TCONS_00050538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050538
Unique NameTCONS_00050538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050538 ID=TCONS_00050538|Name=TCONS_00050538|organism=Clytia hemisphaerica|type=transcript|length=3094bp
ttcagaaaaagtaaacaaattaTTGGTATTGATTGCAGTAGTAATGGATA
GTAGAGATCGTGAGTTCTTGCGTTCAAATCGCAGAGAAATATGTCTTATA
GACTTTGATGCACCCAATGTTGCTTCAAAACTTCATGAACTTGGTATCCT
ATCGAAAAATGAGAATGAAATGATTTCATTAGAGGAAAAAGACTTGAGAC
AAAAGGAGAGACTGTTGGATATTTTACCAAGAAGGGGACCAAAAGCTTTT
GCAAAATTCATTGAAACTGCAAAAGAATTAAGAATATTGAAATTATATAA
GATACTTGGTGGGGATCCAGCATTGTATGGTGATGGGGAAAGCAAAGTGT
CTTCAGAAGAGACAGacaaaacaaaaatggaagaTGATAGAACTGATGGT
CCACCAAGACAATTACCTTTGAAAGAACAAAACCCTGATGATGAAAAACC
AACAGAAGACACGGTTGATACTCCACCTGAAACGGAGACAGACGGCCGAC
CAAGTTTGTTCGGTGGTAGTGGTAAAAAGAAGACCAAAACTTCGTCCACC
TCTGAAGGGGATGAACGTGTTCCTCTGTCACCTTCAAGCTTTATAGAAGC
TCCTATTGACCTGAAGGAATGCTACGCCATGCAGTCAACACCGCGCGGTC
ATTTCATTTTGGTCAACAACAAACACTTTTTGCCGTCTTCAGGTATGGAA
AACTATCCACGTAACGGAACGGATGTAGATGGTGCTGCTATTACGGAACT
CTTCCAAGAGATGGGATTCCTCGTAGAAGCTCACAGTAATCTCTCCGTCT
ACGAAATGCGGAAAGTTTTCAAACAGGCCGCACACAAAGACTATTCCGGA
GTATCGTGTCTAACTTGTTGTATACTAAGTCACGGACAAGAAGGTGTGAT
TTACGGTACAGATGGTACGATTGAGATTCGTGAGATTACGTCATTCTTCC
ACGGAACGAATTTATCAGGAAAACCGAAATTGTTCTTTTTCCAGGCGTGT
CAAGGCTCAGATTATATGGATTCAGTTACACCAGACGAGGTAATGGAGAC
AGACGGGCCAGCGAGTGAAGGGAATGATATAACACTACCATCAGAAGCAG
ATTTCTTATACGCCTATTCAACGGTACCTGGATATTATTCGTGGCGAAAT
TCTCAAAGAGGATCTTGGTTTATTCAATCCATTTGTGAAGTGTTCCGTAA
GCATGCGCATAAAATGGACGTGGTACGTATGCTAACACGTGTCAACGCAA
TCGTCTCTACGAAGAAATCACAAACGGGACAACGTGCTTCACACCACAAG
CGTCAAATCTCATCTATAGTTACGCAGTTACGTAAAGAACTTTATTTCTT
CCCNGTCAAATCTCATCTATAGTTACACAGTTACGTAAAGAACTTTATTT
CTTCCCTATGCACGGGCCGTTGGCTACATATCAAGGgaattattaatttt
ttggttGGTTTGTTAAGGGCCATTGATGCACTGATGACTGATTTAGACAC
TAAATGGAGTTACTCTATTGCTTCCAGGATCTTGACCTTAAAGCAAAATA
ATGAGCCATCTTAGACCATAAAATAACCTATTTTCTTATTGCTGGCACTA
CAACGGCATTAAAATATAAAGGCATCTCATGAGCAAAAACGTGGCTTACT
TAAGTTGACACAAAATTTCACAACACCAGAGAGAAGCGCCATCTAGTGTT
TAATGAAAGGAATCTGTGTGTTTAAGGCCTCGTTACATTTCCTGAAAAAT
AGTAAGTACTCAAACTTTAGGGTCCGTATAGactgtttatttttttcttc
ttacttcatttcaaaaatgataCTGTACTTTTTTGTGTGTGCGCGGTGTA
CGATTTTGGTTCAAAGTTCTGCATTTTCAACATTTAATATAATTTAGTTT
AATTTAGTAATAATTTAGTTAATTTAgtatttttccatatttttttctat
tcaCCTTTGATTGGTATTTGTTTATACTCGTTTCGGTTTATTGCCGGAAA
AAGTATCAATTCATATTGTTTCTTACCGCGTGGCATTTTACCAAGAATTG
CTTTACTGCTGGCATCCAATATAAGGGTTTTTGTTGTATTATGTGGTTTA
GTACAGACCTGTAATTCATTCTAAGAATTAAAAGCATTGATTTTTCTTTG
CGTTTTCTACGAAACTCTTCTGGACAGTATTCTTTATCTCGGTAAAGGCT
TTTTatgaccaattttttaaatccaaaTTTATTAAACTTTATTTTATTAT
ATGATACCAGATTAATTTTCTATGTCTTTCATTATGCTTTGCTCGTTTCG
CCAGGTTTGCTGATAAGATGCCGAATTTAGGGTTTTGAATCTAAAGATAT
TGTTGGTCTCTTACCTAATTTTAAATTGTGACTACGAATTCTACAGATAA
AAGTCTTCTTGACGATTTCTCGAGTAATCGTTTCTCTCAAAGTCTAATCG
CTTTAAATGTGGACTCTTCTTTGCTTCCACGTGGAAACTAAGTCAGTGTA
ATTAAACTGACTCCCTTGAGAGTGTTTTTGGAGGATATAATAGAGGAAAA
TAACAGGCTGGAAAGCAAACACGACTTCGCTTAGAAAACTAGATGAAAGT
ATAGTTTTTGGACTCTACCAGGTTTGAGGAGTAATCTTCGGttgttattt
ttcataatttcagtTTATATGATAATAATTTATATAGATActgtataaaa
atatttacGCCTACCAACCTTTTTGTCACAAGAGGATCAGAGAAAAGTTT
ACCAGGTTCGGATAatgttttttggtgtttttcctttaaaaaagttattt
gctttgtttttgctAAGCTGCCGAATTCTTATTTAGTAAgctcaatgttt
tgattatttcatCAGCCGTTAAATCGTTGCAAATCTCTCCCTAACTTGGG
TCTTAGCTCGATGTTTGTTTGGCAAAAATTGACTCGTGCCTAAGCTcgga
tccaatccttttttaaggGTTGATAGGCGTATTCATTTCCCATCTTCATT
CATCATTAATATTAGTACGAACCTTTAGTAAaaattattgtattttttat
aaaattctaTACATTAAAAAGATAGATATTACGTTGATTTTGAA
Run BLAST on NCBI

protein sequence of TCONS_00050538-protein

>TCONS_00050538-protein ID=TCONS_00050538-protein|Name=TCONS_00050538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
SEKVNKLLVLIAVVMDSRDREFLRSNRREICLIDFDAPNVASKLHELGIL
SKNENEMISLEEKDLRQKERLLDILPRRGPKAFAKFIETAKELRILKLYK
ILGGDPALYGDGESKVSSEETDKTKMEDDRTDGPPRQLPLKEQNPDDEKP
TEDTVDTPPETETDGRPSLFGGSGKKKTKTSSTSEGDERVPLSPSSFIEA
PIDLKECYAMQSTPRGHFILVNNKHFLPSSGMENYPRNGTDVDGAAITEL
FQEMGFLVEAHSNLSVYEMRKVFKQAAHKDYSGVSCLTCCILSHGQEGVI
YGTDGTIEIREITSFFHGTNLSGKPKLFFFQACQGSDYMDSVTPDEVMET
DGPASEGNDITLPSEADFLYAYSTVPGYYSWRNSQRGSWFIQSICEVFRK
HAHKMDVVRMLTRVNAIVSTKKSQTGQRASHHKRQISSIVTQLRKELYFF
XVKSHL
Run BLAST on NCBI

transcript from alignment at scaffold_179:100249..108531-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050538 ID=TCONS_00050538|Name=TCONS_00050538|organism=Clytia hemisphaerica|type=transcript|length=8283bp|location=Sequence derived from alignment at scaffold_179:100249..108531- (Clytia hemisphaerica)
TTCAGAAAAAGTAAACAAATTATTGGTATTGATTGCAGTAGTAATGGATA
GTAGAGATCGTGAGTTCTTGCGTTCAAATCGCAGAGAAATATGTCTTATA
GACTTTGATGCACCCAATGTTGCTTCAAAACTTCATGAACTTGGTATCCT
ATCGAAAAATGAGAATGAAATGATTTCATTAGAGGAAAAAGACTTGAGAC
AAAAGGAGAGACTGTTGGATATTTTACCAAGAAGGGGACCAAAAGCTTTT
GCAAAATTCATTGAAACTGCAAAAGAATTAAGAATATTGAAATTATATAA
GATACTTGGTGGGGATCCAGCATTGTATGGTGATGGGGAAAGCAAAGTGT
CTTCAGAAGAGACAGGTAGGCTTCTTGATATCTTGTTGATTCATCATTAC
CATAGAATACTCGATTAGGGGCTGTATGTTTTAGAAAATTCTGGGTGTTG
AATGTTGTGATAGAGCTGGAGGCAGAGCTAATAGGTTACAAATATTTAAA
ATTATGTTAAAATCTAAGTTGGGGAGAAGGTTTGGACCCCTCTTAAAAAA
ATTTTGCCAGCAGGGCAATAAAATTGAGAATTTACATGCAGAGTTTCTTC
GACATTTTGCTTTGTGAAGGTGGGAGCTACGTTTTTCAAATTTCTTTAGC
CCCCCCCCCTGAAAAAGCTTTGGGCTGGACCCCTCAGCATTCTATGATTA
CTCTTTTTCGATATATATTATTTTGTATCATCTTTTATATTTCTTTCGTT
TACTTTTCCTGTTCACTTTAAAGGATGTTTCTGTAATAAAGGATCTAAAA
ATTAGCACAATAGTCTCAGGAGGAAAATTACATAAAAAGTACATTTCTTT
TTGTCTAAATAATTCTATAATTGGCCTTTTAGACCTACTTAGAGGACCTT
TTCGGTTGTTTTCTTGATTTAATAATTTGTATCAAATCAAAGGGAACATT
TTTTAATACAGTTGATATTTTTTCTTCATTTTTGTGAAGAAAATATTTGT
CTATACTTTCAGAAAAAGGTCTAAGGTAGCTCAGCATGAGATCACTTCCT
GATGTTCATGATAGAATTCTTGATATTTTTGCTTCATTATACAAAATGAA
AGAAAAAAGTTTCTCTACTGTGTATTCGATCATCATTCTCATGTGTTTTG
TGTTACAAAATTTTATATTTTGAGATAATAGTTTTTTTGGTTGGTTAGTA
AGCATCGGTTATATAAAATTGATATATCATGTTTTTCATTCTGGTTCAAA
GTCTTTTGTCAAGATTCTATTGTTCAGGTAATATTCTTTTTTTGTGTTGT
GAAAGTAGTTTTTTGTATGGTTTATTTTTGTAAAAAGGTGCAAGTAGTAT
TTGTACAGGTTCGAGAGGATTTGAGTATGTGACAAAGTCACCCTGAAATC
TCGTGAAATAAAAAAAGAATTAGTTTTGTCTTAAATAATGGGTACAAATT
CTCAATCATAAAGTCCTCTAAACCAGTTTTGGCAAAACATTGAATGGGGT
ACATAATAATTGAGTAACAATCCAGATTTTAAAGATCTGATATACATTTC
AGGAGATTTTCAAAGTAAAATAATGTACTGACTTGTTGTGATTTGTTGAA
ATTTGAGACTTCTTTTAATGACAAATGCTTAACCTTTCTTACTCTTATGG
AAACAAACATTATTGAAATACTTTTTGAATAACATAACACTTTTATTAAA
GTAAACGTCACCTTTCAAAGTAACATACTTAAGCTTGAAAAAAATTTTCT
TTTAAAATATTGATGCTCTGGCATGTTTTCTGCTGTCTAATGCTTGAAAG
CTTGAAAGGGAATTTTCAAATTCGAATTCATGGAAATTACTTTTTTGTGC
TTTAGTATATTGATAGTATGGTGCTGCTTAATCTTTTCAGTCAAAAAGTT
TTAATAGAAACATTTTCAATGATTTAAATTGATTCTAACAAATTATTTTG
CAATATATTTTGATTTTGTCTTAGTTTCTCAAACTTCTAGTTTTCAGATT
GTGATGAAATAATTTCGAAAAAAATTTCGGCTTCTCCAGAAAATGGGTTT
AGCAAGACTCTTTCTGCTCCAAGGAGGGAGACTCCGAATTCCATTGAAGT
AAAAAGGGAAGTCCCAATGGATTACCCCTGGAATCGCCTGGTATTCAGGC
GTTAAATTATTTTAGTTAGAATTTCCAAAGGGGAAGTGACAACTGAGGTG
ACAATGTTATAAAATCTAAAATTCTTTGAATTTCAAAAACATGGAAAAAC
TNCGTGACAATAATGTTATAAAATCTAAAATTCTTTGAATTTCAAAAACA
TAGAAAAACTCATCATTATTGCGCAGTTTTGAATTAATGCTTACTTTCGG
ATGTTATTTTGATTTGAAAATTCTACGAAGCTTTCAGTCAGACTAAATTA
AAAAAGTACTTAACATTCTTAAAAACTTACCAAATTAAGATAAGATCTCA
TAAAAGGTCTTATAAAAGTCTCAACCTTTCGTATGTTTTTTTGTATTTGA
AAATCGTACTGCGTTTTGAAATAAAGATGGTTACCTCAAGTAAGTAAACC
ACTGTTTAAATAATGAATTAAATTTTAAGGTTTAGCTTCTTTGATGTCAA
TAAACATTTCAAAGTACGATCATTGACATTGAACACATTGGAATTTTGTT
TAAAAAATTTTCGCAGATAAGGTTTTTTCCAATTTCCATTGCCGCTAAAC
TCATGAATTTTGTCTCAGTCTTGGGTTGAGCTTTAGAAGCTACCGGGATA
TCTACTAACTTTTGGTGCAAATGGTTGGCGTTTTTTGAATCTGCGTAAAA
TGCCTATTTGTATCTGATTTATTCTAAAAATATACCCAGAAAAACTTAAT
ATTTTCCTTTTGGGTCATTTTTTGCGCCGATGCTAGTCTCTCACTATCTG
ACTATAACTAATCAAAGAAATTTCGAAGTCCAACAGAAAGTTTCAACCAA
GTTTCCTTTGAGTAGCCCGGTATAGCCAATATGCTGTATCACTTTATTGT
TGCCATCATTTTTAGATTCTCAGTGTTAAAAGAATAAATAGTACTCTACT
CTCGGGTACCTAATAGCCGGGGTGGTTGGAATAAAAATGTCCTGGGTGGA
AAATTTTCGAAAAATTTACTATTAGGTACCAGAGAGTAGTATTCCATAGC
TCACACACTGTCTTATATATCCGTTGATTTCATTCCAGACAAAACAAAAA
TGGAAGATGATAGAACTGATGGTCCACCAAGACAATTACCTTTGAAAGAA
CAAAACCCTGATGATGAAAAACCAACAGAAGACACGGTTGATACTCCACC
TGGTATGTGCAAAGATTGACCCGCCGGAAAAAAAATTAAGTGGCTGTTCA
AAACGTAGAGAGAAAGCGTGTGAGATAAAAATATAGATGTTGAAACCGTT
CTATGGAGCTTTTTCTTGTTTTGTTAAGTTACGTAATTTCCGCCATTATG
GAAGCAAACCTTCGATTTGTGCATCGAATCTTCCTATTCGAAGCATACGT
TCGATATGAAAAGTTTTGAACCTTTGCTTCCATAATAGCGAAAATATAAA
ACCAAACATGAAACACCTCCATAGCTTTAGAAGAAAACCGAAACGGGATA
CTTAAAATTTTTAGCTTTTTTCTTTCACAGACATACCTCACATTGAAAAA
AACATGTTTGACAGTAAGATTTTATTTATCTTTCTTTTCAGAAACGGAGA
CAGACGGCCGACCAAGTTTGTTCGGTGGTAGTGGTAAAAAGAAGACCAAA
ACTTCGTCCACCTCTGAAGGGGATGAACGTGTTCCTCTGTCACCTTCAAG
CTTTATAGAAGCTCCTATTGACCTGAAGGAATGCTACGCCATGCAGTCAA
CACCGCGCGGTCATTTCATTTTGGTCAACAACAAACACTTTTTGCCGTCT
TCAGGTAAGGACTCTTAATATCAATATCTCTTATCGAGTCATGTTATGGT
AATACACAGGGTGCAAAATTAAAGTCTAAAGACAAAATCACGTTTTACTC
GAAATATTTATGTGTTTGTTACATGACATCTATTTCCGATTTGTTCGAAT
TTATTGACACTAATAAAGATATCAGCTGTAAGTTGTAAAGCAAGTAACAT
GGGAATAAGATCACGTGAACTTTTTCGAGTAATCACATGTTTTGACTGCA
TTGGTATGATTTTGCAAGCCGTGTATACAGCTAATACTGAATCCAGGCCT
CAAATTCTTGTATTCCCTCATATACAGGTATGGAAAACTATCCACGTAAC
GGAACGGATGTAGATGGTGCTGCTATTACGGAACTCTTCCAAGAGATGGG
ATTCCTCGTAGAAGCTCACAGTAATCTCTCCGTCTACGAAATGCGGAAAG
TTTTCAAACAGGCCGCACACAAAGACTATTCCGGAGTATCGTGTCTAACT
TGTTGTATACTAAGTCACGGACAAGAAGGTGTGATTTACGGTACAGATGG
TACGATTGAGATTCGTGAGATTACGTCATTCTTCCACGGAACGAATTTAT
CAGGAAAACCGAAATTGTTCTTTTTCCAGGCGTGTCAAGGTATGACTTTT
TCATTTTTCACCTCTTCTTAATGATTGTTTTCCCATTGTTTTCAAATGGT
TTTCGTTATCCGAATTGTGAGATTTTTTCTTTGTCAGATTTTTTTATCAA
TTCCATCATTACTTTTGTACCTCGATGACCTGGGAATCAGCTACTCCTGA
TTATAGGGTGACTGAGACATAAAGTTTCTCTATTTGCCTCATTTGCCTAT
CAGGTCTGGGTTTCAGAGGCTCGGTCACCCAAGATAAGTAATGGAGGCTT
GACTAGTTATCCATTTGCTCTCTTTCTCACTTAAGATGTCACTTTTTGGA
CCTACCTGGAGATCCTATATAAATTCACTATTTTCTCATTATTTTTCCTG
ACTTTTATCAGTGTTCAAAGTTTTTCCGTCTCAGCGAGGTGCAAAAAGAG
GCTTTTTTGTCTCTAGATTCAACAAAATTCTGCAAAACATGAATAATCTG
GCCAGATTTGATGTTTGTAAAGTCTATTTCTGTCGAATTTTGATCGACAC
TTGCTTTGACCACTGTTTTATGTTTATTTTGAATTCAATGTTTTCTATTG
ATCACTTGTTTACGAATTATTTCACCTACATGACCCTTCATCCTTTCAAA
ATAATTTCTGTTTTTGTCTCGTTCTCCCAGGCTCAGATTATATGGATTCA
GTTACACCAGACGAGGTAATGGAGACAGACGGGCCAGCGAGTGAAGGGAA
TGATATAACACTACCATCAGAAGCAGATTTCTTATACGCCTATTCAACGG
TACCTGGATATTATTCGTGGCGAAATTCTCAAAGAGGATCTTGGTGAGTT
TCTAAGAGAATATTCATCTAACGTTTCCAGACAATCTAAAAAGAACGACA
AATCACTATTAAAAAGCGACATAAAGAACAATAAACCCTGATCCTAACTA
TTTTGCCGTCCCAAACCCCGACGTTGGTCAGTGACTACATTCATTAATTT
TTGTACTTTACGCTATTTAACGACTAGCGGTTTAAAGAACGATAAATTAC
GCATACGTACAAGTCTCTATTTGGGTGAGCTGGAAACATTAGATGAACTA
TTCTAACTCTAATACGTTTTTAACGCTTTTAATAACACGCGTCAGTTGTT
TTAAAGATTTCATGAATCACTCGTGATGCTCCAAAAGTGAACGGGCAAAT
GTCCTCGTCCGAAAATGTTTAACACAAAAGGAAAGTTGTACAAACAAAAT
AGGTGTCATTTTCTCAGACAGAAACTCAAACGCACTATTTTTACATAACT
CAACGATAGGCCAAGAATCTCAAAGAAGAGGAACGACCCTAACACAACAT
CAAATTTGTTGTGTGTCATTTTCCTCGGGGTCTTAATTGTCTTAAGTAAA
TTACGCGATTCTTTTAAAAATTAGTCAATCACAAAGCCGTTAAACCGAAC
AGATACCTTTAAGTTTGGCAGACGTTCTTTCGGCCTTCAGATCACACGGG
TAAAATGCATGAAACAATTAGGCTGTTCGGATGTTAGAAAACATAATAGT
AAACACCAACCGTTTATGATTTAAGTGAAATGAACCCAATTAACACATTC
ATTTGGTCAAAATAACAGTGGTACTTCAAAGGGCCATAACTTTTTATATA
GAAACTTTTGCATGTTTTATTGTATTTTTGGAACTTACTATACGCGTCGA
TCGGATTACGATTCGCATGCACTTGAAGGAGAGGGGGATCCACAGGAGCC
TCTGAAAGGCAAACTTTTGATAAAATTCCAAGAGGTCAAATTTTTCGGCT
TCTAAAAAGGGCTCTGCAGTTAACGTTAATATATCATTGTTTCAACTCTT
TCTCAGGTTTATTCAATCCATTTGTGAAGTGTTCCGTAAGCATGCGCATA
AAATGGACGTGGTACGTATGCTAACACGTGTCAACGCAATCGTCTCTACG
AAGAAATCACAAACGGGACAACGTGCTTCACACCACAAGCGTCAAATCTC
ATCTATAGTTACGCAGTTACGTAAAGAACTTTATTTCTTCCCNGTCAAAT
CTCATCTATAGTTACACAGTTACGTAAAGAACTTTATTTCTTCCCTATGC
ACGGGCCGTTGGCTACATATCAAGGGAATTATTAATTTTTTGGTTGGTTT
GTTAAGGGCCATTGATGCACTGATGACTGATTTAGACACTAAATGGAGTT
ACTCTATTGCTTCCAGGATCTTGACCTTAAAGCAAAATAATGAGCCATCT
TAGACCATAAAATAACCTATTTTCTTATTGCTGGCACTACAACGGCATTA
AAATATAAAGGCATCTCATGAGCAAAAACGTGGCTTACTTAAGTTGACAC
AAAATTTCACAACACCAGAGAGAAGCGCCATCTAGTGTTTAATGAAAGGA
ATCTGTGTGTTTAAGGCCTCGTTACATTTCCTGAAAAATAGTAAGTACTC
AAACTTTAGGGTCCGTATAGACTGTTTATTTTTTTCTTCTTACTTCATTT
CAAAAATGATACTGTACTTTTTTGTGTGTGCGCGGTGTACGATTTTGGTT
CAAAGTTCTGCATTTTCAACATTTAATATAATTTAGTTTAATTTAGTAAT
AATTTAGTTAATTTAGTATTTTTCCATATTTTTTTCTATTCACCTTTGAT
TGGTATTTGTTTATACTCGTTTCGGTTTATTGCCGGAAAAAGTATCAATT
CATATTGTTTCTTACCGCGTGGCATTTTACCAAGAATTGCTTTACTGCTG
GCATCCAATATAAGGGTTTTTGTTGTATTATGTGGTTTAGTACAGACCTG
TAATTCATTCTAAGAATTAAAAGCATTGATTTTTCTTTGCGTTTTCTACG
AAACTCTTCTGGACAGTATTCTTTATCTCGGTAAAGGCTTTTTATGACCA
ATTTTTTAAATCCAAATTTATTAAACTTTATTTTATTATATGATACCAGA
TTAATTTTCTATGTCTTTCATTATGCTTTGCTCGTTTCGCCAGGTTTGCT
GATAAGATGCCGAATTTAGGGTTTTGAATCTAAAGATATTGTTGGTCTCT
TACCTAATTTTAAATTGTGACTACGAATTCTACAGATAAAAGTCTTCTTG
ACGATTTCTCGAGTAATCGTTTCTCTCAAAGTCTAATCGCTTTAAATGTG
GACTCTTCTTTGCTTCCACGTGGAAACTAAGTCAGTGTAATTAAACTGAC
TCCCTTGAGAGTGTTTTTGGAGGATATAATAGAGGAAAATAACAGGCTGG
AAAGCAAACACGACTTCGCTTAGAAAACTAGATGAAAGTATAGTTTTTGG
ACTCTACCAGGTTTGAGGAGTAATCTTCGGTTGTTATTTTTCATAATTTC
AGTTTATATGATAATAATTTATATAGATACTGTATAAAAATATTTACGCC
TACCAACCTTTTTGTCACAAGAGGATCAGAGAAAAGTTTACCAGGTTCGG
ATAATGTTTTTTGGTGTTTTTCCTTTAAAAAAGTTATTTGCTTTGTTTTT
GCTAAGCTGCCGAATTCTTATTTAGTAAGCTCAATGTTTTGATTATTTCA
TCAGCCGTTAAATCGTTGCAAATCTCTCCCTAACTTGGGTCTTAGCTCGA
TGTTTGTTTGGCAAAAATTGACTCGTGCCTAAGCTCGGATCCAATCCTTT
TTTAAGGGTTGATAGGCGTATTCATTTCCCATCTTCATTCATCATTAATA
TTAGTACGAACCTTTAGTAAAAATTATTGTATTTTTTATAAAATTCTATA
CATTAAAAAGATAGATATTACGTTGATTTTGAA

Coding sequence (CDS) from alignment at scaffold_179:100249..108531-

>TCONS_00050538 ID=TCONS_00050538|Name=TCONS_00050538|organism=Clytia hemisphaerica|type=CDS|length=8226bp|location=Sequence derived from alignment at scaffold_179:100249..108531- (Clytia hemisphaerica)
GTTTATTCAATCCATTTGTGAAGTGTTCCGTAAGCATGCGCATAAAATGG
ACGTGGTACGTATGCTAACACGTGTCAACGCAATCGTCTCTACGAAGAAA
TCACAAACGGGACAACGTGCTTCACACCACAAGCGTCAAATCTCATCTAT
AGTTACGCAGTTACGTAAAGAACTTTATTTCTTCCCNGTCAAATCTCATC
TATAGGCTCAGATTATATGGATTCAGTTACACCAGACGAGGTAATGGAGA
CAGACGGGCCAGCGAGTGAAGGGAATGATATAACACTACCATCAGAAGCA
GATTTCTTATACGCCTATTCAACGGTACCTGGATATTATTCGTGGCGAAA
TTCTCAAAGAGGATCTTGGTATGGAAAACTATCCACGTAACGGAACGGAT
GTAGATGGTGCTGCTATTACGGAACTCTTCCAAGAGATGGGATTCCTCGT
AGAAGCTCACAGTAATCTCTCCGTCTACGAAATGCGGAAAGTTTTCAAAC
AGGCCGCACACAAAGACTATTCCGGAGTATCGTGTCTAACTTGTTGTATA
CTAAGTCACGGACAAGAAGGTGTGATTTACGGTACAGATGGTACGATTGA
GATTCGTGAGATTACGTCATTCTTCCACGGAACGAATTTATCAGGAAAAC
CGAAATTGTTCTTTTTCCAGGCGTGTCAAGAAACGGAGACAGACGGCCGA
CCAAGTTTGTTCGGTGGTAGTGGTAAAAAGAAGACCAAAACTTCGTCCAC
CTCTGAAGGGGATGAACGTGTTCCTCTGTCACCTTCAAGCTTTATAGAAG
CTCCTATTGACCTGAAGGAATGCTACGCCATGCAGTCAACACCGCGCGGT
CATTTCATTTTGGTCAACAACAAACACTTTTTGCCGTCTTCAGACAAAAC
AAAAATGGAAGATGATAGAACTGATGGTCCACCAAGACAATTACCTTTGA
AAGAACAAAACCCTGATGATGAAAAACCAACAGAAGACACGGTTGATACT
CCACCTGTCAGAAAAAGTAAACAAATTATTGGTATTGATTGCAGTAGTAA
TGGATAGTAGAGATCGTGAGTTCTTGCGTTCAAATCGCAGAGAAATATGT
CTTATAGACTTTGATGCACCCAATGTTGCTTCAAAACTTCATGAACTTGG
TATCCTATCGAAAAATGAGAATGAAATGATTTCATTAGAGGAAAAAGACT
TGAGACAAAAGGAGAGACTGTTGGATATTTTACCAAGAAGGGGACCAAAA
GCTTTTGCAAAATTCATTGAAACTGCAAAAGAATTAAGAATATTGAAATT
ATATAAGATACTTGGTGGGGATCCAGCATTGTATGGTGATGGGGAAAGCA
AAGTGTCTTCAGAAGAGACAGGTTTATTCAATCCATTTGTGAAGTGTTCC
GTAAGCATGCGCATAAAATGGACGTGGTACGTATGCTAACACGTGTCAAC
GCAATCGTCTCTACGAAGAAATCACAAACGGGACAACGTGCTTCACACCA
CAAGCGTCAAATCTCATCTATAGTTACGCAGTTACGTAAAGAACTTTATT
TCTTCCCNGTCAAATCTCATCTATAGGCTCAGATTATATGGATTCAGTTA
CACCAGACGAGGTAATGGAGACAGACGGGCCAGCGAGTGAAGGGAATGAT
ATAACACTACCATCAGAAGCAGATTTCTTATACGCCTATTCAACGGTACC
TGGATATTATTCGTGGCGAAATTCTCAAAGAGGATCTTGGTATGGAAAAC
TATCCACGTAACGGAACGGATGTAGATGGTGCTGCTATTACGGAACTCTT
CCAAGAGATGGGATTCCTCGTAGAAGCTCACAGTAATCTCTCCGTCTACG
AAATGCGGAAAGTTTTCAAACAGGCCGCACACAAAGACTATTCCGGAGTA
TCGTGTCTAACTTGTTGTATACTAAGTCACGGACAAGAAGGTGTGATTTA
CGGTACAGATGGTACGATTGAGATTCGTGAGATTACGTCATTCTTCCACG
GAACGAATTTATCAGGAAAACCGAAATTGTTCTTTTTCCAGGCGTGTCAA
GAAACGGAGACAGACGGCCGACCAAGTTTGTTCGGTGGTAGTGGTAAAAA
GAAGACCAAAACTTCGTCCACCTCTGAAGGGGATGAACGTGTTCCTCTGT
CACCTTCAAGCTTTATAGAAGCTCCTATTGACCTGAAGGAATGCTACGCC
ATGCAGTCAACACCGCGCGGTCATTTCATTTTGGTCAACAACAAACACTT
TTTGCCGTCTTCAGACAAAACAAAAATGGAAGATGATAGAACTGATGGTC
CACCAAGACAATTACCTTTGAAAGAACAAAACCCTGATGATGAAAAACCA
ACAGAAGACACGGTTGATACTCCACCTGTCAGAAAAAGTAAACAAATTAT
TGGTATTGATTGCAGTAGTAATGGATAGTAGAGATCGTGAGTTCTTGCGT
TCAAATCGCAGAGAAATATGTCTTATAGACTTTGATGCACCCAATGTTGC
TTCAAAACTTCATGAACTTGGTATCCTATCGAAAAATGAGAATGAAATGA
TTTCATTAGAGGAAAAAGACTTGAGACAAAAGGAGAGACTGTTGGATATT
TTACCAAGAAGGGGACCAAAAGCTTTTGCAAAATTCATTGAAACTGCAAA
AGAATTAAGAATATTGAAATTATATAAGATACTTGGTGGGGATCCAGCAT
TGTATGGTGATGGGGAAAGCAAAGTGTCTTCAGAAGAGACAGGTTTATTC
AATCCATTTGTGAAGTGTTCCGTAAGCATGCGCATAAAATGGACGTGGTA
CGTATGCTAACACGTGTCAACGCAATCGTCTCTACGAAGAAATCACAAAC
GGGACAACGTGCTTCACACCACAAGCGTCAAATCTCATCTATAGTTACGC
AGTTACGTAAAGAACTTTATTTCTTCCCNGTCAAATCTCATCTATAGGCT
CAGATTATATGGATTCAGTTACACCAGACGAGGTAATGGAGACAGACGGG
CCAGCGAGTGAAGGGAATGATATAACACTACCATCAGAAGCAGATTTCTT
ATACGCCTATTCAACGGTACCTGGATATTATTCGTGGCGAAATTCTCAAA
GAGGATCTTGGTATGGAAAACTATCCACGTAACGGAACGGATGTAGATGG
TGCTGCTATTACGGAACTCTTCCAAGAGATGGGATTCCTCGTAGAAGCTC
ACAGTAATCTCTCCGTCTACGAAATGCGGAAAGTTTTCAAACAGGCCGCA
CACAAAGACTATTCCGGAGTATCGTGTCTAACTTGTTGTATACTAAGTCA
CGGACAAGAAGGTGTGATTTACGGTACAGATGGTACGATTGAGATTCGTG
AGATTACGTCATTCTTCCACGGAACGAATTTATCAGGAAAACCGAAATTG
TTCTTTTTCCAGGCGTGTCAAGAAACGGAGACAGACGGCCGACCAAGTTT
GTTCGGTGGTAGTGGTAAAAAGAAGACCAAAACTTCGTCCACCTCTGAAG
GGGATGAACGTGTTCCTCTGTCACCTTCAAGCTTTATAGAAGCTCCTATT
GACCTGAAGGAATGCTACGCCATGCAGTCAACACCGCGCGGTCATTTCAT
TTTGGTCAACAACAAACACTTTTTGCCGTCTTCAGACAAAACAAAAATGG
AAGATGATAGAACTGATGGTCCACCAAGACAATTACCTTTGAAAGAACAA
AACCCTGATGATGAAAAACCAACAGAAGACACGGTTGATACTCCACCTGT
CAGAAAAAGTAAACAAATTATTGGTATTGATTGCAGTAGTAATGGATAGT
AGAGATCGTGAGTTCTTGCGTTCAAATCGCAGAGAAATATGTCTTATAGA
CTTTGATGCACCCAATGTTGCTTCAAAACTTCATGAACTTGGTATCCTAT
CGAAAAATGAGAATGAAATGATTTCATTAGAGGAAAAAGACTTGAGACAA
AAGGAGAGACTGTTGGATATTTTACCAAGAAGGGGACCAAAAGCTTTTGC
AAAATTCATTGAAACTGCAAAAGAATTAAGAATATTGAAATTATATAAGA
TACTTGGTGGGGATCCAGCATTGTATGGTGATGGGGAAAGCAAAGTGTCT
TCAGAAGAGACAGGTTTATTCAATCCATTTGTGAAGTGTTCCGTAAGCAT
GCGCATAAAATGGACGTGGTACGTATGCTAACACGTGTCAACGCAATCGT
CTCTACGAAGAAATCACAAACGGGACAACGTGCTTCACACCACAAGCGTC
AAATCTCATCTATAGTTACGCAGTTACGTAAAGAACTTTATTTCTTCCCN
GTCAAATCTCATCTATAGGCTCAGATTATATGGATTCAGTTACACCAGAC
GAGGTAATGGAGACAGACGGGCCAGCGAGTGAAGGGAATGATATAACACT
ACCATCAGAAGCAGATTTCTTATACGCCTATTCAACGGTACCTGGATATT
ATTCGTGGCGAAATTCTCAAAGAGGATCTTGGTATGGAAAACTATCCACG
TAACGGAACGGATGTAGATGGTGCTGCTATTACGGAACTCTTCCAAGAGA
TGGGATTCCTCGTAGAAGCTCACAGTAATCTCTCCGTCTACGAAATGCGG
AAAGTTTTCAAACAGGCCGCACACAAAGACTATTCCGGAGTATCGTGTCT
AACTTGTTGTATACTAAGTCACGGACAAGAAGGTGTGATTTACGGTACAG
ATGGTACGATTGAGATTCGTGAGATTACGTCATTCTTCCACGGAACGAAT
TTATCAGGAAAACCGAAATTGTTCTTTTTCCAGGCGTGTCAAGAAACGGA
GACAGACGGCCGACCAAGTTTGTTCGGTGGTAGTGGTAAAAAGAAGACCA
AAACTTCGTCCACCTCTGAAGGGGATGAACGTGTTCCTCTGTCACCTTCA
AGCTTTATAGAAGCTCCTATTGACCTGAAGGAATGCTACGCCATGCAGTC
AACACCGCGCGGTCATTTCATTTTGGTCAACAACAAACACTTTTTGCCGT
CTTCAGACAAAACAAAAATGGAAGATGATAGAACTGATGGTCCACCAAGA
CAATTACCTTTGAAAGAACAAAACCCTGATGATGAAAAACCAACAGAAGA
CACGGTTGATACTCCACCTGTCAGAAAAAGTAAACAAATTATTGGTATTG
ATTGCAGTAGTAATGGATAGTAGAGATCGTGAGTTCTTGCGTTCAAATCG
CAGAGAAATATGTCTTATAGACTTTGATGCACCCAATGTTGCTTCAAAAC
TTCATGAACTTGGTATCCTATCGAAAAATGAGAATGAAATGATTTCATTA
GAGGAAAAAGACTTGAGACAAAAGGAGAGACTGTTGGATATTTTACCAAG
AAGGGGACCAAAAGCTTTTGCAAAATTCATTGAAACTGCAAAAGAATTAA
GAATATTGAAATTATATAAGATACTTGGTGGGGATCCAGCATTGTATGGT
GATGGGGAAAGCAAAGTGTCTTCAGAAGAGACAGGTTTATTCAATCCATT
TGTGAAGTGTTCCGTAAGCATGCGCATAAAATGGACGTGGTACGTATGCT
AACACGTGTCAACGCAATCGTCTCTACGAAGAAATCACAAACGGGACAAC
GTGCTTCACACCACAAGCGTCAAATCTCATCTATAGTTACGCAGTTACGT
AAAGAACTTTATTTCTTCCCNGTCAAATCTCATCTATAGGCTCAGATTAT
ATGGATTCAGTTACACCAGACGAGGTAATGGAGACAGACGGGCCAGCGAG
TGAAGGGAATGATATAACACTACCATCAGAAGCAGATTTCTTATACGCCT
ATTCAACGGTACCTGGATATTATTCGTGGCGAAATTCTCAAAGAGGATCT
TGGTATGGAAAACTATCCACGTAACGGAACGGATGTAGATGGTGCTGCTA
TTACGGAACTCTTCCAAGAGATGGGATTCCTCGTAGAAGCTCACAGTAAT
CTCTCCGTCTACGAAATGCGGAAAGTTTTCAAACAGGCCGCACACAAAGA
CTATTCCGGAGTATCGTGTCTAACTTGTTGTATACTAAGTCACGGACAAG
AAGGTGTGATTTACGGTACAGATGGTACGATTGAGATTCGTGAGATTACG
TCATTCTTCCACGGAACGAATTTATCAGGAAAACCGAAATTGTTCTTTTT
CCAGGCGTGTCAAGAAACGGAGACAGACGGCCGACCAAGTTTGTTCGGTG
GTAGTGGTAAAAAGAAGACCAAAACTTCGTCCACCTCTGAAGGGGATGAA
CGTGTTCCTCTGTCACCTTCAAGCTTTATAGAAGCTCCTATTGACCTGAA
GGAATGCTACGCCATGCAGTCAACACCGCGCGGTCATTTCATTTTGGTCA
ACAACAAACACTTTTTGCCGTCTTCAGACAAAACAAAAATGGAAGATGAT
AGAACTGATGGTCCACCAAGACAATTACCTTTGAAAGAACAAAACCCTGA
TGATGAAAAACCAACAGAAGACACGGTTGATACTCCACCTGTCAGAAAAA
GTAAACAAATTATTGGTATTGATTGCAGTAGTAATGGATAGTAGAGATCG
TGAGTTCTTGCGTTCAAATCGCAGAGAAATATGTCTTATAGACTTTGATG
CACCCAATGTTGCTTCAAAACTTCATGAACTTGGTATCCTATCGAAAAAT
GAGAATGAAATGATTTCATTAGAGGAAAAAGACTTGAGACAAAAGGAGAG
ACTGTTGGATATTTTACCAAGAAGGGGACCAAAAGCTTTTGCAAAATTCA
TTGAAACTGCAAAAGAATTAAGAATATTGAAATTATATAAGATACTTGGT
GGGGATCCAGCATTGTATGGTGATGGGGAAAGCAAAGTGTCTTCAGAAGA
GACAGGTTTATTCAATCCATTTGTGAAGTGTTCCGTAAGCATGCGCATAA
AATGGACGTGGTACGTATGCTAACACGTGTCAACGCAATCGTCTCTACGA
AGAAATCACAAACGGGACAACGTGCTTCACACCACAAGCGTCAAATCTCA
TCTATAGTTACGCAGTTACGTAAAGAACTTTATTTCTTCCCNGTCAAATC
TCATCTATAGGCTCAGATTATATGGATTCAGTTACACCAGACGAGGTAAT
GGAGACAGACGGGCCAGCGAGTGAAGGGAATGATATAACACTACCATCAG
AAGCAGATTTCTTATACGCCTATTCAACGGTACCTGGATATTATTCGTGG
CGAAATTCTCAAAGAGGATCTTGGTATGGAAAACTATCCACGTAACGGAA
CGGATGTAGATGGTGCTGCTATTACGGAACTCTTCCAAGAGATGGGATTC
CTCGTAGAAGCTCACAGTAATCTCTCCGTCTACGAAATGCGGAAAGTTTT
CAAACAGGCCGCACACAAAGACTATTCCGGAGTATCGTGTCTAACTTGTT
GTATACTAAGTCACGGACAAGAAGGTGTGATTTACGGTACAGATGGTACG
ATTGAGATTCGTGAGATTACGTCATTCTTCCACGGAACGAATTTATCAGG
AAAACCGAAATTGTTCTTTTTCCAGGCGTGTCAAGAAACGGAGACAGACG
GCCGACCAAGTTTGTTCGGTGGTAGTGGTAAAAAGAAGACCAAAACTTCG
TCCACCTCTGAAGGGGATGAACGTGTTCCTCTGTCACCTTCAAGCTTTAT
AGAAGCTCCTATTGACCTGAAGGAATGCTACGCCATGCAGTCAACACCGC
GCGGTCATTTCATTTTGGTCAACAACAAACACTTTTTGCCGTCTTCAGAC
AAAACAAAAATGGAAGATGATAGAACTGATGGTCCACCAAGACAATTACC
TTTGAAAGAACAAAACCCTGATGATGAAAAACCAACAGAAGACACGGTTG
ATACTCCACCTGTCAGAAAAAGTAAACAAATTATTGGTATTGATTGCAGT
AGTAATGGATAGTAGAGATCGTGAGTTCTTGCGTTCAAATCGCAGAGAAA
TATGTCTTATAGACTTTGATGCACCCAATGTTGCTTCAAAACTTCATGAA
CTTGGTATCCTATCGAAAAATGAGAATGAAATGATTTCATTAGAGGAAAA
AGACTTGAGACAAAAGGAGAGACTGTTGGATATTTTACCAAGAAGGGGAC
CAAAAGCTTTTGCAAAATTCATTGAAACTGCAAAAGAATTAAGAATATTG
AAATTATATAAGATACTTGGTGGGGATCCAGCATTGTATGGTGATGGGGA
AAGCAAAGTGTCTTCAGAAGAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032007XLOC_032007Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050538-proteinTCONS_00050538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050538-exon-scaffold_179-1575043694:108167..108531TCONS_00050538-exon-scaffold_179-1575043694:108167..108531Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1575043694:105230..105343TCONS_00050538-exon-scaffold_179-1575043694:105230..105343Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1575043694:104628..104840TCONS_00050538-exon-scaffold_179-1575043694:104628..104840Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1575043694:103993..104304TCONS_00050538-exon-scaffold_179-1575043694:103993..104304Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1575043694:103189..103351TCONS_00050538-exon-scaffold_179-1575043694:103189..103351Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1575043694:100249..102175TCONS_00050538-exon-scaffold_179-1575043694:100249..102175Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1510915933:108167..108531TCONS_00050538-exon-scaffold_179-1510915933:108167..108531Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1510915933:105230..105343TCONS_00050538-exon-scaffold_179-1510915933:105230..105343Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1510915933:104628..104840TCONS_00050538-exon-scaffold_179-1510915933:104628..104840Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1510915933:103993..104304TCONS_00050538-exon-scaffold_179-1510915933:103993..104304Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1510915933:103189..103351TCONS_00050538-exon-scaffold_179-1510915933:103189..103351Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1510915933:100249..102175TCONS_00050538-exon-scaffold_179-1510915933:100249..102175Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1491911889:108167..108531TCONS_00050538-exon-scaffold_179-1491911889:108167..108531Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1491911889:105230..105343TCONS_00050538-exon-scaffold_179-1491911889:105230..105343Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1491911889:104628..104840TCONS_00050538-exon-scaffold_179-1491911889:104628..104840Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1491911889:103993..104304TCONS_00050538-exon-scaffold_179-1491911889:103993..104304Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1491911889:103189..103351TCONS_00050538-exon-scaffold_179-1491911889:103189..103351Clytia hemisphaericaexon
TCONS_00050538-exon-scaffold_179-1491911889:100249..102175TCONS_00050538-exon-scaffold_179-1491911889:100249..102175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:100249..108531 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.32082	6.05587	2.45056	2.50647	17.5455	13.6812	19.2251	22.3351	16.0726	24.7604	16.1965	11.0728	13.8054	13.131	18.0576	21.8365	20.531	16.4829	10.5494	15.7038	15.4091	16.0063	12.3374	15.6646	18.6427	22.9541	11.7023	9.19577	29.9324	24.5584
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015917Pept_C14A
IPR001315CARD
IPR033139Caspase_cys_AS
IPR001309Pept_C14_p20
IPR002138Pept_C14_p10
IPR011029DEATH-like_dom
IPR029030Caspase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0004197cysteine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0042981 regulation of apoptotic process
molecular_function GO:0004197 cysteine-type endopeptidase activity
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
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BLAST of TCONS_00050538 vs. Swiss-Prot (Human)
Match: CASP3 (Caspase-3 OS=Homo sapiens GN=CASP3 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.907e-61
Identity = 108/260 (41.54%), Postives = 169/260 (65.00%), Query Frame = 2 
Query:  584 SSFIEAPIDLKECYAMQSTPRGHFILVNNKHFLPSSGMENYPRNGTDVDGAAITELFQEMGFLVEAHSNLSVYEMRKVFKQAAHKDYSGVSCLTCCILSHGQEGVIYGTDGTIEIREITSFFHGT---NLSGKPKLFFFQACQGSDYMDSVTPDEVMETDGPASEGNDITLPSEADFLYAYSTVPGYYSWRNSQRGSWFIQSICEVFRKHAHKMDVVRMLTRVNAIVSTK-KSQTGQRASHHKRQISSIVTQLRKELYFF 1351
            S  +++ I L   Y M     G  I++NNK+F  S+GM +  R+GTDVD A + E F+ + + V   ++L+  E+ ++ +  + +D+S  S   C +LSHG+EG+I+GT+G +++++IT+FF G    +L+GKPKLF  QAC+G++    +  D  ++ D    +     +P EADFLYAYST PGYYSWRNS+ GSWFIQS+C + +++A K++ + +LTRVN  V+T+ +S +     H K+QI  IV+ L KELYF+
Sbjct:   24 SESMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTS--RSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETDSGVDDDMACHK-----IPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFY 276
The following BLAST results are available for this feature:
BLAST of TCONS_00050538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASP32.907e-6141.54Caspase-3 OS=Homo sapiens GN=CASP3 PE=1 SV=2[more]
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