAISRKE-FPEDIPEEVHDILLDQFTRQSEAIGGRIQRYLPKKCKDQLICWILILALVLSDYELKCTLLLKEIKYAQTRLVKMLRFIGCSVNSNKNRKRKADGDEPEAPHVIEYIATLRLPKKENQ 1251
             F +G+L+    +  T ++   S  P   N+RI+ A+T +L Y G        K  +  ++++G+++K S ++E  +  L   ++P       + +   +    TYR+KMD+ +EAFGT KQKR L  R+ N   + +++  V K AE +++ K  VT   A   +AI  ++      LP    DA   +  Y  +D++S   Y+ + S ++   N  S+++L   +EN +  F+++ ++ LP +++ R+++A  +++L+ +IKF   + R + RK      +P  ++  LL  FT  +    GR++  +    K ++  +++ILAL + D+++  T+L +++K ++ R++++ + +   +  +K R   A G E +       + TL LP    Q
Sbjct:   89 QFSNGKLQSPGNMRFTLYENKDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDAELF-NMQPLFSDVSVESELALESQTKTYREKMDSCIEAFGTTKQKRALNTRRMNRVGNESLNRAVAKAAETIIDTK-GVT---ALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTSEEILKMIEENSHCTFVIEALKSLPSDVESRDRQARCIWFLDTLIKFR--AHRVVKRKSALGPGVPHIINTKLLKHFTCLTYN-NGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLKI--SKRRVSVAAGSEED-----HKLGTLSLPLPPAQ 469

The following BLAST results are available for this feature:

BLAST of TCONS_00050541 vs. Swiss-Prot (Human)

BLAST of TCONS_00050541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPA49	7.280e-34	25.76	DNA-directed RNA polymerase I subunit RPA49 OS=Hom...	[more]

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TCONS_00050541 (transcript) - C. hemisphaerica