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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050537 ID=TCONS_00050537|Name=TCONS_00050537|organism=Clytia hemisphaerica|type=transcript|length=2487bpRun BLAST on NCBI protein sequence of TCONS_00050537-protein >TCONS_00050537-protein ID=TCONS_00050537-protein|Name=TCONS_00050537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp MSTYVIKARGLPWSATPSEVTKFFSDVNILNGENGVHFTFNKEGRPSGECRun BLAST on NCBI transcript from alignment at scaffold_179:57217..80749- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050537 ID=TCONS_00050537|Name=TCONS_00050537|organism=Clytia hemisphaerica|type=transcript|length=23533bp|location=Sequence derived from alignment at scaffold_179:57217..80749- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_179:57217..80749- >TCONS_00050537 ID=TCONS_00050537|Name=TCONS_00050537|organism=Clytia hemisphaerica|type=CDS|length=14070bp|location=Sequence derived from alignment at scaffold_179:57217..80749- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050537 vs. Swiss-Prot (Human)
Match: HNRPF (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3) HSP 1 Score: 221.861 bits (564), Expect = 1.059e-63 Identity = 108/214 (50.47%), Postives = 149/214 (69.63%), Query Frame = 3
Query: 597 YVIKARGLPWSATPSEVTKFFSDVNILNGENGVHFTFNKEGRPSGECFIEVGTEADREAALAHDNEHMGKRYIEIKEAKHTEMEWVVNKMGHEPGNTEN--IVRLRGLPYGCTKQDIDAFFPGLQIIPHGITLTMDQDGRASGDAYIEFASSSDVEEALKKHKEKMGHRYIEVFRSSRNDIKHVVGQRNFGGGP-KFMG-QRPGPYDRPNFPRR 1226
+V+K RGLPWS + +V F SD I +G GVHF + +EGR SGE F+E+G+E D + AL D E MG RYIE+ ++ TEM+WV+ G ++ N VRLRGLP+GCTK++I FF GL+I+P+GITL +D +G+ +G+A+++FAS E+AL KHKE++GHRYIEVF+SS+ ++ R++ P KFM QRPGPYDRP RR
Sbjct: 11 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV------RSYSDPPLKFMSVQRPGPYDRPGTARR 218 HSP 2 Score: 102.064 bits (253), Expect = 7.241e-23 Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 3
Query: 1395 SKTGHCVHLRGLPFEATTKDVNNFFAPLNPVDIRILYDQVSGRAKGECDVDFSTHADAEAAMQKDKQNIGHRYIELFL 1628
S TGHCVH+RGLP++AT D+ NFF+PLNPV + I GR GE DV+F+TH +A AAM KD+ N+ HRYIELFL
Sbjct: 285 STTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 361 The following BLAST results are available for this feature:
BLAST of TCONS_00050537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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