TCONS_00050528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050528
Unique NameTCONS_00050528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050528 ID=TCONS_00050528|Name=TCONS_00050528|organism=Clytia hemisphaerica|type=transcript|length=2534bp
aaaatcGTCTGCTAGTAGTAGCAAATTTGTGTAAGCACAAATTCTACAct
ttttgtctgtttttttttaacaaatttaacCGAGACACGCATAGAGGAAG
ATATCTTTCGCCATGACTTCGGgtaCAATGGAGGAAAGCCAGCTTCGCAC
AAGCACCATTGAACTCATTTCATCAATCCATGGCACCCAAAGACGTGCTG
AACGTGCCATAGATGTCAAGGATCTCAAATCAGCAATAAAACACGGCAAA
AAGGAGCCTCAAATACGATATCGCAATGGTCAGAAACAGATTCGCTATAA
ATATACGTTTGCTGATGTTGTCTATATCACTGATGAATTCAGTCGACTAG
AGATAACAAGTTATGTTTTACCGCTACCCTTGGATAATTACCACGTCCTG
GATACTGAGGAGCATCAATACCTTGCTGCAAAGAGGCGAATGACTGAAAA
CCCCGGCTCTATAACTTCGCATGCTGTATTTGTTGTCGATTGCAGCGGTT
CAATGAAGAACAGTGATGTTGTTGCACACCGGTGCCGGCTGGATGCTGTT
CAGTACGGCATTGCTGTGGAGTTCATTGCAAAACGTTTGCATAATCCATC
ATCTGGTGTCACTCAATTAGATGTGGTGACCATAATCGAAATGAGAGATG
AAGCCAAAGTTGTGTTCGAAAAAGAACCAGTTAGTTGGGTGTTGTACAAT
AAATTGGTAGACCATGCAAAGCATAGCAAACCATCTTCACATGGCAATTA
TTATCCAGCTCTTCAAACCGCACGTCAGATGTTAAGTGATGGTGACCATC
CAAATCTAGCCTTATTACTTTTCTTTCTCTCTGATGGCCGACCAAGCGAC
GAGAGCTTCAATATCAGTANGttacttttttttctctctGATGGCCGACC
AAGCGACGAGAGCTTCAATATCAGTATTTCAAATATCTTGTGTGAAGCTC
AAATGATTGGCAAAGTCTTCAAAAAGCGATTGAATTTCGGCATGGTTGCA
TATGGTAGGCCTTTGGAAGATATGAGTGTGTTGGATCAAATGGCAACATG
GATGTCAATGTACGGAGCTGTTGGCAAATTTCATCGCTCTGATCTCAAGA
AGGTGGATTCTCTTTCAACCTCCATTGCAACTATGGCAAGTACATTGACG
AGCACCCGTACTATGCTGACAGCAGCTCGCACAGATCGAATGCAACAGAA
AACCTTTAACATAACAGAATTCAGCAGGAATGTCATGTCACCTCAGAAGG
ATTGGGAAGTTAAAACGGTGACCGCTAACTATTTGACTCGTTACGAACTA
GTCAGGTCGCAAACattgaaaaactttatttgGAAAGAGATTCCATTGGT
TAGCCCTGAAGCTGTTGGTATCTCCTTCTCTAAGAACCCTTTTGGGAAAG
GAGCAGAGCGTCTTGTCTATCAACTCTGCGAAATCGATAAACGAAAGAGA
AAAGTCGGTCAAAGTTTGGTCATGAAGAATAGCAAATATGAAGGGAATTA
TGATTTCCGAAAATATCACGAACCGTTTTGTAAGACTCAGAAGATTGCTG
CCAACACAGCTTTAAGGTTCAATCAACGTTTAGAAAGAATGCCACAGATC
ACCAGTAAAGTGCCCCGAGTGAAGTTTTTGCAATGTTACGTTTACGCGTT
TTACGATGGTTATGACGAGTTGAATATTTTAGCAGAGCGAGAGATCGATC
ATCATCAATACACCAAATGGAATGATAACACTGGGGGAGTTCTCGGTCAG
CGTCGACAACAAGTCAAAACTATTCATGATCAGATCATCGAGgaggagga
agaagaagaagaagatgataTTTCAGGTGAAGTTGAACCAACAGCTGATT
CTGAAGATGAGGAAAACTTCTATGGTGTTCGTGACTTAACCCAACAACCA
AGAACCGCTGTTCAACAACGACATCAAAGAGTACAGATGGTCGATATCCT
TGATGAAGAAGTCCCACAGGCTTTTACTCATTTCTCTTACACGTGGAGTA
ACAGAGAGAAGATGGTTTGTGATCTACAAGGTGTTTTGAATAAAACTACG
AGAGAATTTGAGTTTACCGATCCTGCTATTCATTACGCGTCCAAAAGTGG
ACGTCGACACGTTTACGGACGTACGGACAAAGGGAAAGATGGAATGCGTG
AATTCTTCAAAACACATAAATGCAACAAACTTTGTGAAGCGTTGGGAATT
TCACAAGAACGCAtgtaaaactttttcaaatagaGAGAAATTCGTAACCA
TAAAGATTTCCTACCATGCACTGTTAAAAGTAACAATAACATTATAATAT
CatatattttgaatttcgaaaagAACGGATTCATCAAACAGCTCTTCGTA
GCCAGGTTTCCGGGATTATTCAGGACCTAATGACTGTATTACTCCATCTT
CAGccaattttattcaattttctgaTTTGTAACgtttattattatatttt
catACTAAATAGTTTACTatttgataattatttttcttcccAAAAAGTAA
AATACTACAAAGTCCTGTATTACCTTGAAGCAAC
Run BLAST on NCBI

protein sequence of TCONS_00050528-protein

>TCONS_00050528-protein ID=TCONS_00050528-protein|Name=TCONS_00050528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=701bp
MTSGTMEESQLRTSTIELISSIHGTQRRAERAIDVKDLKSAIKHGKKEPQ
IRYRNGQKQIRYKYTFADVVYITDEFSRLEITSYVLPLPLDNYHVLDTEE
HQYLAAKRRMTENPGSITSHAVFVVDCSGSMKNSDVVAHRCRLDAVQYGI
AVEFIAKRLHNPSSGVTQLDVVTIIEMRDEAKVVFEKEPVSWVLYNKLVD
HAKHSKPSSHGNYYPALQTARQMLSDGDHPNLALLLFFLSDGRPSDESFN
ISXLLFFLSDGRPSDESFNISISNILCEAQMIGKVFKKRLNFGMVAYGRP
LEDMSVLDQMATWMSMYGAVGKFHRSDLKKVDSLSTSIATMASTLTSTRT
MLTAARTDRMQQKTFNITEFSRNVMSPQKDWEVKTVTANYLTRYELVRSQ
TLKNFIWKEIPLVSPEAVGISFSKNPFGKGAERLVYQLCEIDKRKRKVGQ
SLVMKNSKYEGNYDFRKYHEPFCKTQKIAANTALRFNQRLERMPQITSKV
PRVKFLQCYVYAFYDGYDELNILAEREIDHHQYTKWNDNTGGVLGQRRQQ
VKTIHDQIIEEEEEEEEDDISGEVEPTADSEDEENFYGVRDLTQQPRTAV
QQRHQRVQMVDILDEEVPQAFTHFSYTWSNREKMVCDLQGVLNKTTREFE
FTDPAIHYASKSGRRHVYGRTDKGKDGMREFFKTHKCNKLCEALGISQER
M
Run BLAST on NCBI

transcript from alignment at scaffold_179:428551..435615+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050528 ID=TCONS_00050528|Name=TCONS_00050528|organism=Clytia hemisphaerica|type=transcript|length=7065bp|location=Sequence derived from alignment at scaffold_179:428551..435615+ (Clytia hemisphaerica)
aaaatcGTCTGCTAGTAGTAGCAAATTTGTGTAAGCACAAATTCTACAct ttttgtctgtttttttttaacaaatttaacCGAGACACGCATAGAGGAAG ATATCTTTCGCCATGACTTCGGGTAAGTACTGttgttttaaaatatattc CAATGTGGAAATTCGGAAATTTTGCCAACCTAAggaaaattttatcataa ataGAGTTTTTGTAAATTCAAAAAGTAAGTTAAGGGATTTAATTTCGGCT TCATAGCCAACCTGTTTTTAGGAAATTAAACATCGAGCATTGCCCGAGTT TTGTACTGTATActcaaaatatatatattttttttaattttttttttttt tttttttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNTATGTCTGTTGTTGCTTTGATTCTATATCGtggtctt ttttctttagctcatctttagCGATGCTAGCGTATGTCTGCTGTTGTTTG GATCCTTTAACGAAATAATCTTTGTTTACAAGATCGTCGATCTTCTTCTC CAGTCTATCCAGTCTAGCGAAAACAGATTGCTCATCTTGATCTTTCTCTT TACCTCTAGTATTTGTTGCCTTGTTATTGGtcgttctttgtttacttgtt ttgaaCTTCTCTAATAATATTGGCGTGACCGTGATGCATTTCGCACATTC GAATCTCCTTGCTTTGTACTGAAGGCAAATCTGTACTTGGTAGGCTGGAA GCTCCGAACAGGCATAatgaacaaatctttgacaCTTNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAATATA TAGATTAATTTCTGATTTAACTTTTTCCTCGATAgttttctgtaaaatat ttcttatatttattatttacgATCGGTATGAGCTTACCCATGTTGATTTC ATATGAGATCAAACAATTCATAAAAACATAACAACCCGagggtggggggg gggtcaatCGATTAAAAAAATGACGAGACGtccggcccaaaattaggcct ttgaattagacccttacaatgcagaaaatcttttgcaaaatttgagcaaa aaatctacccttacggtgcattttcttgaaatcttttgaccattttcagg caaaatatggttagattttcgaaattttacacccttagggagtggtcaga aagtatctactaggggggagtggaggatattttgaaaaatcccaaaaaac tttcgcaccccctcccctagcctggaaaaaaatttcgaaccccccctcat aaggcccaatattttttcgcccccccccccctagcctggaaaaaaatttc gaaccccccctcataaggcccaatattttttcgcccccccccccctagcc tggaaaaaaatttcgaaccccccctcataaggcccaatattttttcgccc cccccccccctactagaaaaatttttacgcaaaaaaagaattcctacaga tgcggtacaaagagtattatttgtttgtatgacagttttttatgtcaaaa ttaggTAAGGGAAATAGTTTAGCCCTGTAAAGTTGAGTTTAGTCCATTag gagatctaccattttgattgacgtttacaccacgggattttttccgtcga tttccatggttacgacggaatttctctgaagtaaacaaaagaaaaaNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNAAAacccgtggtgtaaacgtcaat caaaatggtagtgtGATCTCCTAAAGGAATAGTCCAGggttaaaataaga atcaaCGAGTTATTTTCTCTGAGTTTCTCTAAGTTTTGGGAGAAAGTTAC GGCTTATTTTCCCTGATACACAATCTCCCTACATTACAGAGGCATCTCAA TTACTCAAAATATCCTGAggggccaccatggttggccccgAAGGGNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNAACAAATTTAACCGAGGCACGCATAGAGGAAG ATATCTTTCGCCATGACTTCGGGTAAGTACTGttgttttaaaatatattc CAATGTGGAAATTCTGCCCATTTTGCCCACTTTTATCATAAATAGAGTTT TTGTAAATTCAAAAAGTAAGTTCAGGGATTTAATTTCGGCTTCATAGCCA ACCTGTTTTTAGGAAATTTAGCATCGAGTATTGCCCGAGTTTTGTACTGT ATGCTCAAAATATATAGATTAATTTCTGATTTAACTTTTTCCTTGATAgt tttctgtaaaatatttcttatatttattatttacgATCGGTATGAGCTTA CCCATGTTGATTTCTTATGAGATCAAACAATTCATAAAAACATAATAACC CGGGGGTTAAAAAAATGACCAGACGTCCGGCCCAAAACTAGGCCTTTGAA ATTGGACCCTTACAATGCAgaaagttttttgcaaaatttgagcaaaaaat cgacccttacggtgcattttcttgaagtcttttgaccattttcaggcaaa atatgtttagattttctaaattttacacccttagagtgcaaaGTCTTTAT TCTTACATACTTTTAGCAGTTAAGAACGCGGTACCAACATAATAAATCGT TTTAGCATTATTTTATGTAAATCATAACagtgttatttttttatttttta aaggtaCAATGGAGGAAAGCCAGCTTCGCACAAGCACCATTGAACTCATT TCATCAATCCATGGCACCCAAAGACGTGCTGAACGTGCCATAGATGTCAA GGATCTCAAATCAGCAATAAAACACGGCAAAAAGGAGCCTCAAATACGAT ATCGCAATGGTCAGAAACAGATTCGCTATAAATATACGTTTGCTGATGTT GTCTATATCACTGATGAATTCAGTCGACTAGAGATAACAAGTTATGTTTT ACCGCTACCCTTGGATAATTACCACGTCCTGGATACTGAGGAGCATCAAT ACCTTGCTGCAAAGAGGCGAATGACTGAAAACCCCGGCTCTATAACTTCG CATGCTGTATTTGTTGTCGATTGCAGCGGTTCAATGAAGAACAGTGATGT TGTTGCACACCGGTGCCGGCTGGATGCTGTTCAGTACGGCATTGCTGTGG AGTTCATTGCAAAACGTTTGCATAATCCATCATCTGGTGTCACTCAATTA GATGTGGTGACCATAATCGAAATGAGAGATGAAGCCAAAGTTGTGTTCGA AAAAGAACCAGTTAGTTGGGTGTTGTACAATAAATTGGTAGACCATGCAA AGCATAGCAAACCATCTTCACATGGCAATTATTATCCAGCTCTTCAAACC GCACGTCAGATGTTAAGTGATGGTGACCATCCAAATCTAGCCTTATTACT TTTCTTTCTCTCTGATGGCCGACCAAGCGACGAGAGCTTCAATATCAGTA NGttacttttttttctctctGATGGCCGACCAAGCGACGAGAGCTTCAAT ATCAGTATTTCAAATATCTTGTGTGAAGCTCAAATGATTGGCAAAGTCTT CAAAAAGCGATTGAATTTCGGCATGGTTGCATATGGTAGGCCTTTGGAAG ATATGAGTGTGTTGGATCAAATGGCAACATGGATGTCAATGTACGGAGCT GTTGGCAAATTTCATCGCTCTGATCTCAAGAAGGTGGATTCTCTTTCAAC CTCCATTGCAACTATGGCAAGTACATTGACGAGCACCCGTACTATGCTGA CAGCAGCTCGCACAGATCGAATGCAACAGAAAACCTTTAACATAACAGAA TTCAGCAGGAATGTCATGTCACCTCAGAAGGATTGGGAAGTTAAAACGGT GACCGCTAACTATTTGACTCGTTACGAACTAGTCAGGTCGCAAACattga aaaactttatttgGAAAGAGATTCCATTGGTTAGCCCTGAAGCTGTTGGT ATCTCCTTCTCTAAGAACCCTTTTGGGAAAGGAGCAGAGCGTCTTGTCTA TCAACTCTGCGAAATCGATAAACGAAAGAGAAAAGTCGGTCAAAGTTTGG TCATGAAGAATAGCAAATATGAAGGGAATTATGATTTCCGAAAATATCAC GAACCGTTTTGTAAGACTCAGAAGATTGCTGCCAACACAGCTTTAAGGTT CAATCAACGTTTAGAAAGAATGCCACAGATCACCAGTAAAGTGCCCCGAG TGAAGTTTTTGCAATGTTACGTTTACGCGTTTTACGATGGTTATGACGAG TTGAATATTTTAGCAGAGCGAGAGATCGATCATCATCAATACACCAAATG GAATGATAACACTGGGGGAGTTCTCGGTCAGCGTCGACAACAAGTCAAAA CTATTCATGATCAGATCATCGAGgaggaggaagaagaagaagaagatgat aTTTCAGGTGAAGTTGAACCAACAGCTGATTCTGAAGATGAGGAAAACTT CTATGGTGTTCGTGACTTAACCCAACAACCAAGAACCGCTGTTCAACAAC GACATCAAAGAGTACAGATGGTCGATATCCTTGATGAAGAAGTCCCACAG GCTTTTACTCATTTCTCTTACACGTGGAGTAACAGAGAGAAGATGGTTTG TGATCTACAAGGTGTTTTGAATAAAACTACGAGAGAATTTGAGTTTACCG ATCCTGCTATTCATTACGCGTCCAAAAGTGGACGTCGACACGTTTACGGA CGTACGGACAAAGGGAAAGATGGAATGCGTGAATTCTTCAAAACACATAA ATGCAACAAACTTTGTGAAGCGTTGGGAATTTCACAAGAACGCAtgtaaa actttttcaaatagaGAGAAATTCGTAACCATAAAGATTTCCTACCATGC ACTGTTAAAAGTAACAATAACATTATAATATCatatattttgaatttcga aaagAACGGATTCATCAAACAGCTCTTCGTAGCCAGGTTTCCGGGATTAT TCAGGACCTAATGACTGTATTACTCCATCTTCAGccaattttattcaatt ttctgaTTTGTAACgtttattattatattttcatACTAAATAGTTTACTa tttgataattatttttcttcccAAAAAGTAAAATACTACAAAGTCCTGTA TTACCTTGAAGCAAC

Coding sequence (CDS) from alignment at scaffold_179:428551..435615+

>TCONS_00050528 ID=TCONS_00050528|Name=TCONS_00050528|organism=Clytia hemisphaerica|type=CDS|length=4212bp|location=Sequence derived from alignment at scaffold_179:428551..435615+ (Clytia hemisphaerica)
ATGACTTCGGgtaCAATGGAGGAAAGCCAGCTTCGCACAAGCACCATTGA
ACTCATTTCATCAATCCATGGCACCCAAAGACGTGCTGAACGTGCCATAG
ATGTCAAGGATCTCAAATCAGCAATAAAACACGGCAAAAAGGAGCCTCAA
ATACGATATCGCAATGGTCAGAAACAGATTCGCTATAAATATACGTTTGC
TGATGTTGTCTATATCACTGATGAATTCAGTCGACTAGAGATAACAAGTT
ATGTTTTACCGCTACCCTTGGATAATTACCACGTCCTGGATACTGAGGAG
CATCAATACCTTGCTGCAAAGAGGCGAATGACTGAAAACCCCGGCTCTAT
AACTTCGCATGCTGTATTTGTTGTCGATTGCAGCGGTTCAATGAAGAACA
GTGATGTTGTTGCACACCGGTGCCGGCTGGATGCTGTTCAGTACGGCATT
GCTGTGGAGTTCATTGCAAAACGTTTGCATAATCCATCATCTGGTGTCAC
TCAATTAGATGTGGTGACCATAATCGAAATGAGAGATGAAGCCAAAGTTG
TGTTCGAAAAAGAACCAGTTAGTTGGGTGTTGTACAATAAATTGGTAGAC
CATGCAAAGCATAGCAAACCATCTTCACATGGCAATTATTATCCAGCTCT
TCAAACCGCACGTCAGATGTTAAGTGATGGTGACCATCCAAATCTAGCCT
TATTACTTTTCTTTCTCTCTGATGGCCGACCAAGCGACGAGAGCTTCAAT
ATCAGTANGttacttttttttctctctGATGGCCGACCAAGCGACGAGAG
CTTCAATATCAGTATTTCAAATATCTTGTGTGAAGCTCAAATGATTGGCA
AAGTCTTCAAAAAGCGATTGAATTTCGGCATGGTTGCATATGGTAGGCCT
TTGGAAGATATGAGTGTGTTGGATCAAATGGCAACATGGATGTCAATGTA
CGGAGCTGTTGGCAAATTTCATCGCTCTGATCTCAAGAAGGTGGATTCTC
TTTCAACCTCCATTGCAACTATGGCAAGTACATTGACGAGCACCCGTACT
ATGCTGACAGCAGCTCGCACAGATCGAATGCAACAGAAAACCTTTAACAT
AACAGAATTCAGCAGGAATGTCATGTCACCTCAGAAGGATTGGGAAGTTA
AAACGGTGACCGCTAACTATTTGACTCGTTACGAACTAGTCAGGTCGCAA
ACattgaaaaactttatttgGAAAGAGATTCCATTGGTTAGCCCTGAAGC
TGTTGGTATCTCCTTCTCTAAGAACCCTTTTGGGAAAGGAGCAGAGCGTC
TTGTCTATCAACTCTGCGAAATCGATAAACGAAAGAGAAAAGTCGGTCAA
AGTTTGGTCATGAAGAATAGCAAATATGAAGGGAATTATGATTTCCGAAA
ATATCACGAACCGTTTTGTAAGACTCAGAAGATTGCTGCCAACACAGCTT
TAAGGTTCAATCAACGTTTAGAAAGAATGCCACAGATCACCAGTAAAGTG
CCCCGAGTGAAGTTTTTGCAATGTTACGTTTACGCGTTTTACGATGGTTA
TGACGAGTTGAATATTTTAGCAGAGCGAGAGATCGATCATCATCAATACA
CCAAATGGAATGATAACACTGGGGGAGTTCTCGGTCAGCGTCGACAACAA
GTCAAAACTATTCATGATCAGATCATCGAGgaggaggaagaagaagaaga
agatgataTTTCAGGTGAAGTTGAACCAACAGCTGATTCTGAAGATGAGG
AAAACTTCTATGGTGTTCGTGACTTAACCCAACAACCAAGAACCGCTGTT
CAACAACGACATCAAAGAGTACAGATGGTCGATATCCTTGATGAAGAAGT
CCCACAGGCTTTTACTCATTTCTCTTACACGTGGAGTAACAGAGAGAAGA
TGGTTTGTGATCTACAAGGTGTTTTGAATAAAACTACGAGAGAATTTGAG
TTTACCGATCCTGCTATTCATTACGCGTCCAAAAGTGGACGTCGACACGT
TTACGGACGTACGGACAAAGGGAAAGATGGAATGCGTGAATTCTTCAAAA
CACATAAATGCAACAAACTTTGTGAAGCGTTGGGAATTTCACAAGAACGC
AtgtaaATGACTTCGGgtaCAATGGAGGAAAGCCAGCTTCGCACAAGCAC
CATTGAACTCATTTCATCAATCCATGGCACCCAAAGACGTGCTGAACGTG
CCATAGATGTCAAGGATCTCAAATCAGCAATAAAACACGGCAAAAAGGAG
CCTCAAATACGATATCGCAATGGTCAGAAACAGATTCGCTATAAATATAC
GTTTGCTGATGTTGTCTATATCACTGATGAATTCAGTCGACTAGAGATAA
CAAGTTATGTTTTACCGCTACCCTTGGATAATTACCACGTCCTGGATACT
GAGGAGCATCAATACCTTGCTGCAAAGAGGCGAATGACTGAAAACCCCGG
CTCTATAACTTCGCATGCTGTATTTGTTGTCGATTGCAGCGGTTCAATGA
AGAACAGTGATGTTGTTGCACACCGGTGCCGGCTGGATGCTGTTCAGTAC
GGCATTGCTGTGGAGTTCATTGCAAAACGTTTGCATAATCCATCATCTGG
TGTCACTCAATTAGATGTGGTGACCATAATCGAAATGAGAGATGAAGCCA
AAGTTGTGTTCGAAAAAGAACCAGTTAGTTGGGTGTTGTACAATAAATTG
GTAGACCATGCAAAGCATAGCAAACCATCTTCACATGGCAATTATTATCC
AGCTCTTCAAACCGCACGTCAGATGTTAAGTGATGGTGACCATCCAAATC
TAGCCTTATTACTTTTCTTTCTCTCTGATGGCCGACCAAGCGACGAGAGC
TTCAATATCAGTANGttacttttttttctctctGATGGCCGACCAAGCGA
CGAGAGCTTCAATATCAGTATTTCAAATATCTTGTGTGAAGCTCAAATGA
TTGGCAAAGTCTTCAAAAAGCGATTGAATTTCGGCATGGTTGCATATGGT
AGGCCTTTGGAAGATATGAGTGTGTTGGATCAAATGGCAACATGGATGTC
AATGTACGGAGCTGTTGGCAAATTTCATCGCTCTGATCTCAAGAAGGTGG
ATTCTCTTTCAACCTCCATTGCAACTATGGCAAGTACATTGACGAGCACC
CGTACTATGCTGACAGCAGCTCGCACAGATCGAATGCAACAGAAAACCTT
TAACATAACAGAATTCAGCAGGAATGTCATGTCACCTCAGAAGGATTGGG
AAGTTAAAACGGTGACCGCTAACTATTTGACTCGTTACGAACTAGTCAGG
TCGCAAACattgaaaaactttatttgGAAAGAGATTCCATTGGTTAGCCC
TGAAGCTGTTGGTATCTCCTTCTCTAAGAACCCTTTTGGGAAAGGAGCAG
AGCGTCTTGTCTATCAACTCTGCGAAATCGATAAACGAAAGAGAAAAGTC
GGTCAAAGTTTGGTCATGAAGAATAGCAAATATGAAGGGAATTATGATTT
CCGAAAATATCACGAACCGTTTTGTAAGACTCAGAAGATTGCTGCCAACA
CAGCTTTAAGGTTCAATCAACGTTTAGAAAGAATGCCACAGATCACCAGT
AAAGTGCCCCGAGTGAAGTTTTTGCAATGTTACGTTTACGCGTTTTACGA
TGGTTATGACGAGTTGAATATTTTAGCAGAGCGAGAGATCGATCATCATC
AATACACCAAATGGAATGATAACACTGGGGGAGTTCTCGGTCAGCGTCGA
CAACAAGTCAAAACTATTCATGATCAGATCATCGAGgaggaggaagaaga
agaagaagatgataTTTCAGGTGAAGTTGAACCAACAGCTGATTCTGAAG
ATGAGGAAAACTTCTATGGTGTTCGTGACTTAACCCAACAACCAAGAACC
GCTGTTCAACAACGACATCAAAGAGTACAGATGGTCGATATCCTTGATGA
AGAAGTCCCACAGGCTTTTACTCATTTCTCTTACACGTGGAGTAACAGAG
AGAAGATGGTTTGTGATCTACAAGGTGTTTTGAATAAAACTACGAGAGAA
TTTGAGTTTACCGATCCTGCTATTCATTACGCGTCCAAAAGTGGACGTCG
ACACGTTTACGGACGTACGGACAAAGGGAAAGATGGAATGCGTGAATTCT
TCAAAACACATAAATGCAACAAACTTTGTGAAGCGTTGGGAATTTCACAA
GAACGCAtgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031999XLOC_031999Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050528-proteinTCONS_00050528-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050528-exon-scaffold_179-1491911889:428551..428672TCONS_00050528-exon-scaffold_179-1491911889:428551..428672Clytia hemisphaericaexon
TCONS_00050528-exon-scaffold_179-1510915933:428551..428672TCONS_00050528-exon-scaffold_179-1510915933:428551..428672Clytia hemisphaericaexon
TCONS_00050528-exon-scaffold_179-1575043694:428551..428672TCONS_00050528-exon-scaffold_179-1575043694:428551..428672Clytia hemisphaericaexon
TCONS_00050528-exon-scaffold_179-1491911889:433204..435615TCONS_00050528-exon-scaffold_179-1491911889:433204..435615Clytia hemisphaericaexon
TCONS_00050528-exon-scaffold_179-1510915933:433204..435615TCONS_00050528-exon-scaffold_179-1510915933:433204..435615Clytia hemisphaericaexon
TCONS_00050528-exon-scaffold_179-1575043694:433204..435615TCONS_00050528-exon-scaffold_179-1575043694:433204..435615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:428551..435615 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.588081 0 0.439653 5.98952 0 1.0424 1.53165 1.08105 1.12867 1.78809 0.391662 0.401441 2.36145 1.3991 0 0.738144 1.19641 1.08771 5.04144 5.99927 3.17365 2.72223 0 0.589992
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004166MHCK_EF2_kinase
IPR002035VWF_A
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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