TCONS_00050532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050532
Unique NameTCONS_00050532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050532 ID=TCONS_00050532|Name=TCONS_00050532|organism=Clytia hemisphaerica|type=transcript|length=157bp
ttaCAGTGGAATGGATGATGAAGTACGAGCTCCTATTCCACAAAAACAAG
CTGTTCTTGTCGAGGATGAATACCATGCACTTCCATATCCTCAAAGAAGG
CAACGAAGTGCAGCAAGAAATGCATTTGATGGCTTTCGCGACTTCAAAAA
AGAAGCA
Run BLAST on NCBI

transcript from alignment at scaffold_179:555942..556357+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050532 ID=TCONS_00050532|Name=TCONS_00050532|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at scaffold_179:555942..556357+ (Clytia hemisphaerica)
ttaCAGTGGAATGGATGATGAAGTACGAGCTCCTATTCCACAAAAACAAG
CTGTTCTTGTCGAGGATGAATACCATGGTAGGATAcaagaaaaactattg
ttttgGAAATTCATCATTATACAAATATAAGTTGACTATTGGATgattga
attgaaaaatgtcattataaaaacatcaACTCATcaagcatctttttaaa
attttgctcgTCAAGACCTGAAAACTTCGATATCTCGAATCAACCTCCAA
AGCtctgttttttaataaaacttaCTGAAGCAACTATCCATAAATGTTGA
CCATAATTGAAGGTAGTGCTGCTCCTTTTTTTCTAGCACTTCCATATCCT
CAAAGAAGGCAACGAAGTGCAGCAAGAAATGCATTTGATGGCTTTCGCGA
CTTCAAAAAAGAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032002XLOC_032002Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050532-exon-scaffold_179-1491911889:555942..556018TCONS_00050532-exon-scaffold_179-1491911889:555942..556018Clytia hemisphaericaexon
TCONS_00050532-exon-scaffold_179-1510915933:555942..556018TCONS_00050532-exon-scaffold_179-1510915933:555942..556018Clytia hemisphaericaexon
TCONS_00050532-exon-scaffold_179-1575043694:555942..556018TCONS_00050532-exon-scaffold_179-1575043694:555942..556018Clytia hemisphaericaexon
TCONS_00050532-exon-scaffold_179-1491911889:556278..556357TCONS_00050532-exon-scaffold_179-1491911889:556278..556357Clytia hemisphaericaexon
TCONS_00050532-exon-scaffold_179-1510915933:556278..556357TCONS_00050532-exon-scaffold_179-1510915933:556278..556357Clytia hemisphaericaexon
TCONS_00050532-exon-scaffold_179-1575043694:556278..556357TCONS_00050532-exon-scaffold_179-1575043694:556278..556357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:555942..556357 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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