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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050526 ID=TCONS_00050526|Name=TCONS_00050526|organism=Clytia hemisphaerica|type=transcript|length=3655bp
atttttatttcattttagcaATGAAGCTGCGTTAAAATTTATCGGTGTAA
AACCTTTTACCATCAAATGGCATCCATTTCCAATGATGTACATTGTCAAG
AGAAACTTTCCAACCTGTACAAAATGTTGTCACATTTGCATGGTCCATCA
AGTCAAcacattgctatcaataataaACTAGTATGCTCTGCATTTGAGCT
GTATCATTCTATTACTCCAacggatgacgtcatcaatcttaTGTTTGGTT
TCCTACGACAGCAAAATGAACGTTACAAAAATGGTGGATCAGCTATGGGA
ATTTTAGCGACAATTCTTATTCAAGAATACTTGAAATTTGATGTCCCCAT
TGGAACTGTAATGGATAACAACGAGTTGATTTTGAGTACTTGTGTTAGAG
AAATTCGGACACTTTCGGTCAAATGTAATATCGGACGGTTTAGTGATGTC
ACAAAAATAATTCGTCCAATCTTGATGTCTAAACTGTTGCTTACACGAGA
AGAATCTAAACATTTATGTTTGACATTTGCACGTGTTTTTACTATGGACA
ATTTCTGGAACAATAGTCACGTGATTAAACTTGAAAACGAGGCTATTTTA
AAAACGAGCCTTAATGATGGTTTAATGTTGCGTCTGGAACAATATACGAA
TTTCCCAAATGAACTCACTGATGTGAAGGTTATTCTTTATTCTGTCTCGA
TTGCCCTTGATAGTGAAGAAGTTTTGGAAGGAGGGTCAAAGTTTGATTAT
CAAGTTGAATCAAGAAGTGATTTAAAGGAAAGTTTACTAAATGGAAATGT
ATTGAGGACTTGCCGCTTAATGCATGGTTTAGTGCAACTAATTGTTTGTC
AAAAAGTGATACACCCAAGAGCTAAGAAATGGTTCAAAGACAATGCTATT
TACTGTATTGATCGAGTTGGCAAAGCTTGTATGAAAAAACTGGAGACAAT
CTGTCAGTGCATTGCTGTTAATAATCTTTCAGAAACTGACCTTTCATCTT
ATTTGGGACACATTTCTTTAGCAAAGCGTGTTAATCTGATTGAAAAGAAC
TTTCTTAGGTTGGAAAATGTGAACGTACCGCAAATAAAGACAGTTATTTT
ATGTGCTGAAGACGAAATTCGCTTGAACGCTTTAGATATTTGTTATGAAC
AAACCTTGACAGCCTTGGATACGGTTTCTAAAACGGAAAACGTTTTATAC
GGAGGAGGATGCTCCATAACTCGACTCCTTATGAAGATGGTGAAGGAGCA
CGGCACCATGACACATTTTCGTGTTTATGTTACATCGTTATTAAAGCTGT
GTCAAGCTGTATCAAGAACAGATACtctccatcattgcattgacttaACC
TTCCATCATCATTGGATAACTGGTTCTCCAACCTGTTGTTGTGGAATTGT
CAAGAAAAGCTCTACGATGGAGTTTGTCAATTTTCTTGAGCTTAACAATA
ATTCTTATCTTACAAATTACAAACCTAGTGATGTACAAGAAGATTTTTAT
GGACGTGAAGCAGATGTTTTTGAGTCAGAAGAAATGTTCATTCATATCAT
CTCTTCTGCTTTTCAATTAGCTAATATGGTTTTAAGAATCGGTGCAAAAG
TGGTTTCTAAGCCTCCCACTACCTAAttagtattttctttttcttttttt
catattcaagtAAATCTCTTGTACTGTACTTGATTGTGAGTAGCTTTCCT
AGTATTATTTGCTTTCATCTTCCAAAAAAGAGCTTTAATGTTAATCGTTT
CCAAGGCCAACCCTAAAGATAAAATGATAATTTCATTTGTTGTTTTGAAG
TTTCTTCTCGACATAAATGCTTGACCTCCACTACATTGAACTATATCGTT
CTTTAAAGATTTCGTCGTGTGAATGGGAAAAGTTTCATTTCGCAAAACAG
CTTCTCAGCAAAACTATCTGTACTTTTTGCAAGAATACCAACAACAGAAC
GTATTGTCTCTACGAACAAGAACTCAGgtGACTCAAGGTGCCCAAAAAGT
AAGCAAGGAAGGAAAAGAGTCACGTCAAGTCCTTCCAAGCCTTCGGAACA
AGATAAGCTTTGCTTAAAAGAAGTAAAGAAGGAAGACAACGTAAATATTG
AAGCAGTTTGACTTGACATTAAAACCAATTCATTCAACGTCTCAAGAGAG
TCAAAATGCCGAACAAATGCTTATCGTTGCTACCAGTTTCGGCCGCTTTC
GTTTTGTTAGCAGCAGCTGTATCAAGCTACCTCTTGGGATTGCTGCACAA
AGGTACTTTAGAGTATGTCCCATACCCAAGTGATTTAGGTTTACAACAAC
CTGAGCTTGGTATATTTTCAACTGGGATTGCGTTTAGTGGTTCAATCACT
TTCGCTGTCATCCTGTTACGTTTTATCCAAGTTAACACGTTTTATCCAAT
GGTGTGTTATAAAGCCAATTACATATCTTTCTTATCTGGTATGTTGATGC
TGATTGGTTTATACATGGTACCAGCTTTCCCGTACGATACACATGCTTTC
CTTCACTACATCGGTGCcggaattttcttctttttcatgattCTCTTCAT
GATTACCCAAGCAAGGATCACCCACAAGCATCCGTATAATCACACTAAAT
GCTTAGCGAGTTTCCGAATCCTTCTCTGTGTTTTCGCCTGTGCAACACCG
GTTACATTTGTCTGCGGACGTCTACTTGCTCCTAAAGAGGAACGTTATTA
TTATATCCCACAAGGCTGTGAATGGTTCCAATGTTTACTTTACTTAATCT
ACATGTGCACCTTCGCATGGGATTTTGGTCGTATCCATCTACGTCTAAAC
AGCTACGAGGTTTGCCCGCGAAGTCCAGATACTCGAAAGTTGACCCGCAG
GCCGTTAGATGCTCATAGTACAATGTAAAAGACGAAATGGAAGATTCATA
CATGCGGTGAATTGTTTGGAATTTATACTGCTTCCCAAgtcttggtcttg
tctctgtTCGCAAATATTGTAAAAGACAAGACTCGCAGCATAATGGATTT
TAATGGAAAATTTGGTGTAATTCACACTTTTATTATGGATGATATCGTTa
aacgattttgatttttttttaagaaaatggaaatttcaaaGAACGTTCCA
AAGCAATGGACAGTGCATCGTGTGCCCATCTAGGAAACCATTGAATTTTG
AATCGTTGGCAAACGAACGTATTTAAAACACCCTGTCTCAACGGTTGCAC
GGGGCTATGACAGTATGTGATATGACAgcacaataattttttttgatcgg
AACTTAAACACCTCTTGTGCTATTTTAGGACGTCCTTCTGTTGTTCAGAT
GGCTATTTTCATCCTTTTGCAGGTTTTTCCATCTCCAAAAGTCTTGATAA
TAAGTCCCTCGCTTAATTCCAATTTGTACCGACCCCCTGTTCGTTTATTA
GACACCTAGAGACCTGATGAAAGTGCCTTAATTTCCTATGTATAAGCGCG
TTTATAAGTATGCCTTGCTCACACTTTATTCAAGTATTTATAGTTATATT
ATAAAATTTAGGTATTTTCTTTTTAGAGggttttaatatctttttagagg
CATTAATAGCATTTACTTAACATATTTATCTTACTCTTCATATTTATCGG
CGTGGATATTTTATTCGGTTTTCGAATGATCGATAAAAACATCATTCTCT
CTTAT Run BLAST on NCBI transcript from alignment at scaffold_179:404021..414204+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050526 ID=TCONS_00050526|Name=TCONS_00050526|organism=Clytia hemisphaerica|type=transcript|length=10184bp|location=Sequence derived from alignment at scaffold_179:404021..414204+ (Clytia hemisphaerica)
atttttatttcattttagcaATGAAGCTGCGTTAAAATTTATCGGTGTAA
AACCTTTTACCATCAAATGGCATCCATTTCCAATGATGTACATTGTCAAG
AGAAACTTTCCAACCTGTACAAAATGTTGTCACATTTGCATGGTCCATCA
AGTCAAcacattgctatcaataataaACTAGTATGCTCTGCATTTGAGCT
GTATCATTCTATTACTCCAacggatgacgtcatcaatcttaTGTTTGGTT
TCCTACGACAGCAAAATGAACGTTACAAAAATGGTGGATCAGCTATGGGA
ATTTTAGCGACAATTCTTATTCAAGAATACTTGAAATTTGATGTCCCCAT
TGGAACTGTAATGGATAACAACGAGTTGATTTTGAGTACTTGTGTTAGAG
AAATTCGGACACTTTCGGTCAAATGTAATATCGGACGGTTTAGTGATGTC
ACAAAAATAATTCGTCCAATCTTGATGTCTAAACTGTTGCTTACACGAGA
AGAATCTAAACATTTATGTTTGACATTTGCACGTGTTTTTACTATGGACA
ATTTCTGGAACAATAGTCACGTGATTAAACTTGAAAACGAGGCTATTTTA
AAAACGAGCCTTAATGATGGTTTAATGTTGCGTCTGGAACAATATACGAA
TTTCCCAAATGAACTCACTGATGTGAAGGTTATTCTTTATTCTGTCTCGA
TTGCCCTTGATAGTGAAGAAGTTTTGGAAGGAGGGTCAAAGTTTGATTAT
CAAGTTGAATCAAGAAGTGATTTAAAGGAAAGTTTACTAAATGGAAATGT
ATTGAGGACTTGCCGCTTAATGCATGGTTTAGTGCAACTAATTGTTTGTC
AAAAAGTGATACACCCAAGAGCTAAGAAATGGTTCAAAGACAATGCTATT
TACTGTATTGATCGAGTTGGCAAAGCTTGTATGAAAAAACTGGAGACAAT
CTGTCAGTGCATTGCTGTTAATAATCTTTCAGAAACTGACCTTTCATCTT
ATTTGGGACACATTTCTTTAGCAAAGCGTGTTAATCTGATTGAAAAGAAC
TTTCTTAGGTTGGAAAATGTGAACGTACCGCAAATAAAGACAGTTATTTT
ATGTGCTGAAGACGAAATTCGCTTGAACGCTTTAGATATTTGTTATGAAC
AAACCTTGACAGCCTTGGATACGGTTTCTAAAACGGAAAACGTTTTATAC
GGAGGAGGATGCTCCATAACTCGACTCCTTATGAAGATGGTGAAGGAGCA
CGGCACCATGACACATTTTCGTGTTTATGTTACATCGTTATTAAAGCTGT
GTCAAGCTGTATCAAGAACAGATACtctccatcattgcattgacttaACC
TTCCATCATCATTGGATAACTGGTTCTCCAACCTGTTGTTGTGGAATTGT
CAAGAAAAGCTCTACGATGGAGTTTGTCAATTTTCTTGAGCTTAACAATA
ATTCTTATCTTACAAATTACAAACCTAGTGATGTACAAGAAGATTTTTAT
GGACGTGAAGCAGATGTTTTTGAGTCAGAAGAAATGTTCATTCATATCAT
CTCTTCTGCTTTTCAATTAGCTAATATGGTTTTAAGAATCGGTGCAAAAG
TGGTTTCTAAGCCTCCCACTACCTAAttagtattttctttttcttttttt
catattcaagtAAATCTCTTGTACTGTACTTGATTGTGAGTAGCTTTCCT
AGTATTATTTGCTTTCATCTTCCAAAAAAGAGCTTTAATGTTAATCGTTT
CCAAGGCCAACCCTAAAGATAAAATGATAATTTCATTTGTTGTTTTGAAG
TTTCTTCTCGACATAAATGCTTGACCTCCACTACATTGAACTATATCGTT
CTTTAAAGGTTTGTAGAATATAAAAACTTACTGCAAATATTTAGCAAGAA
AAtgagaaatttgttttgtttggaGTTTCTTACAGTTATCTTTATCGTTA
ACTCAAaatctaaacgtttttttaataagaacatttttgaagccttcgga
tgttcttatctTTTTGATTTAGCCTAAAAaggttcttaacatgttcttat
tttcgccattttttgagtatttttgtccattttctgaagaaatcgggtgt
tttagagtccgtgatattcttaacattttggccatcgaagccttatgttc
ttatatagtttgttcttataaaaaaacgtgtaccacaCCTTTCTTGTCTT
AGGTTTATTATCTTTACGTGACTTAAGAAACATTATATTTCAACAGACTT
AGTCTGATACATTATATTTCAacagtttttcagaaaaatattaccTTTGT
GATTATGAGGTGTCGatgaaatgccattttttaataTCTACCTGCTCgtg
aaattttatgaaagatTTTGGTCGAAAGTAGTTCATGCTCAATAATGTTA
GGTTGTTTTCTCGTTACCGTGAAAGCTGTTGAAGTTGAGCTCAAATTCTT
TCAAACTGAATTCTTTTCTAGTAGGGTAGTTAGTGCTTACTTTTTTGCAA
ATATCGTCTGTACTTGCTTATTCCTCCCGGGtccctaatagccgcccccc
cccccgctaattaatttttcgaaaattttcccccccggacatttttttcc
cccccccccccccccgctaattaatttttcgaaaattttcccccccggac
atttttttcccccccccccccccccgctaattaatttttcgaaaattttc
ccccccggacatttttttcccccccccccccccccgctaattaatttttc
gaaaattttcccccccggacatttttttcccccccccccccccccgctaa
ttaatttttcgaaaattttcccccccggacatttttttcccccccccccc
cccccgctaattaatttttcgaaaattttcccccccggacatttttttcc
cccccccccccccccgctaattaatttttcgaaaattttcccccccggac
atttttttcccccccccccccccccgctaattaatttttcgaaaattttc
ccccccggacatttttttcccccccccccccccccgctaattaatttttc
gaaaattttcccccccggacatttttttcccccccccccccccccgctaa
ttaatttttcgaaaattttcccccccggacatttttttcccccccccccc
cccccgctaattaatttttcgaaaattttcccccccggacatttttttcc
cccccccccccccccgctaattaatttttcgaaaattttcccccccggac
atttttttcccccccccccccccccgctaattaatttttcgaaaattttc
ccccccggacatttttttcccccccccccccccccgctaattaatttttc
gaaaattttcccccccggacatttttttcccccccccccccccccgctaa
ttaatttttcgaaaattttcccccccggacatttttttcccccccccccc
cccccgctaattaatttttcgaaaattttcccccccggacatttttttcc
cccccccccccccccgctaattaatttttcgaaaattttcccccccggac
atttttttcccccccccccccccccgctaattaatttttcgaaaattttc
ccccccggacatttttttcccccccccccccccccgctaattaatttttc
gaaaattttcccccccggacatttttttcccccccccccccccccgctta
ttaagttttgagattttttccaacccccctgcttattccaacccccttgg
ctattaggtacccgagagtaaaaaTTAGAATTTGAACATTCAAAATCTAA
CAATCTCATTTTTAAGATTTGCTAGCAAGCTTTGTACGAAAATCAATCGA
TGATGCTAATCTGAAGGCTACTCAGAAAATAtgagattaaaatatattgt
taTCATTGCAAGTCGTTAAGATGATGTAATCTATTGTCAAGTTTTGAATT
TGATAATCGATACTTTACCATCCCAACACCATATGACATTTTTATaagct
ttttttttatttccacaAATACTCTATCAAAAAGAATAATATTGTACTGA
AAAAAAGATCAACACGAATTTTGAGTAACCTTTTCTAGATTGTGACGGAC
AGAGACTTGTTTTTTTGACGATTTGACTATTTCTAATTCGTTTTAGGTCA
AACCTTCATTCAGATGACTCGATACACGAAATCTTTTTTGCACAATTTTC
AcataatgatattttttgtcCTTCTTTATTAGGGTTGATCTTACATAACG
TTTCAGAAGTAGCAACAAATCTTTTCAAGGTACAGTATGAtccattacac
gtttttttataagaacatctacaatttttgaagcctttggatgttcttat
tttcaccattttgtgaccatttttaaaatttttttgagtccacaaagcct
taaaatgttcttaacaagtCTTTTGtgcttatatagtttgttcccataaa
aaaaacgtgtaatgacCGTTACTTTAGCACTTATCGCATTTGGGACAAGG
GTCCTTTCATATTCCAATATTCTGATATTTTTGTTGGCTTCAGTTTTTAA
GAGGcaagaaaataaattgtttattcttggtgTGTGTAAAGTCTAGAGTC
TAAGACagaaagtacacgtttttttataagaacaaactatataggaacat
aaggcttcgatggccaatatgttaagaacaagttaagaacattttaagac
tttgaggactctaaaatacccaatttcttagaaaaacggacaaaagtact
caaaaaatggcgaaaataagagcatgttaagaataatttttagacttgaa
acccaaaaagttaagaacatctcaaggcttcaaaatttttagatgctCTT
AtacaaaaacgtgtattcagAGTCATCTTGATGTGTTGATAGGGATTAGT
AATCTGTGTGACTATCCAGTATTTTATCACGAGGGACATACtactcaaaa
attgttttttaattcgGAAATTGATTTGTTTGAATTATCAAAAATACCTT
GACAATGTAAAGGTAAATAGGATTATACTCATTAAACCAAATTTCTTCAA
AACTCTCAGTAGAGTATTAATCAATTTCTATGTCTTTATCATTTTAAGAG
AGTCATGTAGTTTATGTTGTTTTAATTTGATTCATTATAGATTTCGTCGT
GTGAATGGGAAAAGTTTCATTTCGCAAAACAGCTTCTCAGCAAAACTATC
TGTACTTTTTGCAAGAATACCAACAACAGAACGTATTGTCTCTACGAACA
AGAACTCAGGTAAACACATCATGATTTTATGTtacgtctttttataagaa
caaactatataagaataagGCTTCataaccaaaatgttaagaaggATTTG
TAAACTCTAAAACagccgatttcttagaaaactAGACAAAAATACCCAGA
AAATTGAATGCTTAGAATAAGAACTTGgtaagaacacttttaggcttagg
tttaaaactcaaaaaagttaagagcattcgaaggcttcaaatatttttga
tgttcttattaaaaaaacgtgtacagtatTATGTAAAAGTAAACTTTTTC
TCCTTCCCATAAAATATTACCATGTATTAAAACTGCTTTCATTAGTTTGC
TACTGGTGCTGATtcttttgtatgtatttttgaattttttaaggaCCTAA
CCCTCGCAATCCTTGGTACAGTCCTAGACTAGAATTATAGGCTTTTTTta
ctaaaaagttttgtttttaaataagagtgatatcaattttaatttacaag
ctttttcgcattgaattgacacggatgtggagcaagactggtcagaaaga
ggaaaagaaaaacatttttgcttatGGTATCAACAGATATCAAcccaata
cacgctttttcttttataagagtgtactttggatgagggtcaagtattct
taagaaagtgccaaaattgagggtgaaatgttcttaacgtattcttactt
ttttgagACTTGCCTTTTTCACAAACATGAGattgatcaatttgagagtt
ttggacttttgagtgaaaatttgggttaaaattacatttcttcctcaaag
cttcaatttatctctaacaaaggaagcagtttgactgtattcttatcaaa
ttctgtgaaattcacctcagaaaaaaagcgtaaaaaagaaaagtcctgat
atgaaacatgtgtctgatatactgatatgaaacggggacACTTTAGTAAA
TATGAAACCTTTAGGAAATTTTGTAGTAAAGAAGTTACATTGAATTGGAA
TGTTACTGCTGCGTGTTTAGTCAACGATTAGCCATCTGTCAACGATTATA
CAAACCCCGGGAgggaggggggtacttaggcaaaaatggatgatgggtat
gtgcggacggtaagggtcggttttttcacctttcaaagtctctctaaggg
tcggaaaaatcaggaTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACCCTAGAgagtattcttagggtatttttatgattt
ggccaattttcatcctgatattcttatagaagatattcttataaaaaaag
cgtgtataataATAAGTAGActctgtcctgatatgaaacatgtgtctgat
atgagacGGGAACACTTTTGTAAATATGAAACAGGTGAAACCTTTAAGAA
ATTTTGTAGTAAAGAAGTTACATTGAATTGGAATGTTACTGCTGCGTGTT
TAGTCTCTGGTACATGAATTTGTTCAGGTTTTCTAGCTATTGAACTGATA
TTTTGGAAGACATTAAAAACGTAATCAGCATAGCTTTGAATGGATTTTGA
AAGCCTTTAGTTGTTACAACAATATTAGAGACCACTTTCGAAAGTCTACG
ACTGCTACAAACCCCCATTTGTCAACAATTATACAAACCAAGCCCCATTC
AAAAGCTCATCCCTTGAAGTGCATATATTTtgatattggaagtttatcgt
ggcttggatcacaagatttacgtttggctacgtttcgagagattcttttC
CCATAATCAGGCAAGGTGGAGGGTGTTTTCTTCTCTATTATGGGAGAaaa
atctctcgaaacgtagccaaccTTTAAATCTTGTAATCCAAGctacgata
aacttccaatatcaAAATATATAAGCTTCAAGGGACGAGCTTTTGAATGG
GGTTTGGTTTGTATAATCGTTGACGAATGGGGGTTTAAATCACCGGATCG
ATAAACTCAAACTTATTTAGCTTACATTTTGATAAAGGGGTCATCTTCTA
TTACACTGGAGAGTGTAActaatttttctctaaaaattaaGGCACAATAA
GAGCAATTTAAAagccgagcctcaacaaaaatttactagTTCTTATGAAG
AAAGGTCTGTATAATACACCCCCTTcccacagacccggtaggactttttc
agccagtgtggataaaaacaacagaaagaaactcgatattttttatagct
GGGGACTTCAATTCATTATGTTTTCAAGTAGGTagaaaattcaatgggga
tggCAAAAATAGTAaattattttgcagtgaggattggttaatttgattat
tttcagtggggcaaaaattggaggatgattttccaccggggacgatattt
ttagggaaggggtcccagtgggtctgtgagcaGGTGGTGTTATAATATTA
TATtgctcttcttcattttcaggtGACTCAAGGTGCCCAAAAAGTAAGCA
AGGAAGGAAAAGAGTCACGTCAAGTCCTTGTGAGTATAGTCCTTTGCTAC
TTTGAGTACATTATTgagcaaagaaaaaaatcaattatttaaTCTTGAGC
GctgaatatttctttttatacTTCTCGCTGTGGTAACTGTTCCCGCGCAA
CAAGATGGTACTGTTCCATTGAATAAAATCATTCTGAGAATAAATTGGCC
AAACATTTTACTACCGATAAGGATCTTTTCTTTTAGAAGgcttataagaa
caagctagaaaaattgaattttcagaaaactTGACTTCTAAAGGCTTCCT
CGACAGTACAGAAACAAATTTACCCTTATTTCACTTAGATTGATTTCTGA
AACGACAGGATCAACTGAATAGAAAAGTTTGAAGCATATTGCTCCCTAGT
TCAAGAGTTCTTTCAAGATAGCTTTGTTATACCATCTCGTGTGTTTTTGC
TTGTAACACGTACGAGAAAAGAGTCTTGTGGCGAATGTACTAGTGTACTA
TTGATATATTATTTTCACCACGCACAGTTTcttaataaaaaatttattat
tagTTATTATTACAAGGTTACTCTGATCAACGAAATGAAAATCGCTGTAC
ccttttttaataactttttcccTCTTTTCTTAACACGAAATAGATGTTTC
CCCATATCTTTCTCTCTGTAAAAAAATGacgtattttttttctttctttc
tcatttcTTAAAGCCAAGCCTTCGGAACAAGATAAGCTTTGCTTAAAAGA
AGTAAAGAAGGAAGACAACGTAAATATTGAAGCAGTTTGACTTGACATTA
AAACCAATTCATTCAACGTCTCAAGAGAGTCAAAATGCCGAACAAATGCT
TATCGTTGCTACCAGTTTCGGCCGCTTTCGTTTTGTTAGCAGCAGCTGTA
TCAAGCTACCTCTTGGGATTGCTGCACAAAGGTACTTTAGAGTATGTCCC
ATACCCAAGTGATTTAGGTTTACAACAACCTGAGCTTGGTATATTTTCAA
CTGGGATTGCGTTTAGTGGTTCAATCACTTTCGCTGTCATCCTGTTACGT
TTTATCCAAGTTAACACGTTTTATCCAATGGTGTGTTATAAAGCCAATTA
CATATCTTTCTTATCTGGTATGTTGATGCTGATTGGTTTATACATGGTAC
CAGCTTTCCCGTACGATACACATGCTTTCCTTCACTACATCGGTGCcgga
attttcttctttttcatgattCTCTTCATGATTACCCAAGCAAGGATCAC
CCACAAGCATCCGTATAATCACACTAAATGCTTAGCGAGTTTCCGAATCC
TTCTCTGTGTTTTCGCCTGTGCAACACCGGTTACATTTGTCTGCGGACGT
CTACTTGCTCCTAAAGAGGAACGTTATTATTATATCCCACAAGGCTGTGA
ATGGTTCCAATGTTTACTTTACTTAATCTACATGTGCACCTTCGCATGGG
ATTTTGGTCGTATCCATCTACGTCTAAACAGCTACGAGGTTTGCCCGCGA
AGTCCAGATACTCGAAAGTTGACCCGCAGGCCGTTAGATGCTCATAGTAC
AATGTAAAAGACGAAATGGAAGATTCATACATGCGGTGAATTGTTTGGAA
TTTATACTGCTTCCCAAgtcttggtcttgtctctgtTCGCAAATATTGTA
AAAGACAAGACTCGCAGCATAATGGATTTTAATGGAAAATTTGGTGTAAT
TCACACTTTTATTATGGATGATATCGTTaaacgattttgattttttttta
agaaaatggaaatttcaaaGAACGTTCCAAAGCAATGGACAGTGCATCGT
GTGCCCATCTAGGAAACCATTGAATTTTGAATCGTTGGCAAACGAACGTA
TTTAAAACACCCTGTCTCAACGGTTGCACGGGGCTATGACAGTATGTGAT
ATGACAgcacaataattttttttgatcggAACTTAAACACCTCTTGTGCT
ATTTTAGGACGTCCTTCTGTTGTTCAGATGGCTATTTTCATCCTTTTGCA
GGTTTTTCCATCTCCAAAAGTCTTGATAATAAGTCCCTCGCTTAATTCCA
ATTTGTACCGACCCCCTGTTCGTTTATTAGACACCTAGAGACCTGATGAA
AGTGCCTTAATTTCCTATGTATAAGCGCGTTTATAAGTATGCCTTGCTCA
CACTTTATTCAAGTATTTATAGTTATATTATAAAATTTAGGTATTTTCTT
TTTAGAGggttttaatatctttttagaggCATTAATAGCATTTACTTAAC
ATATTTATCTTACTCTTCATATTTATCGGCGTGGATATTTTATTCGGTTT
TCGAATGATCGATAAAAACATCATTCTCTCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050526-exon-scaffold_179-1491911889:404021..405878 | TCONS_00050526-exon-scaffold_179-1491911889:404021..405878 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1510915933:404021..405878 | TCONS_00050526-exon-scaffold_179-1510915933:404021..405878 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1575043694:404021..405878 | TCONS_00050526-exon-scaffold_179-1575043694:404021..405878 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1491911889:409161..409279 | TCONS_00050526-exon-scaffold_179-1491911889:409161..409279 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1510915933:409161..409279 | TCONS_00050526-exon-scaffold_179-1510915933:409161..409279 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1575043694:409161..409279 | TCONS_00050526-exon-scaffold_179-1575043694:409161..409279 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1491911889:411843..411899 | TCONS_00050526-exon-scaffold_179-1491911889:411843..411899 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1510915933:411843..411899 | TCONS_00050526-exon-scaffold_179-1510915933:411843..411899 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1575043694:411843..411899 | TCONS_00050526-exon-scaffold_179-1575043694:411843..411899 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1491911889:412584..414204 | TCONS_00050526-exon-scaffold_179-1491911889:412584..414204 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1510915933:412584..414204 | TCONS_00050526-exon-scaffold_179-1510915933:412584..414204 | Clytia hemisphaerica | exon |
| TCONS_00050526-exon-scaffold_179-1575043694:412584..414204 | TCONS_00050526-exon-scaffold_179-1575043694:412584..414204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:404021..414204 + |
Blast
BLAST of TCONS_00050526 vs. Swiss-Prot (Human)
Match: MKKS (McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin OS=Homo sapiens GN=MKKS PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 9.582e-20 Identity = 95/398 (23.87%), Postives = 182/398 (45.73%), Query Frame = 1
Query: 106 LSNLYKMLSHLHGPSSQHIAINNKL---VCSAFE---LYHSITPTDDVINLMFGFLRQQNERYKNGGSAMGILATILIQEYLKFDVPIGTVMDNNELILSTCVREIRTLSVKCNIGRFSDVTKI----IRPILMSK--LLLTREESKHLCLTFARVFTMDNFWN--------NSHVIKLENEAILKTSLNDGLMLRLEQYTN---FP-NELTDVKVILYSVSIALDSEEVLEGGSKFDYQVESRSDLKESLLNGNVLRTCRLMHGLVQLIVCQKVIHPRAKKWFKDNAIYCIDRVGKACMKKLETICQCIAVNNLSETDLSSYLGHISLAKRVNLIEKNFLRLENVNVPQIKTVILCAEDEIRLNALDICYEQTLTALDTVSKTENVLYGGGCSITRL 1227
LS L ++++ +GPS + ++N VC+ + L + T ++ ++ ++ + + G IL LI+ + + TV+ N+ +LS C+ +++ + C I T+I +R IL SK +LTR+E++H+ R F + N S ++ L+ + ++ +++ G+++ + + P + T +KV L+ +++ D+ + EG Y V + + + LLN +L+ V L++CQKVIHP K++ + I IDR+G M+ L + + +L +SY G + K+F L N I +++LC ++ + L + + L L K L GGGC+ T L
Sbjct: 26 LSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLNKHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGR----QLISDHVDLVLCQKVIHPSLKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSY-GSVKDVCTAKFGSKHFFHLIP-NEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHL 417
The following BLAST results are available for this feature:
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